Wall clock time and date at job start Wed Apr 1 2020 04:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35767 * 117.00316 * 2 1 4 4 C 1.38086 * 120.20048 * 359.97345 * 3 2 1 5 5 C 1.38738 * 120.40178 * 180.02562 * 4 3 2 6 6 C 1.37771 * 120.72652 * 0.04700 * 5 4 3 7 7 C 1.39169 * 120.07490 * 359.67192 * 6 5 4 8 8 N 1.37530 * 133.05413 * 179.63453 * 7 6 5 9 9 H 0.97001 * 125.63218 * 0.71432 * 8 7 6 10 10 C 1.38294 * 108.74226 * 180.44222 * 8 7 6 11 11 C 1.46921 * 125.45291 * 180.28234 * 10 8 7 12 12 O 1.21664 * 119.99882 * 179.97438 * 11 10 8 13 13 N 1.34769 * 119.99948 * 359.97438 * 11 10 8 14 14 C 1.46500 * 119.99988 * 179.97438 * 13 11 10 15 15 H 1.09007 * 109.47304 * 325.00220 * 14 13 11 16 16 C 1.52998 * 109.47148 * 85.00055 * 14 13 11 17 17 C 1.52997 * 109.47467 * 204.99907 * 14 13 11 18 18 C 1.52998 * 109.47266 * 64.99948 * 17 14 13 19 19 C 1.53000 * 109.47710 * 180.02562 * 18 17 14 20 20 N 1.46490 * 109.47494 * 180.02562 * 19 18 17 21 21 C 1.36933 * 120.00398 * 179.97438 * 20 19 18 22 22 H 1.08002 * 119.99910 * 359.97438 * 21 20 19 23 23 C 1.38809 * 120.00342 * 179.97438 * 21 20 19 24 24 N 1.31616 * 120.00370 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99927 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47275 * 90.00511 * 25 23 21 27 27 H 1.48506 * 109.47093 * 210.00603 * 25 23 21 28 28 H 1.48502 * 109.47279 * 330.00190 * 25 23 21 29 29 C 1.35932 * 109.09193 * 0.26915 * 10 8 7 30 30 C 1.40562 * 120.20505 * 179.97438 * 3 2 1 31 31 H 1.08990 * 109.46983 * 300.00385 * 1 2 3 32 32 H 1.09001 * 109.46619 * 59.99986 * 1 2 3 33 33 H 1.08994 * 109.47118 * 180.02562 * 1 2 3 34 34 H 1.07998 * 119.79874 * 0.02562 * 4 3 2 35 35 H 1.07997 * 119.64008 * 180.02562 * 5 4 3 36 36 H 1.08001 * 119.96357 * 179.97438 * 6 5 4 37 37 H 0.97005 * 120.00616 * 359.97438 * 13 11 10 38 38 H 1.09002 * 109.47455 * 180.02562 * 16 14 13 39 39 H 1.09000 * 109.47194 * 299.99754 * 16 14 13 40 40 H 1.08995 * 109.47282 * 59.99830 * 16 14 13 41 41 H 1.08999 * 109.47454 * 184.99808 * 17 14 13 42 42 H 1.09006 * 109.47157 * 305.00082 * 17 14 13 43 43 H 1.09000 * 109.47293 * 300.00310 * 18 17 14 44 44 H 1.09000 * 109.47191 * 59.99655 * 18 17 14 45 45 H 1.09000 * 109.46773 * 300.00356 * 19 18 17 46 46 H 1.08994 * 109.46903 * 59.99581 * 19 18 17 47 47 H 0.97004 * 120.00268 * 359.97438 * 20 19 18 48 48 H 0.96995 * 120.00554 * 179.97438 * 24 23 21 49 49 H 1.08000 * 126.12656 * 179.97438 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2097 0.0000 4 6 1.2975 2.3704 -0.0006 5 6 1.9231 3.6088 -0.0011 6 6 3.2976 3.7031 -0.0021 7 6 4.0758 2.5493 0.0044 8 7 5.4340 2.3328 -0.0012 9 1 6.1161 3.0224 -0.0016 10 6 5.6666 0.9696 0.0002 11 6 6.9898 0.3309 0.0014 12 8 7.0795 -0.8824 0.0030 13 7 8.1040 1.0891 0.0007 14 6 9.4233 0.4522 0.0025 15 1 9.3843 -0.4629 0.5935 16 6 9.8287 0.1149 -1.4337 17 6 10.4506 1.4089 0.6110 18 6 10.1147 1.6481 2.0844 19 6 11.1416 2.6052 2.6929 20 7 10.8203 2.8338 4.1037 21 6 11.6066 3.6616 4.8597 22 1 12.4640 4.1457 4.4158 23 6 11.3018 3.8786 6.1964 24 7 10.2574 3.2882 6.7375 25 14 12.3742 5.0085 7.2274 26 1 11.8561 6.3974 7.1409 27 1 12.3503 4.5584 8.6424 28 1 13.7687 4.9677 6.7185 29 6 4.4752 0.3152 0.0005 30 6 3.4489 1.2882 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 0.2190 2.3139 -0.0006 35 1 1.3261 4.5087 -0.0011 36 1 3.7717 4.6734 -0.0029 37 1 8.0324 2.0565 -0.0009 38 1 10.8102 -0.3593 -1.4324 39 1 9.0969 -0.5667 -1.8673 40 1 9.8678 1.0299 -2.0247 41 1 11.4459 0.9716 0.5317 42 1 10.4266 2.3573 0.0743 43 1 9.1194 2.0853 2.1638 44 1 10.1387 0.6997 2.6212 45 1 12.1371 2.1684 2.6134 46 1 11.1172 3.5535 2.1560 47 1 10.0505 2.3987 4.5025 48 1 10.0446 3.4395 7.6717 49 1 4.3371 -0.7559 0.0011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734266461.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:36 Heat of formation + Delta-G solvation = -16.351991 kcal Electronic energy + Delta-G solvation = -29051.559236 eV Core-core repulsion = 24979.314859 eV Total energy + Delta-G solvation = -4072.244377 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.87779 -39.95642 -39.14210 -36.86290 -36.22453 -34.89480 -32.74072 -32.05836 -31.30307 -29.75217 -29.29264 -28.99180 -27.52717 -25.74199 -24.35363 -22.95084 -22.25149 -21.73123 -20.92607 -20.78060 -20.31693 -19.06008 -17.97490 -17.03277 -16.69899 -16.14892 -16.10576 -16.07623 -15.58190 -15.36778 -14.78636 -14.66666 -14.41943 -14.30295 -13.90910 -13.71164 -13.59054 -13.49159 -13.16094 -13.01452 -12.75126 -12.72524 -12.25021 -12.23016 -12.14612 -11.81353 -11.36181 -11.35197 -11.22869 -11.15893 -10.87980 -10.83118 -10.52486 -10.44599 -10.22727 -10.02507 -9.74902 -9.70326 -9.26383 -8.87909 -8.58719 -7.70671 -6.92756 -5.76701 -3.05809 0.58587 1.29187 1.90726 2.59181 2.90260 3.02732 3.21345 3.42613 3.47448 3.49681 3.57453 4.39421 4.53421 4.58074 4.62879 4.71794 4.79033 4.83443 4.84478 4.98086 5.02450 5.09209 5.12920 5.16317 5.30094 5.37853 5.46343 5.50702 5.56383 5.58699 5.73468 5.77790 5.89636 5.95876 6.02775 6.05730 6.14223 6.16226 6.25493 6.32327 6.33994 6.37092 6.37904 6.57513 6.83424 6.86692 7.08444 7.12330 7.32657 7.68785 7.98502 8.42150 9.52859 10.11734 10.45854 11.46201 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009712 B = 0.002232 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2882.224885 B =12542.781340 C =14443.304683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.189 3.811 4 C -0.252 4.252 5 C -0.046 4.046 6 C -0.172 4.172 7 C 0.153 3.847 8 N -0.575 5.575 9 H 0.421 0.579 10 C 0.005 3.995 11 C 0.587 3.413 12 O -0.523 6.523 13 N -0.718 5.718 14 C 0.142 3.858 15 H 0.093 0.907 16 C -0.163 4.163 17 C -0.123 4.123 18 C -0.126 4.126 19 C 0.153 3.847 20 N -0.735 5.735 21 C -0.241 4.241 22 H 0.070 0.930 23 C -0.015 4.015 24 N -0.933 5.933 25 Si 0.908 3.092 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 C -0.083 4.083 30 C -0.145 4.145 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.100 0.900 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.395 0.605 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.018 0.982 46 H 0.016 0.984 47 H 0.383 0.617 48 H 0.255 0.745 49 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.208 -3.045 -20.900 27.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.222 6.222 3 C 0.142 3.858 4 C -0.272 4.272 5 C -0.066 4.066 6 C -0.193 4.193 7 C 0.041 3.959 8 N -0.180 5.180 9 H 0.259 0.741 10 C -0.103 4.103 11 C 0.373 3.627 12 O -0.399 6.399 13 N -0.369 5.369 14 C 0.038 3.962 15 H 0.111 0.889 16 C -0.221 4.221 17 C -0.162 4.162 18 C -0.164 4.164 19 C 0.025 3.975 20 N -0.379 5.379 21 C -0.372 4.372 22 H 0.088 0.912 23 C -0.211 4.211 24 N -0.582 5.582 25 Si 0.739 3.261 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.208 1.208 29 C -0.109 4.109 30 C -0.150 4.150 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.119 0.881 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.143 0.857 37 H 0.229 0.771 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.036 0.964 46 H 0.033 0.967 47 H 0.217 0.783 48 H 0.065 0.935 49 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -17.708 -4.000 -20.842 27.640 hybrid contribution 0.324 1.592 0.866 1.841 sum -17.384 -2.408 -19.976 26.590 Atomic orbital electron populations 1.23101 0.78128 1.04087 1.01525 1.86058 1.21515 1.26984 1.87664 1.18470 0.89736 0.84388 0.93189 1.20876 0.99829 0.91845 1.14639 1.20579 0.93219 0.97011 0.95764 1.19957 0.93182 0.95598 1.10582 1.18001 0.82733 0.94579 1.00568 1.41954 1.05728 1.06427 1.63872 0.74059 1.20134 0.94960 0.82318 1.12911 1.17103 0.82335 0.86679 0.76594 1.90852 1.86336 1.12792 1.49912 1.45995 1.06007 1.09781 1.75152 1.21113 0.80877 0.97339 0.96891 0.88912 1.22178 1.01970 1.01772 0.96166 1.21865 0.98641 0.99078 0.96573 1.21741 1.00001 1.00697 0.93961 1.20640 0.95214 0.95048 0.86554 1.42380 1.33838 1.56312 1.05332 1.19235 1.06515 1.19534 0.91895 0.91214 1.24765 0.98417 1.00874 0.97073 1.69660 1.28449 1.47136 1.12958 0.86181 0.79771 0.80361 0.79828 1.21729 1.21722 1.20754 1.20801 0.88684 0.99605 1.01851 1.17333 0.90532 0.93330 1.13767 0.92402 0.92491 0.88132 0.85302 0.85243 0.85669 0.77059 0.91310 0.92157 0.92538 0.90001 0.91457 0.92253 0.91786 0.96443 0.96654 0.78330 0.93483 0.82511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.22 10.50 -19.01 -0.20 -3.42 16 3 C 0.19 2.09 6.73 -38.76 -0.26 1.83 16 4 C -0.25 -2.23 9.03 -39.45 -0.36 -2.59 16 5 C -0.05 -0.38 10.01 -39.57 -0.40 -0.78 16 6 C -0.17 -1.58 10.06 -39.41 -0.40 -1.98 16 7 C 0.15 1.69 7.25 -83.98 -0.61 1.08 16 8 N -0.58 -5.77 6.08 -7.35 -0.04 -5.82 16 9 H 0.42 3.05 8.12 -40.82 -0.33 2.72 16 10 C 0.01 0.06 6.97 -82.26 -0.57 -0.51 16 11 C 0.59 7.77 7.76 -12.75 -0.10 7.67 16 12 O -0.52 -8.60 16.50 5.22 0.09 -8.52 16 13 N -0.72 -7.80 4.53 -55.04 -0.25 -8.05 16 14 C 0.14 1.58 2.57 -67.93 -0.17 1.40 16 15 H 0.09 1.22 7.58 -51.93 -0.39 0.83 16 16 C -0.16 -1.56 9.48 37.16 0.35 -1.21 16 17 C -0.12 -1.40 4.75 -26.73 -0.13 -1.53 16 18 C -0.13 -1.96 5.22 -26.73 -0.14 -2.10 16 19 C 0.15 3.04 6.26 -4.05 -0.03 3.02 16 20 N -0.73 -18.99 5.60 -59.92 -0.34 -19.32 16 21 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 22 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 23 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 24 N -0.93 -28.76 13.06 55.49 0.72 -28.04 16 25 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 29 C -0.08 -1.07 10.52 -39.20 -0.41 -1.49 16 30 C -0.14 -1.79 6.11 -106.83 -0.65 -2.44 16 31 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 32 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 33 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.13 0.82 6.28 -52.49 -0.33 0.50 16 35 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.40 3.43 7.66 -40.82 -0.31 3.11 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.93 7.75 -51.93 -0.40 0.53 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.38 10.48 7.67 -40.82 -0.31 10.17 16 48 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 49 H 0.16 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 409.13 15.07 6.17 6.17 Total: -1.00 -35.66 409.13 -9.50 -45.16 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -7.50 Total: 10.26 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -3.12 Total: -6.02 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: 0.10 Total: -61.22 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -0.11 Total: -11.94 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.66 -9.50 -45.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734266461.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.806 kcal (2) G-P(sol) polarization free energy of solvation -35.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds