Wall clock time and date at job start Wed Apr 1 2020 03:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21286 * 120.00206 * 2 1 4 4 N 1.34779 * 120.00144 * 180.02562 * 2 1 3 5 5 C 1.39920 * 120.00445 * 174.45926 * 4 2 1 6 6 C 1.38899 * 120.06640 * 335.16524 * 5 4 2 7 7 C 1.38089 * 119.92594 * 180.02562 * 6 5 4 8 8 C 1.38308 * 120.07234 * 359.72715 * 7 6 5 9 9 C 1.38251 * 120.13942 * 0.54693 * 8 7 6 10 10 C 1.38136 * 120.07073 * 359.45299 * 9 8 7 11 11 C 1.50701 * 120.03440 * 180.29534 * 10 9 8 12 12 C 1.50707 * 109.47185 * 264.99830 * 11 10 9 13 13 O 1.21284 * 119.99646 * 0.02562 * 12 11 10 14 14 N 1.34778 * 120.00148 * 180.02562 * 12 11 10 15 15 C 1.46497 * 119.99711 * 180.02562 * 14 12 11 16 16 H 1.08997 * 109.47431 * 324.99604 * 15 14 12 17 17 C 1.53001 * 109.47065 * 85.00303 * 15 14 12 18 18 C 1.53003 * 109.46746 * 204.99595 * 15 14 12 19 19 C 1.53947 * 113.73864 * 151.95892 * 18 15 14 20 20 N 1.47819 * 86.03608 * 222.08549 * 19 18 15 21 21 C 1.36939 * 134.46013 * 204.64389 * 20 19 18 22 22 H 1.07999 * 120.00166 * 179.86897 * 21 20 19 23 23 C 1.38807 * 119.99639 * 359.86644 * 21 20 19 24 24 N 1.31618 * 120.00426 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99962 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47213 * 60.00321 * 25 23 21 27 27 H 1.48499 * 109.47443 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47118 * 299.99957 * 25 23 21 29 29 C 1.47583 * 91.05066 * 24.54962 * 20 19 18 30 30 H 1.09000 * 109.47625 * 239.99614 * 1 2 3 31 31 H 1.09001 * 109.47103 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.47417 * 119.99305 * 1 2 3 33 33 H 0.97003 * 119.99573 * 354.45202 * 4 2 1 34 34 H 1.07997 * 120.03490 * 0.02562 * 6 5 4 35 35 H 1.08001 * 119.96263 * 180.02562 * 7 6 5 36 36 H 1.08000 * 119.93095 * 180.27566 * 8 7 6 37 37 H 1.08007 * 119.96745 * 179.72411 * 9 8 7 38 38 H 1.08995 * 109.47269 * 24.99785 * 11 10 9 39 39 H 1.08997 * 109.47385 * 145.00229 * 11 10 9 40 40 H 0.97006 * 119.99545 * 359.97438 * 14 12 11 41 41 H 1.09000 * 109.47004 * 304.98559 * 17 15 14 42 42 H 1.09000 * 109.47730 * 64.99009 * 17 15 14 43 43 H 1.09004 * 109.47035 * 184.98930 * 17 15 14 44 44 H 1.09000 * 112.94746 * 283.55217 * 18 15 14 45 45 H 1.08998 * 113.77009 * 336.34835 * 19 18 15 46 46 H 1.08997 * 113.76848 * 107.75156 * 19 18 15 47 47 H 0.96998 * 120.00477 * 179.97438 * 24 23 21 48 48 H 1.08997 * 113.77355 * 221.15261 * 29 20 19 49 49 H 1.09005 * 113.87422 * 89.76554 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5752 -1.1701 -0.1175 6 6 4.2242 -0.1059 -0.7304 7 6 5.6004 -0.1120 -0.8448 8 6 6.3327 -1.1734 -0.3448 9 6 5.6892 -2.2367 0.2607 10 6 4.3128 -2.2367 0.3783 11 6 3.6127 -3.3931 1.0445 12 6 3.1633 -4.3791 -0.0030 13 8 3.3896 -4.1641 -1.1749 14 7 2.5098 -5.4997 0.3627 15 6 2.0734 -6.4583 -0.6555 16 1 1.7775 -5.9216 -1.5568 17 6 3.2236 -7.4122 -0.9842 18 6 0.8826 -7.2592 -0.1247 19 6 -0.0656 -7.7641 -1.2274 20 7 -1.1643 -7.3660 -0.3222 21 6 -2.4682 -7.7547 -0.1677 22 1 -3.0819 -7.2961 0.5935 23 6 -3.0012 -8.7383 -0.9895 24 7 -2.2533 -9.2976 -1.9169 25 14 -4.7797 -9.2691 -0.7783 26 1 -5.6731 -8.1020 -0.9898 27 1 -5.1020 -10.3260 -1.7703 28 1 -4.9777 -9.8019 0.5937 29 6 -0.2915 -6.3835 0.3493 30 1 -0.3634 -0.5139 0.8899 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3634 -0.5137 -0.8900 33 1 1.6992 -2.0053 0.0803 34 1 3.6533 0.7252 -1.1171 35 1 6.1057 0.7153 -1.3209 36 1 7.4092 -1.1737 -0.4316 37 1 6.2635 -3.0662 0.6462 38 1 4.2984 -3.8839 1.7350 39 1 2.7456 -3.0255 1.5932 40 1 2.3291 -5.6717 1.3001 41 1 4.1010 -6.8358 -1.2778 42 1 3.4605 -8.0123 -0.1056 43 1 2.9290 -8.0680 -1.8034 44 1 1.1730 -8.0287 0.5906 45 1 -0.0205 -7.1804 -2.1468 46 1 -0.0052 -8.8385 -1.4008 47 1 -2.6256 -9.9852 -2.4909 48 1 -0.4109 -6.3577 1.4324 49 1 -0.3117 -5.3926 -0.1045 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734126967.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:11 Heat of formation + Delta-G solvation = -17.024784 kcal Electronic energy + Delta-G solvation = -30211.593544 eV Core-core repulsion = 26139.319992 eV Total energy + Delta-G solvation = -4072.273552 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.85301 -40.89086 -39.78646 -39.12962 -36.11988 -35.87975 -34.13730 -33.73922 -31.84046 -31.79216 -29.67884 -29.32328 -28.23660 -26.47027 -25.66147 -24.12681 -23.38986 -22.26226 -21.44700 -21.29061 -20.63146 -18.87514 -18.71946 -17.99835 -17.93596 -17.34019 -16.86554 -16.69823 -16.61359 -16.01231 -15.83575 -15.49187 -15.36700 -15.23024 -14.80464 -14.65527 -14.50076 -14.21584 -13.98198 -13.68997 -13.47090 -13.41320 -13.22014 -13.09882 -13.04027 -12.98920 -12.92320 -12.62376 -12.40839 -12.36304 -12.18475 -11.96971 -11.80309 -11.56087 -11.52851 -11.16892 -10.86671 -10.83631 -10.79565 -9.96413 -9.69051 -9.00824 -8.89123 -7.88809 -5.21812 0.29711 0.46386 1.46356 1.49184 1.54572 1.55346 1.73360 2.06537 2.25487 2.48875 2.93711 3.31965 3.42593 3.64259 3.72260 3.76676 3.93579 4.00889 4.11502 4.22150 4.29460 4.35427 4.39189 4.49104 4.50040 4.55509 4.58473 4.62571 4.70998 4.76797 4.82675 4.89370 4.91324 5.01298 5.02114 5.11259 5.17699 5.28431 5.32451 5.34420 5.43679 5.56290 5.56736 5.62804 5.64452 5.69444 5.96387 6.11792 6.34052 6.70943 6.93499 7.00669 7.39511 7.63565 8.59067 9.28011 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013790 B = 0.002544 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.944411 B =11002.457763 C =12565.971054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.505 3.495 3 O -0.567 6.567 4 N -0.664 5.664 5 C 0.144 3.856 6 C -0.159 4.159 7 C -0.110 4.110 8 C -0.143 4.143 9 C -0.093 4.093 10 C -0.105 4.105 11 C -0.096 4.096 12 C 0.510 3.490 13 O -0.576 6.576 14 N -0.706 5.706 15 C 0.163 3.837 16 H 0.058 0.942 17 C -0.152 4.152 18 C -0.109 4.109 19 C 0.167 3.833 20 N -0.644 5.644 21 C -0.233 4.233 22 H 0.086 0.914 23 C -0.069 4.069 24 N -0.955 5.955 25 Si 0.976 3.024 26 H -0.279 1.279 27 H -0.297 1.297 28 H -0.274 1.274 29 C 0.131 3.869 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.418 0.582 34 H 0.124 0.876 35 H 0.138 0.862 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.141 0.859 39 H 0.119 0.881 40 H 0.416 0.584 41 H 0.051 0.949 42 H 0.074 0.926 43 H 0.057 0.943 44 H 0.103 0.897 45 H 0.008 0.992 46 H 0.041 0.959 47 H 0.247 0.753 48 H 0.066 0.934 49 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.520 14.110 9.768 23.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.296 3.704 3 O -0.446 6.446 4 N -0.308 5.308 5 C 0.049 3.951 6 C -0.179 4.179 7 C -0.129 4.129 8 C -0.161 4.161 9 C -0.111 4.111 10 C -0.108 4.108 11 C -0.136 4.136 12 C 0.297 3.703 13 O -0.455 6.455 14 N -0.358 5.358 15 C 0.058 3.942 16 H 0.077 0.923 17 C -0.210 4.210 18 C -0.129 4.129 19 C 0.041 3.959 20 N -0.371 5.371 21 C -0.362 4.362 22 H 0.104 0.896 23 C -0.262 4.262 24 N -0.604 5.604 25 Si 0.804 3.196 26 H -0.205 1.205 27 H -0.224 1.224 28 H -0.199 1.199 29 C 0.006 3.994 30 H 0.135 0.865 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.256 0.744 34 H 0.142 0.858 35 H 0.156 0.844 36 H 0.165 0.835 37 H 0.166 0.834 38 H 0.159 0.841 39 H 0.137 0.863 40 H 0.253 0.747 41 H 0.070 0.930 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.122 0.878 45 H 0.026 0.974 46 H 0.060 0.940 47 H 0.056 0.944 48 H 0.084 0.916 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 15.702 14.838 8.878 23.357 hybrid contribution -1.534 -0.836 -0.351 1.782 sum 14.168 14.002 8.527 21.668 Atomic orbital electron populations 1.21999 0.87518 1.06791 1.06557 1.21746 0.92435 0.82380 0.73809 1.90667 1.71550 1.32668 1.49686 1.43680 1.05282 1.10403 1.71455 1.17824 0.83119 0.96357 0.97815 1.21371 0.95902 0.99431 1.01218 1.21297 0.93045 0.99370 0.99142 1.21398 1.01181 0.93913 0.99626 1.21179 0.92897 0.98812 0.98220 1.19271 0.94206 0.95249 1.02056 1.20683 1.03460 0.92538 0.96887 1.21009 0.77225 0.82133 0.89932 1.90752 1.56666 1.76951 1.21093 1.45929 1.57740 1.20871 1.11240 1.20687 0.93215 0.89237 0.91104 0.92334 1.22053 0.97498 0.99010 1.02422 1.23474 0.92087 0.98342 0.99025 1.22161 0.84349 0.98003 0.91402 1.46406 1.08620 1.42974 1.39077 1.19404 0.87062 1.15726 1.13984 0.89647 1.25619 1.02259 1.00035 0.98321 1.69994 1.36756 1.30024 1.23618 0.85189 0.79752 0.77378 0.77245 1.20509 1.22374 1.19934 1.22681 0.87151 0.92204 0.97319 0.86516 0.88179 0.87811 0.74446 0.85801 0.84438 0.83521 0.83365 0.84105 0.86275 0.74693 0.92968 0.90699 0.92382 0.87837 0.97388 0.94024 0.94373 0.91578 0.94302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.32 71.23 0.74 -1.49 16 2 C 0.51 10.95 7.74 87.65 0.68 11.63 16 3 O -0.57 -16.61 14.25 -3.05 -0.04 -16.65 16 4 N -0.66 -13.73 4.99 -303.51 -1.52 -15.25 16 5 C 0.14 3.47 6.41 38.15 0.24 3.72 16 6 C -0.16 -4.17 8.72 22.39 0.20 -3.98 16 7 C -0.11 -2.37 10.04 22.25 0.22 -2.15 16 8 C -0.14 -2.61 10.04 22.29 0.22 -2.38 16 9 C -0.09 -1.68 9.67 22.25 0.22 -1.46 16 10 C -0.10 -2.10 4.39 -19.74 -0.09 -2.19 16 11 C -0.10 -1.32 5.21 29.10 0.15 -1.17 16 12 C 0.51 10.62 7.51 87.66 0.66 11.28 16 13 O -0.58 -17.80 15.70 -3.04 -0.05 -17.85 16 14 N -0.71 -13.24 4.72 -442.52 -2.09 -15.32 16 15 C 0.16 4.31 2.43 44.99 0.11 4.42 16 16 H 0.06 1.94 7.28 -2.39 -0.02 1.92 16 17 C -0.15 -3.68 9.47 71.98 0.68 -3.00 16 18 C -0.11 -3.44 3.41 -10.13 -0.03 -3.48 16 19 C 0.17 7.58 7.08 86.44 0.61 8.19 16 20 N -0.64 -31.38 3.70 -716.04 -2.65 -34.03 16 21 C -0.23 -12.67 10.70 84.03 0.90 -11.77 16 22 H 0.09 4.37 7.83 -2.91 -0.02 4.35 16 23 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 24 N -0.95 -57.14 11.39 21.65 0.25 -56.89 16 25 Si 0.98 44.86 29.55 68.60 2.03 46.89 16 26 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 27 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 28 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 29 C 0.13 4.52 8.14 86.49 0.70 5.22 16 30 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.10 1.27 8.12 -2.39 -0.02 1.25 16 32 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.42 7.11 7.28 -92.71 -0.67 6.43 16 34 H 0.12 3.64 5.79 -2.91 -0.02 3.63 16 35 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 36 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 37 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 38 H 0.14 1.02 8.05 -2.39 -0.02 1.01 16 39 H 0.12 1.14 7.26 -2.39 -0.02 1.12 16 40 H 0.42 5.14 8.60 -92.70 -0.80 4.34 16 41 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 44 H 0.10 3.04 8.13 -2.39 -0.02 3.02 16 45 H 0.01 0.40 7.89 -2.39 -0.02 0.38 16 46 H 0.04 2.15 7.16 -2.39 -0.02 2.13 16 47 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 48 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 49 H 0.04 1.31 8.10 -2.38 -0.02 1.29 16 Total: -1.00 -80.42 405.25 2.11 -78.31 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: -0.50 Total: 22.82 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 6.68 Total: 7.97 kcal Atomic # 7 Polarization: -115.48 SS G_CDS: -6.01 Total: -121.49 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -0.09 Total: -34.50 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -80.42 2.11 -78.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734126967.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.288 kcal (2) G-P(sol) polarization free energy of solvation -80.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds