Wall clock time and date at job start Wed Apr 1 2020 04:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35767 * 117.00316 * 2 1 4 4 C 1.38086 * 120.20048 * 359.97345 * 3 2 1 5 5 C 1.38738 * 120.40178 * 180.02562 * 4 3 2 6 6 C 1.37771 * 120.72652 * 0.04700 * 5 4 3 7 7 C 1.39169 * 120.07490 * 359.67192 * 6 5 4 8 8 N 1.37530 * 133.05413 * 179.63453 * 7 6 5 9 9 H 0.97001 * 125.63218 * 0.71432 * 8 7 6 10 10 C 1.38294 * 108.74226 * 180.44222 * 8 7 6 11 11 C 1.46921 * 125.45291 * 180.28234 * 10 8 7 12 12 O 1.21664 * 119.99882 * 179.97438 * 11 10 8 13 13 N 1.34769 * 119.99948 * 359.97438 * 11 10 8 14 14 C 1.46500 * 119.99988 * 179.97438 * 13 11 10 15 15 H 1.09007 * 109.47304 * 325.00220 * 14 13 11 16 16 C 1.52998 * 109.47148 * 85.00055 * 14 13 11 17 17 C 1.52997 * 109.47467 * 204.99907 * 14 13 11 18 18 C 1.52998 * 109.47266 * 64.99948 * 17 14 13 19 19 C 1.53000 * 109.47710 * 180.02562 * 18 17 14 20 20 N 1.46490 * 109.47494 * 180.02562 * 19 18 17 21 21 C 1.36933 * 120.00398 * 179.97438 * 20 19 18 22 22 H 1.08002 * 119.99910 * 359.97438 * 21 20 19 23 23 C 1.38809 * 120.00342 * 179.97438 * 21 20 19 24 24 N 1.31616 * 120.00370 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99927 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47275 * 90.00511 * 25 23 21 27 27 H 1.48506 * 109.47093 * 210.00603 * 25 23 21 28 28 H 1.48502 * 109.47279 * 330.00190 * 25 23 21 29 29 C 1.35932 * 109.09193 * 0.26915 * 10 8 7 30 30 C 1.40562 * 120.20505 * 179.97438 * 3 2 1 31 31 H 1.08990 * 109.46983 * 300.00385 * 1 2 3 32 32 H 1.09001 * 109.46619 * 59.99986 * 1 2 3 33 33 H 1.08994 * 109.47118 * 180.02562 * 1 2 3 34 34 H 1.07998 * 119.79874 * 0.02562 * 4 3 2 35 35 H 1.07997 * 119.64008 * 180.02562 * 5 4 3 36 36 H 1.08001 * 119.96357 * 179.97438 * 6 5 4 37 37 H 0.97005 * 120.00616 * 359.97438 * 13 11 10 38 38 H 1.09002 * 109.47455 * 180.02562 * 16 14 13 39 39 H 1.09000 * 109.47194 * 299.99754 * 16 14 13 40 40 H 1.08995 * 109.47282 * 59.99830 * 16 14 13 41 41 H 1.08999 * 109.47454 * 184.99808 * 17 14 13 42 42 H 1.09006 * 109.47157 * 305.00082 * 17 14 13 43 43 H 1.09000 * 109.47293 * 300.00310 * 18 17 14 44 44 H 1.09000 * 109.47191 * 59.99655 * 18 17 14 45 45 H 1.09000 * 109.46773 * 300.00356 * 19 18 17 46 46 H 1.08994 * 109.46903 * 59.99581 * 19 18 17 47 47 H 0.97004 * 120.00268 * 359.97438 * 20 19 18 48 48 H 0.96995 * 120.00554 * 179.97438 * 24 23 21 49 49 H 1.08000 * 126.12656 * 179.97438 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2097 0.0000 4 6 1.2975 2.3704 -0.0006 5 6 1.9231 3.6088 -0.0011 6 6 3.2976 3.7031 -0.0021 7 6 4.0758 2.5493 0.0044 8 7 5.4340 2.3328 -0.0012 9 1 6.1161 3.0224 -0.0016 10 6 5.6666 0.9696 0.0002 11 6 6.9898 0.3309 0.0014 12 8 7.0795 -0.8824 0.0030 13 7 8.1040 1.0891 0.0007 14 6 9.4233 0.4522 0.0025 15 1 9.3843 -0.4629 0.5935 16 6 9.8287 0.1149 -1.4337 17 6 10.4506 1.4089 0.6110 18 6 10.1147 1.6481 2.0844 19 6 11.1416 2.6052 2.6929 20 7 10.8203 2.8338 4.1037 21 6 11.6066 3.6616 4.8597 22 1 12.4640 4.1457 4.4158 23 6 11.3018 3.8786 6.1964 24 7 10.2574 3.2882 6.7375 25 14 12.3742 5.0085 7.2274 26 1 11.8561 6.3974 7.1409 27 1 12.3503 4.5584 8.6424 28 1 13.7687 4.9677 6.7185 29 6 4.4752 0.3152 0.0005 30 6 3.4489 1.2882 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 0.2190 2.3139 -0.0006 35 1 1.3261 4.5087 -0.0011 36 1 3.7717 4.6734 -0.0029 37 1 8.0324 2.0565 -0.0009 38 1 10.8102 -0.3593 -1.4324 39 1 9.0969 -0.5667 -1.8673 40 1 9.8678 1.0299 -2.0247 41 1 11.4459 0.9716 0.5317 42 1 10.4266 2.3573 0.0743 43 1 9.1194 2.0853 2.1638 44 1 10.1387 0.6997 2.6212 45 1 12.1371 2.1684 2.6134 46 1 11.1172 3.5535 2.1560 47 1 10.0505 2.3987 4.5025 48 1 10.0446 3.4395 7.6717 49 1 4.3371 -0.7559 0.0011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734266461.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:35 Heat of formation + Delta-G solvation = -40.583244 kcal Electronic energy + Delta-G solvation = -29052.609982 eV Core-core repulsion = 24979.314859 eV Total energy + Delta-G solvation = -4073.295123 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.70421 -40.87888 -39.92668 -38.02798 -36.97394 -36.56490 -34.26983 -32.99811 -32.61950 -31.07770 -30.25034 -29.73004 -28.09516 -27.25989 -25.40136 -24.58312 -22.99401 -22.65237 -22.31685 -21.77145 -21.27114 -19.86675 -19.14241 -18.76713 -17.61357 -16.96452 -16.88686 -16.77120 -16.63349 -16.32033 -16.26343 -15.89409 -15.53988 -15.43629 -15.17253 -15.04348 -14.78135 -14.45682 -14.33054 -13.93753 -13.88043 -13.47871 -13.28818 -13.19557 -13.03817 -12.85046 -12.78548 -12.46123 -12.41598 -12.27416 -12.10476 -11.99498 -11.89009 -11.83066 -11.76011 -11.53339 -11.31273 -10.94944 -10.58180 -10.25896 -9.37614 -9.02564 -8.47851 -7.97342 -5.27006 -0.25662 0.54836 1.01890 1.45717 1.47985 1.56593 1.78006 2.01311 2.22459 2.37821 2.54360 2.82404 3.36341 3.53244 3.66571 3.82461 3.94397 4.01570 4.05799 4.07584 4.21865 4.26219 4.36369 4.38880 4.43801 4.46616 4.55800 4.56678 4.64263 4.71064 4.77858 4.80614 4.83901 4.88199 4.92422 4.97765 5.09197 5.29295 5.29950 5.30802 5.37233 5.40803 5.48533 5.49504 5.50696 5.56055 5.82222 6.24981 6.30353 6.44979 6.48751 6.99995 7.30344 8.07746 8.29284 9.26463 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009712 B = 0.002232 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2882.224885 B =12542.781340 C =14443.304683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.169 3.831 4 C -0.248 4.248 5 C -0.041 4.041 6 C -0.179 4.179 7 C 0.144 3.856 8 N -0.564 5.564 9 H 0.433 0.567 10 C -0.003 4.003 11 C 0.586 3.414 12 O -0.564 6.564 13 N -0.706 5.706 14 C 0.143 3.857 15 H 0.069 0.931 16 C -0.155 4.155 17 C -0.109 4.109 18 C -0.114 4.114 19 C 0.150 3.850 20 N -0.751 5.751 21 C -0.246 4.246 22 H 0.078 0.922 23 C -0.080 4.080 24 N -0.972 5.972 25 Si 0.976 3.024 26 H -0.284 1.284 27 H -0.296 1.296 28 H -0.268 1.268 29 C -0.103 4.103 30 C -0.174 4.174 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.115 0.885 34 H 0.155 0.845 35 H 0.164 0.836 36 H 0.148 0.852 37 H 0.408 0.592 38 H 0.082 0.918 39 H 0.043 0.957 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.055 0.945 44 H 0.045 0.955 45 H 0.021 0.979 46 H 0.028 0.972 47 H 0.371 0.629 48 H 0.251 0.749 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.254 -0.662 -22.210 28.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.122 3.878 4 C -0.268 4.268 5 C -0.061 4.061 6 C -0.200 4.200 7 C 0.032 3.968 8 N -0.170 5.170 9 H 0.274 0.726 10 C -0.112 4.112 11 C 0.373 3.627 12 O -0.443 6.443 13 N -0.357 5.357 14 C 0.039 3.961 15 H 0.087 0.913 16 C -0.213 4.213 17 C -0.147 4.147 18 C -0.152 4.152 19 C 0.024 3.976 20 N -0.394 5.394 21 C -0.378 4.378 22 H 0.096 0.904 23 C -0.272 4.272 24 N -0.623 5.623 25 Si 0.805 3.195 26 H -0.211 1.211 27 H -0.223 1.223 28 H -0.192 1.192 29 C -0.130 4.130 30 C -0.179 4.179 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.133 0.867 34 H 0.173 0.827 35 H 0.181 0.819 36 H 0.166 0.834 37 H 0.245 0.755 38 H 0.101 0.899 39 H 0.063 0.937 40 H 0.093 0.907 41 H 0.113 0.887 42 H 0.109 0.891 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.039 0.961 46 H 0.045 0.955 47 H 0.202 0.798 48 H 0.060 0.940 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -17.716 -1.569 -22.205 28.449 hybrid contribution 0.245 0.843 1.220 1.503 sum -17.471 -0.726 -20.985 27.315 Atomic orbital electron populations 1.23393 0.75997 1.05575 1.02680 1.86024 1.23837 1.27234 1.87740 1.18717 0.89619 0.85403 0.94049 1.21249 1.01118 0.91318 1.13128 1.21055 0.93198 0.97992 0.93818 1.20321 0.93657 0.95806 1.10250 1.18319 0.82921 0.94889 1.00648 1.41831 1.05998 1.05731 1.63449 0.72589 1.19929 0.94208 0.83367 1.13653 1.17240 0.83090 0.86277 0.76066 1.90822 1.86922 1.14507 1.52019 1.45917 1.05463 1.10352 1.73982 1.21082 0.80778 0.96408 0.97824 0.91307 1.22106 1.02137 1.02370 0.94694 1.21766 0.99110 1.00346 0.93461 1.21607 0.98626 0.98587 0.96404 1.20861 0.96429 0.96477 0.83857 1.42664 1.33196 1.55896 1.07600 1.19682 1.06598 1.19121 0.92417 0.90385 1.25649 1.00045 1.02999 0.98526 1.69829 1.30450 1.49106 1.12945 0.85095 0.78610 0.78255 0.77539 1.21136 1.22296 1.19241 1.20853 0.89776 0.99497 1.02904 1.17635 0.91452 0.93747 1.15061 0.91393 0.91018 0.86679 0.82746 0.81880 0.83417 0.75549 0.89900 0.93749 0.90742 0.88674 0.89086 0.92622 0.93585 0.96140 0.95455 0.79799 0.94010 0.83744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.34 -7.14 10.50 -90.95 -0.95 -8.09 16 3 C 0.17 3.75 6.73 22.80 0.15 3.90 16 4 C -0.25 -3.95 9.03 22.35 0.20 -3.75 16 5 C -0.04 -0.57 10.01 22.28 0.22 -0.35 16 6 C -0.18 -2.94 10.06 22.38 0.23 -2.71 16 7 C 0.14 3.12 7.25 39.11 0.28 3.41 16 8 N -0.56 -11.24 6.08 -177.18 -1.08 -12.32 16 9 H 0.43 5.87 8.12 -92.71 -0.75 5.11 16 10 C 0.00 -0.07 6.97 39.86 0.28 0.21 16 11 C 0.59 16.16 7.76 86.52 0.67 16.83 16 12 O -0.56 -19.72 16.50 -4.23 -0.07 -19.79 16 13 N -0.71 -15.05 4.53 -446.29 -2.02 -17.07 16 14 C 0.14 3.06 2.57 44.99 0.12 3.18 16 15 H 0.07 1.85 7.58 -2.38 -0.02 1.83 16 16 C -0.15 -2.72 9.48 71.98 0.68 -2.04 16 17 C -0.11 -2.23 4.75 30.59 0.15 -2.08 16 18 C -0.11 -3.46 5.22 30.59 0.16 -3.30 16 19 C 0.15 5.77 6.26 86.38 0.54 6.31 16 20 N -0.75 -38.85 5.60 -343.48 -1.92 -40.77 16 21 C -0.25 -13.93 9.99 84.03 0.84 -13.09 16 22 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 23 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 24 N -0.97 -60.80 13.06 21.65 0.28 -60.52 16 25 Si 0.98 46.39 29.55 68.60 2.03 48.42 16 26 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 27 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 28 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 29 C -0.10 -2.90 10.52 22.52 0.24 -2.66 16 30 C -0.17 -4.46 6.11 -21.29 -0.13 -4.59 16 31 H 0.07 0.58 7.66 -2.39 -0.02 0.56 16 32 H 0.07 0.54 7.66 -2.39 -0.02 0.53 16 33 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.16 1.55 6.28 -2.91 -0.02 1.53 16 35 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 36 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 37 H 0.41 6.52 7.66 -92.70 -0.71 5.81 16 38 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 43 H 0.06 1.72 7.75 -2.39 -0.02 1.70 16 44 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.37 20.68 7.67 -92.71 -0.71 19.97 16 48 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 49 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -79.20 409.13 1.29 -77.91 By element: Atomic # 1 Polarization: 37.07 SS G_CDS: -1.18 Total: 35.89 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 6.21 Total: -3.64 kcal Atomic # 7 Polarization: -125.94 SS G_CDS: -4.74 Total: -130.68 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -1.02 Total: -27.88 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -79.20 1.29 -77.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734266461.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.327 kcal (2) G-P(sol) polarization free energy of solvation -79.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds