Wall clock time and date at job start Wed Apr 1 2020 04:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47435 * 2 1 4 4 N 1.46506 * 109.47284 * 119.99994 * 2 1 3 5 5 C 1.36936 * 119.99890 * 286.85398 * 4 2 1 6 6 H 1.08000 * 119.99992 * 0.02562 * 5 4 2 7 7 C 1.38810 * 119.99875 * 180.27333 * 5 4 2 8 8 N 1.31610 * 120.00014 * 359.72933 * 7 5 4 9 9 Si 1.86805 * 119.99809 * 179.72470 * 7 5 4 10 10 H 1.48507 * 109.46980 * 59.99974 * 9 7 5 11 11 H 1.48500 * 109.46880 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47167 * 300.00179 * 9 7 5 13 13 C 1.52998 * 109.47232 * 239.99666 * 2 1 3 14 14 H 1.09005 * 109.58961 * 286.91595 * 13 2 1 15 15 C 1.53191 * 109.58829 * 47.34291 * 13 2 1 16 16 C 1.53035 * 109.31824 * 174.42169 * 15 13 2 17 17 C 1.53037 * 109.53749 * 298.63648 * 16 15 13 18 18 C 1.53188 * 109.31426 * 61.36608 * 17 16 15 19 19 N 1.46931 * 108.77348 * 305.36049 * 18 17 16 20 20 C 1.34774 * 120.63624 * 233.63272 * 19 18 17 21 21 O 1.21523 * 120.00321 * 183.12019 * 20 19 18 22 22 C 1.48037 * 119.99619 * 3.11518 * 20 19 18 23 23 C 1.39555 * 120.00443 * 307.18213 * 22 20 19 24 24 C 1.37817 * 120.00328 * 179.74571 * 23 22 20 25 25 C 1.39563 * 119.99345 * 0.54816 * 24 23 22 26 26 C 1.48035 * 119.99600 * 179.72399 * 25 24 23 27 27 N 1.34783 * 120.00152 * 359.97438 * 26 25 24 28 28 O 1.21523 * 120.00065 * 179.97438 * 26 25 24 29 29 C 1.39549 * 120.00272 * 359.69950 * 25 24 23 30 30 C 1.37820 * 120.00211 * 0.02640 * 29 25 24 31 31 H 1.08997 * 109.46827 * 299.99917 * 1 2 3 32 32 H 1.09001 * 109.46995 * 60.00470 * 1 2 3 33 33 H 1.09000 * 109.47112 * 180.02562 * 1 2 3 34 34 H 0.97002 * 120.00214 * 106.85546 * 4 2 1 35 35 H 0.97003 * 120.00334 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.49905 * 294.37606 * 15 13 2 37 37 H 1.09008 * 109.49624 * 54.46798 * 15 13 2 38 38 H 1.08997 * 109.46223 * 178.61394 * 16 15 13 39 39 H 1.08998 * 109.44782 * 58.65122 * 16 15 13 40 40 H 1.08995 * 109.49629 * 301.40880 * 17 16 15 41 41 H 1.09004 * 109.49748 * 181.31627 * 17 16 15 42 42 H 1.09002 * 109.58858 * 185.58190 * 18 17 16 43 43 H 1.08996 * 109.70965 * 65.21692 * 18 17 16 44 44 H 1.08002 * 119.99429 * 0.02562 * 23 22 20 45 45 H 1.07999 * 120.00420 * 180.24707 * 24 23 22 46 46 H 0.97004 * 119.99805 * 359.97438 * 27 26 25 47 47 H 0.97000 * 120.00060 * 179.97438 * 27 26 25 48 48 H 1.08002 * 120.00143 * 180.02562 * 29 25 24 49 49 H 1.07994 * 119.99988 * 180.02562 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.9224 -0.0878 2.4220 6 1 1.4864 0.8966 2.5070 7 6 2.3903 -0.7398 3.5546 8 7 2.9213 -1.9395 3.4511 9 14 2.2665 0.0859 5.2257 10 1 0.8411 0.3650 5.5354 11 1 2.8316 -0.8122 6.2646 12 1 3.0275 1.3609 5.2055 13 6 2.0400 -0.7213 -1.2492 14 1 1.8801 -1.7943 -1.1425 15 6 1.2892 -0.2073 -2.4816 16 6 1.8976 -0.8287 -3.7408 17 6 3.3650 -0.4107 -3.8600 18 6 4.1394 -0.9271 -2.6434 19 7 3.4739 -0.4519 -1.4227 20 6 4.1655 0.2188 -0.4801 21 8 3.6173 0.5571 0.5503 22 6 5.5930 0.5434 -0.7001 23 6 6.4924 -0.4654 -1.0478 24 6 7.8204 -0.1624 -1.2578 25 6 8.2678 1.1515 -1.1115 26 6 9.6953 1.4760 -1.3310 27 7 10.5631 0.5025 -1.6717 28 8 10.0849 2.6200 -1.2041 29 6 7.3693 2.1593 -0.7587 30 6 6.0403 1.8573 -0.5543 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 2.4097 -1.5749 1.1199 35 1 3.2480 -2.3953 4.2426 36 1 0.2379 -0.4863 -2.4097 37 1 1.3752 0.8781 -2.5335 38 1 1.3494 -0.4837 -4.6173 39 1 1.8335 -1.9149 -3.6767 40 1 3.4315 0.6765 -3.8990 41 1 3.7913 -0.8345 -4.7693 42 1 5.1613 -0.5490 -2.6732 43 1 4.1527 -2.0170 -2.6516 44 1 6.1469 -1.4829 -1.1568 45 1 8.5157 -0.9424 -1.5308 46 1 10.2522 -0.4108 -1.7726 47 1 11.4984 0.7152 -1.8159 48 1 7.7155 3.1761 -0.6459 49 1 5.3450 2.6373 -0.2817 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752157205.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:59 Heat of formation + Delta-G solvation = 7.932195 kcal Electronic energy + Delta-G solvation = -31613.606354 eV Core-core repulsion = 27542.415018 eV Total energy + Delta-G solvation = -4071.191336 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.64918 -39.87993 -38.18075 -36.79923 -35.21536 -34.08018 -32.80154 -32.21755 -31.00573 -30.96123 -29.85695 -27.77588 -25.81386 -24.29165 -24.11175 -22.96995 -22.42861 -21.34069 -20.48764 -19.99459 -19.20131 -18.31294 -17.22202 -16.91480 -16.52758 -15.71353 -15.24334 -15.06892 -14.90184 -14.83994 -14.52799 -14.46640 -14.29931 -13.84389 -13.66932 -13.47362 -13.36886 -13.01787 -12.94089 -12.49634 -12.34348 -12.27475 -12.09484 -11.94102 -11.39687 -11.21158 -11.13810 -10.92261 -10.84081 -10.64028 -10.59335 -10.41354 -10.30052 -10.14853 -9.99061 -9.71722 -9.42400 -9.10246 -9.00118 -8.64494 -8.36521 -8.03428 -6.51392 -5.49382 -2.69590 0.57760 1.26417 2.59690 3.23821 3.31292 3.35703 3.59023 3.62789 3.64507 3.81963 4.52498 4.64660 4.72055 4.77093 4.80076 4.86713 4.91450 5.02466 5.18862 5.23049 5.35542 5.40246 5.46761 5.59596 5.61939 5.76778 5.80684 5.84573 5.87824 5.89837 5.96091 6.07085 6.09319 6.10675 6.13967 6.17879 6.32600 6.37088 6.46358 6.47148 6.49484 6.70454 6.80369 6.91207 7.04552 7.04990 7.36314 7.89012 7.94679 7.99425 8.67970 8.87626 9.80060 10.37114 10.72390 11.75030 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008710 B = 0.004222 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3213.907320 B = 6630.144738 C = 9047.582050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.180 3.820 3 H 0.059 0.941 4 N -0.693 5.693 5 C -0.186 4.186 6 H 0.062 0.938 7 C -0.024 4.024 8 N -0.944 5.944 9 Si 0.897 3.103 10 H -0.291 1.291 11 H -0.295 1.295 12 H -0.290 1.290 13 C 0.148 3.852 14 H 0.067 0.933 15 C -0.128 4.128 16 C -0.119 4.119 17 C -0.134 4.134 18 C 0.103 3.897 19 N -0.608 5.608 20 C 0.510 3.490 21 O -0.419 6.419 22 C -0.071 4.071 23 C -0.103 4.103 24 C -0.091 4.091 25 C -0.138 4.138 26 C 0.566 3.434 27 N -0.852 5.852 28 O -0.542 6.542 29 C -0.060 4.060 30 C -0.085 4.085 31 H 0.054 0.946 32 H 0.037 0.963 33 H 0.044 0.956 34 H 0.377 0.623 35 H 0.248 0.752 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.086 0.914 43 H 0.063 0.937 44 H 0.135 0.865 45 H 0.128 0.872 46 H 0.401 0.599 47 H 0.404 0.596 48 H 0.139 0.861 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.079 0.432 -19.887 21.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.070 3.930 3 H 0.076 0.924 4 N -0.333 5.333 5 C -0.318 4.318 6 H 0.080 0.920 7 C -0.218 4.218 8 N -0.596 5.596 9 Si 0.730 3.270 10 H -0.218 1.218 11 H -0.222 1.222 12 H -0.218 1.218 13 C 0.045 3.955 14 H 0.085 0.915 15 C -0.167 4.167 16 C -0.157 4.157 17 C -0.172 4.172 18 C -0.021 4.021 19 N -0.345 5.345 20 C 0.294 3.706 21 O -0.286 6.286 22 C -0.075 4.075 23 C -0.121 4.121 24 C -0.110 4.110 25 C -0.141 4.141 26 C 0.352 3.648 27 N -0.416 5.416 28 O -0.419 6.419 29 C -0.079 4.079 30 C -0.104 4.104 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.210 0.790 35 H 0.058 0.942 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.104 0.896 43 H 0.081 0.919 44 H 0.152 0.848 45 H 0.145 0.855 46 H 0.231 0.769 47 H 0.235 0.765 48 H 0.157 0.843 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.825 1.539 -18.975 20.583 hybrid contribution 0.508 -0.492 0.836 1.095 sum 8.333 1.047 -18.139 19.989 Atomic orbital electron populations 1.22579 0.99668 1.00700 1.00000 1.20433 0.90558 0.96789 0.85174 0.92382 1.42244 1.71323 1.18234 1.01483 1.18981 1.29843 0.98804 0.84211 0.91964 1.24538 1.02901 0.97098 0.97238 1.69624 1.48395 1.13760 1.27786 0.86380 0.77224 0.78308 0.85050 1.21824 1.22152 1.21772 1.21517 0.78715 0.99633 0.95605 0.91499 1.22027 0.99793 1.00912 0.93956 1.21525 0.95485 1.00718 0.97942 1.21910 0.96133 1.01529 0.97620 1.21842 0.97016 0.98902 0.84331 1.47792 1.09432 1.57748 1.19541 1.18436 0.85716 0.81961 0.84451 1.91355 1.66714 1.47208 1.23316 1.20520 0.95292 0.94280 0.97361 1.21268 0.92724 0.99454 0.98660 1.21137 0.95822 0.94985 0.99049 1.19882 0.93097 0.94757 1.06361 1.18372 0.86112 0.84752 0.75533 1.43759 1.12463 1.11792 1.73622 1.90804 1.79401 1.20429 1.51289 1.21189 0.92052 0.99519 0.95173 1.21181 0.95561 0.95811 0.97828 0.92671 0.94369 0.93657 0.78958 0.94191 0.90479 0.91635 0.92102 0.91927 0.91656 0.91321 0.89619 0.91864 0.84751 0.85467 0.76884 0.76531 0.84346 0.84575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 8.61 37.16 0.32 -2.76 16 2 C 0.18 3.62 1.84 -67.93 -0.12 3.50 16 3 H 0.06 1.29 6.28 -51.93 -0.33 0.97 16 4 N -0.69 -17.58 3.26 -53.43 -0.17 -17.75 16 5 C -0.19 -5.36 8.31 -15.06 -0.13 -5.49 16 6 H 0.06 1.80 7.83 -52.49 -0.41 1.39 16 7 C -0.02 -0.72 5.50 -17.43 -0.10 -0.82 16 8 N -0.94 -29.61 13.06 55.49 0.72 -28.88 16 9 Si 0.90 23.87 29.55 -169.99 -5.02 18.84 16 10 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 11 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 12 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 13 C 0.15 2.36 2.62 -67.60 -0.18 2.18 16 14 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 15 C -0.13 -1.57 4.39 -26.61 -0.12 -1.69 16 16 C -0.12 -1.16 5.88 -26.69 -0.16 -1.32 16 17 C -0.13 -1.24 6.08 -26.61 -0.16 -1.40 16 18 C 0.10 1.11 5.46 -3.71 -0.02 1.09 16 19 N -0.61 -9.15 2.97 -166.25 -0.49 -9.64 16 20 C 0.51 9.23 6.96 -12.24 -0.09 9.14 16 21 O -0.42 -9.77 10.11 5.35 0.05 -9.71 16 22 C -0.07 -1.07 4.91 -104.90 -0.52 -1.58 16 23 C -0.10 -1.25 7.40 -39.24 -0.29 -1.54 16 24 C -0.09 -0.92 9.53 -39.24 -0.37 -1.29 16 25 C -0.14 -1.62 5.88 -104.90 -0.62 -2.24 16 26 C 0.57 6.60 8.05 -12.24 -0.10 6.50 16 27 N -0.85 -6.01 8.82 30.57 0.27 -5.74 16 28 O -0.54 -8.38 17.17 5.35 0.09 -8.28 16 29 C -0.06 -0.79 9.58 -39.25 -0.38 -1.16 16 30 C -0.09 -1.21 9.73 -39.24 -0.38 -1.59 16 31 H 0.05 1.11 7.98 -51.93 -0.41 0.69 16 32 H 0.04 0.57 6.45 -51.93 -0.33 0.23 16 33 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.38 10.33 7.68 -40.82 -0.31 10.01 16 35 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.08 0.90 6.71 -51.93 -0.35 0.55 16 37 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.09 0.86 4.72 -51.93 -0.25 0.61 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.13 1.49 7.29 -52.49 -0.38 1.11 16 45 H 0.13 0.78 6.39 -52.49 -0.34 0.45 16 46 H 0.40 1.73 6.85 -40.82 -0.28 1.45 16 47 H 0.40 2.26 8.93 -40.82 -0.36 1.90 16 48 H 0.14 1.73 7.64 -52.49 -0.40 1.33 16 49 H 0.14 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 383.21 15.07 5.77 5.77 Total: -1.00 -36.80 383.21 -9.27 -46.06 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -7.09 Total: 9.78 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -3.40 Total: -0.46 kcal Atomic # 7 Polarization: -62.34 SS G_CDS: 0.33 Total: -62.01 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: 0.15 Total: -18.00 kcal Atomic # 14 Polarization: 23.87 SS G_CDS: -5.02 Total: 18.84 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.80 -9.27 -46.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752157205.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.996 kcal (2) G-P(sol) polarization free energy of solvation -36.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds