Wall clock time and date at job start Wed Apr 1 2020 03:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21286 * 120.00206 * 2 1 4 4 N 1.34779 * 120.00144 * 180.02562 * 2 1 3 5 5 C 1.39920 * 120.00445 * 174.45926 * 4 2 1 6 6 C 1.38899 * 120.06640 * 335.16524 * 5 4 2 7 7 C 1.38089 * 119.92594 * 180.02562 * 6 5 4 8 8 C 1.38308 * 120.07234 * 359.72715 * 7 6 5 9 9 C 1.38251 * 120.13942 * 0.54693 * 8 7 6 10 10 C 1.38136 * 120.07073 * 359.45299 * 9 8 7 11 11 C 1.50701 * 120.03440 * 180.29534 * 10 9 8 12 12 C 1.50707 * 109.47185 * 264.99830 * 11 10 9 13 13 O 1.21284 * 119.99646 * 0.02562 * 12 11 10 14 14 N 1.34778 * 120.00148 * 180.02562 * 12 11 10 15 15 C 1.46497 * 119.99711 * 180.02562 * 14 12 11 16 16 H 1.08997 * 109.47431 * 324.99604 * 15 14 12 17 17 C 1.53001 * 109.47065 * 85.00303 * 15 14 12 18 18 C 1.53003 * 109.46746 * 204.99595 * 15 14 12 19 19 C 1.53947 * 113.73864 * 151.95892 * 18 15 14 20 20 N 1.47819 * 86.03608 * 222.08549 * 19 18 15 21 21 C 1.36939 * 134.46013 * 204.64389 * 20 19 18 22 22 H 1.07999 * 120.00166 * 179.86897 * 21 20 19 23 23 C 1.38807 * 119.99639 * 359.86644 * 21 20 19 24 24 N 1.31618 * 120.00426 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99962 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47213 * 60.00321 * 25 23 21 27 27 H 1.48499 * 109.47443 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47118 * 299.99957 * 25 23 21 29 29 C 1.47583 * 91.05066 * 24.54962 * 20 19 18 30 30 H 1.09000 * 109.47625 * 239.99614 * 1 2 3 31 31 H 1.09001 * 109.47103 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.47417 * 119.99305 * 1 2 3 33 33 H 0.97003 * 119.99573 * 354.45202 * 4 2 1 34 34 H 1.07997 * 120.03490 * 0.02562 * 6 5 4 35 35 H 1.08001 * 119.96263 * 180.02562 * 7 6 5 36 36 H 1.08000 * 119.93095 * 180.27566 * 8 7 6 37 37 H 1.08007 * 119.96745 * 179.72411 * 9 8 7 38 38 H 1.08995 * 109.47269 * 24.99785 * 11 10 9 39 39 H 1.08997 * 109.47385 * 145.00229 * 11 10 9 40 40 H 0.97006 * 119.99545 * 359.97438 * 14 12 11 41 41 H 1.09000 * 109.47004 * 304.98559 * 17 15 14 42 42 H 1.09000 * 109.47730 * 64.99009 * 17 15 14 43 43 H 1.09004 * 109.47035 * 184.98930 * 17 15 14 44 44 H 1.09000 * 112.94746 * 283.55217 * 18 15 14 45 45 H 1.08998 * 113.77009 * 336.34835 * 19 18 15 46 46 H 1.08997 * 113.76848 * 107.75156 * 19 18 15 47 47 H 0.96998 * 120.00477 * 179.97438 * 24 23 21 48 48 H 1.08997 * 113.77355 * 221.15261 * 29 20 19 49 49 H 1.09005 * 113.87422 * 89.76554 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5752 -1.1701 -0.1175 6 6 4.2242 -0.1059 -0.7304 7 6 5.6004 -0.1120 -0.8448 8 6 6.3327 -1.1734 -0.3448 9 6 5.6892 -2.2367 0.2607 10 6 4.3128 -2.2367 0.3783 11 6 3.6127 -3.3931 1.0445 12 6 3.1633 -4.3791 -0.0030 13 8 3.3896 -4.1641 -1.1749 14 7 2.5098 -5.4997 0.3627 15 6 2.0734 -6.4583 -0.6555 16 1 1.7775 -5.9216 -1.5568 17 6 3.2236 -7.4122 -0.9842 18 6 0.8826 -7.2592 -0.1247 19 6 -0.0656 -7.7641 -1.2274 20 7 -1.1643 -7.3660 -0.3222 21 6 -2.4682 -7.7547 -0.1677 22 1 -3.0819 -7.2961 0.5935 23 6 -3.0012 -8.7383 -0.9895 24 7 -2.2533 -9.2976 -1.9169 25 14 -4.7797 -9.2691 -0.7783 26 1 -5.6731 -8.1020 -0.9898 27 1 -5.1020 -10.3260 -1.7703 28 1 -4.9777 -9.8019 0.5937 29 6 -0.2915 -6.3835 0.3493 30 1 -0.3634 -0.5139 0.8899 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3634 -0.5137 -0.8900 33 1 1.6992 -2.0053 0.0803 34 1 3.6533 0.7252 -1.1171 35 1 6.1057 0.7153 -1.3209 36 1 7.4092 -1.1737 -0.4316 37 1 6.2635 -3.0662 0.6462 38 1 4.2984 -3.8839 1.7350 39 1 2.7456 -3.0255 1.5932 40 1 2.3291 -5.6717 1.3001 41 1 4.1010 -6.8358 -1.2778 42 1 3.4605 -8.0123 -0.1056 43 1 2.9290 -8.0680 -1.8034 44 1 1.1730 -8.0287 0.5906 45 1 -0.0205 -7.1804 -2.1468 46 1 -0.0052 -8.8385 -1.4008 47 1 -2.6256 -9.9852 -2.4909 48 1 -0.4109 -6.3577 1.4324 49 1 -0.3117 -5.3926 -0.1045 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734126967.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:12 Heat of formation + Delta-G solvation = 6.456618 kcal Electronic energy + Delta-G solvation = -30210.575314 eV Core-core repulsion = 26139.319992 eV Total energy + Delta-G solvation = -4071.255322 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.00888 -39.82780 -38.66704 -37.92855 -35.06627 -34.80917 -32.98180 -32.16465 -31.10211 -30.62699 -28.92423 -27.57362 -27.41423 -24.83430 -24.07339 -23.30472 -22.25667 -21.08069 -20.61741 -20.28342 -19.17275 -18.02890 -17.17851 -17.03916 -16.82798 -16.29033 -15.80556 -15.78354 -15.19332 -14.84507 -14.56017 -14.49348 -14.16279 -13.99829 -13.78059 -13.58615 -13.35119 -13.17735 -12.99773 -12.79928 -12.53235 -12.35421 -12.33981 -12.06729 -11.65369 -11.63715 -11.45046 -11.39642 -11.26314 -10.91528 -10.71089 -10.69608 -10.41924 -10.15408 -9.98912 -9.85892 -9.70489 -9.47509 -8.91818 -8.85399 -8.82417 -8.17741 -6.92652 -5.81032 -3.13669 1.11281 1.29638 2.35522 2.63619 2.82933 3.20862 3.35958 3.40109 3.41745 3.76999 4.38820 4.40824 4.45241 4.63858 4.83663 4.93091 4.96880 5.01943 5.07324 5.08949 5.14960 5.16707 5.28800 5.36149 5.46444 5.48148 5.49721 5.57929 5.60053 5.75300 5.89197 5.96307 6.02154 6.11071 6.21246 6.23802 6.28161 6.35592 6.37684 6.45530 6.54551 6.57678 6.74281 6.91684 7.12694 7.17549 7.30749 7.51135 7.58531 7.80602 7.93657 8.27740 8.99917 9.66562 10.55057 11.35987 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013790 B = 0.002544 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.944411 B =11002.457763 C =12565.971054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.512 3.488 3 O -0.527 6.527 4 N -0.669 5.669 5 C 0.165 3.835 6 C -0.132 4.132 7 C -0.101 4.101 8 C -0.139 4.139 9 C -0.087 4.087 10 C -0.095 4.095 11 C -0.106 4.106 12 C 0.505 3.495 13 O -0.530 6.530 14 N -0.719 5.719 15 C 0.150 3.850 16 H 0.087 0.913 17 C -0.157 4.157 18 C -0.147 4.147 19 C 0.175 3.825 20 N -0.612 5.612 21 C -0.226 4.226 22 H 0.078 0.922 23 C -0.007 4.007 24 N -0.921 5.921 25 Si 0.912 3.088 26 H -0.285 1.285 27 H -0.289 1.289 28 H -0.284 1.284 29 C 0.126 3.874 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.412 0.588 34 H 0.144 0.856 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.399 0.601 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.028 0.972 46 H 0.074 0.926 47 H 0.255 0.745 48 H 0.040 0.960 49 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.814 14.176 7.134 21.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.301 3.699 3 O -0.403 6.403 4 N -0.313 5.313 5 C 0.070 3.930 6 C -0.152 4.152 7 C -0.119 4.119 8 C -0.158 4.158 9 C -0.105 4.105 10 C -0.098 4.098 11 C -0.146 4.146 12 C 0.291 3.709 13 O -0.406 6.406 14 N -0.370 5.370 15 C 0.046 3.954 16 H 0.105 0.895 17 C -0.216 4.216 18 C -0.168 4.168 19 C 0.049 3.951 20 N -0.338 5.338 21 C -0.353 4.353 22 H 0.096 0.904 23 C -0.204 4.204 24 N -0.568 5.568 25 Si 0.742 3.258 26 H -0.212 1.212 27 H -0.215 1.215 28 H -0.211 1.211 29 C 0.000 4.000 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.248 0.752 34 H 0.161 0.839 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.125 0.875 39 H 0.115 0.885 40 H 0.232 0.768 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.107 0.893 45 H 0.045 0.955 46 H 0.093 0.907 47 H 0.065 0.935 48 H 0.058 0.942 49 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 14.993 14.895 6.179 22.019 hybrid contribution -1.381 -0.914 0.482 1.725 sum 13.612 13.981 6.661 20.618 Atomic orbital electron populations 1.21969 0.90452 1.06071 1.05114 1.21054 0.91047 0.82940 0.74870 1.90684 1.70488 1.31355 1.47799 1.43678 1.05619 1.10142 1.71890 1.17553 0.82300 0.95831 0.97267 1.21331 0.94925 0.99203 0.99708 1.21035 0.93527 0.98325 0.99055 1.21048 0.99835 0.94468 1.00459 1.20757 0.92804 0.98157 0.98813 1.18974 0.93672 0.95036 1.02103 1.20649 1.02027 0.94143 0.97745 1.20522 0.78260 0.82154 0.90003 1.90751 1.54925 1.76061 1.18869 1.46178 1.58174 1.21610 1.11031 1.21111 0.93785 0.89064 0.91479 0.89503 1.22117 0.98273 0.99310 1.01857 1.23887 0.92302 0.98691 1.01875 1.22255 0.82327 1.00108 0.90418 1.45969 1.08777 1.41053 1.37964 1.18958 0.85559 1.16357 1.14472 0.90376 1.24782 0.98303 0.99278 0.97997 1.69792 1.35241 1.29270 1.22456 0.86214 0.84304 0.78043 0.77263 1.21198 1.21519 1.21079 1.22499 0.88428 0.92804 0.96240 0.88861 0.88444 0.88646 0.75205 0.83891 0.85904 0.86072 0.85867 0.87518 0.88497 0.76770 0.92846 0.92766 0.91291 0.89282 0.95462 0.90730 0.93522 0.94196 0.95213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.27 10.32 36.00 0.37 -0.89 16 2 C 0.51 5.56 7.74 -10.99 -0.09 5.47 16 3 O -0.53 -7.43 14.25 5.55 0.08 -7.36 16 4 N -0.67 -7.13 4.99 -9.87 -0.05 -7.18 16 5 C 0.17 2.03 6.41 -83.70 -0.54 1.49 16 6 C -0.13 -1.68 8.72 -39.39 -0.34 -2.02 16 7 C -0.10 -1.09 10.04 -39.61 -0.40 -1.49 16 8 C -0.14 -1.39 10.04 -39.55 -0.40 -1.79 16 9 C -0.09 -0.89 9.67 -39.61 -0.38 -1.28 16 10 C -0.09 -1.05 4.39 -104.43 -0.46 -1.50 16 11 C -0.11 -0.91 5.21 -29.03 -0.15 -1.07 16 12 C 0.51 5.95 7.51 -10.98 -0.08 5.87 16 13 O -0.53 -8.51 15.70 5.55 0.09 -8.43 16 14 N -0.72 -7.93 4.72 -53.80 -0.25 -8.18 16 15 C 0.15 2.11 2.43 -67.93 -0.17 1.95 16 16 H 0.09 1.45 7.28 -51.93 -0.38 1.07 16 17 C -0.16 -2.05 9.47 37.16 0.35 -1.70 16 18 C -0.15 -2.45 3.41 -89.69 -0.31 -2.75 16 19 C 0.17 3.90 7.08 -2.83 -0.02 3.88 16 20 N -0.61 -15.02 3.70 -177.68 -0.66 -15.68 16 21 C -0.23 -6.17 10.70 -15.06 -0.16 -6.34 16 22 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 23 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 24 N -0.92 -26.80 11.39 55.49 0.63 -26.17 16 25 Si 0.91 21.71 29.55 -169.99 -5.02 16.69 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 29 C 0.13 2.33 8.14 -2.96 -0.02 2.31 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.10 0.66 8.12 -51.93 -0.42 0.24 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.41 3.80 7.28 -40.82 -0.30 3.50 16 34 H 0.14 1.94 5.79 -52.49 -0.30 1.64 16 35 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 37 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 38 H 0.11 0.67 8.05 -51.93 -0.42 0.25 16 39 H 0.10 0.66 7.26 -51.93 -0.38 0.29 16 40 H 0.40 3.40 8.60 -40.82 -0.35 3.05 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.09 1.44 8.13 -51.93 -0.42 1.02 16 45 H 0.03 0.64 7.89 -51.93 -0.41 0.23 16 46 H 0.07 1.85 7.16 -51.93 -0.37 1.48 16 47 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 48 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.03 0.54 8.10 -51.93 -0.42 0.12 16 LS Contribution 405.25 15.07 6.11 6.11 Total: -1.00 -35.30 405.25 -9.49 -44.78 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -7.52 Total: 5.57 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -2.88 Total: -0.15 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: -0.33 Total: -57.22 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: 0.17 Total: -15.78 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.30 -9.49 -44.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734126967.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.238 kcal (2) G-P(sol) polarization free energy of solvation -35.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds