Wall clock time and date at job start Wed Apr 1 2020 04:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47435 * 2 1 4 4 N 1.46506 * 109.47284 * 119.99994 * 2 1 3 5 5 C 1.36936 * 119.99890 * 286.85398 * 4 2 1 6 6 H 1.08000 * 119.99992 * 0.02562 * 5 4 2 7 7 C 1.38810 * 119.99875 * 180.27333 * 5 4 2 8 8 N 1.31610 * 120.00014 * 359.72933 * 7 5 4 9 9 Si 1.86805 * 119.99809 * 179.72470 * 7 5 4 10 10 H 1.48507 * 109.46980 * 59.99974 * 9 7 5 11 11 H 1.48500 * 109.46880 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47167 * 300.00179 * 9 7 5 13 13 C 1.52998 * 109.47232 * 239.99666 * 2 1 3 14 14 H 1.09005 * 109.58961 * 286.91595 * 13 2 1 15 15 C 1.53191 * 109.58829 * 47.34291 * 13 2 1 16 16 C 1.53035 * 109.31824 * 174.42169 * 15 13 2 17 17 C 1.53037 * 109.53749 * 298.63648 * 16 15 13 18 18 C 1.53188 * 109.31426 * 61.36608 * 17 16 15 19 19 N 1.46931 * 108.77348 * 305.36049 * 18 17 16 20 20 C 1.34774 * 120.63624 * 233.63272 * 19 18 17 21 21 O 1.21523 * 120.00321 * 183.12019 * 20 19 18 22 22 C 1.48037 * 119.99619 * 3.11518 * 20 19 18 23 23 C 1.39555 * 120.00443 * 307.18213 * 22 20 19 24 24 C 1.37817 * 120.00328 * 179.74571 * 23 22 20 25 25 C 1.39563 * 119.99345 * 0.54816 * 24 23 22 26 26 C 1.48035 * 119.99600 * 179.72399 * 25 24 23 27 27 N 1.34783 * 120.00152 * 359.97438 * 26 25 24 28 28 O 1.21523 * 120.00065 * 179.97438 * 26 25 24 29 29 C 1.39549 * 120.00272 * 359.69950 * 25 24 23 30 30 C 1.37820 * 120.00211 * 0.02640 * 29 25 24 31 31 H 1.08997 * 109.46827 * 299.99917 * 1 2 3 32 32 H 1.09001 * 109.46995 * 60.00470 * 1 2 3 33 33 H 1.09000 * 109.47112 * 180.02562 * 1 2 3 34 34 H 0.97002 * 120.00214 * 106.85546 * 4 2 1 35 35 H 0.97003 * 120.00334 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.49905 * 294.37606 * 15 13 2 37 37 H 1.09008 * 109.49624 * 54.46798 * 15 13 2 38 38 H 1.08997 * 109.46223 * 178.61394 * 16 15 13 39 39 H 1.08998 * 109.44782 * 58.65122 * 16 15 13 40 40 H 1.08995 * 109.49629 * 301.40880 * 17 16 15 41 41 H 1.09004 * 109.49748 * 181.31627 * 17 16 15 42 42 H 1.09002 * 109.58858 * 185.58190 * 18 17 16 43 43 H 1.08996 * 109.70965 * 65.21692 * 18 17 16 44 44 H 1.08002 * 119.99429 * 0.02562 * 23 22 20 45 45 H 1.07999 * 120.00420 * 180.24707 * 24 23 22 46 46 H 0.97004 * 119.99805 * 359.97438 * 27 26 25 47 47 H 0.97000 * 120.00060 * 179.97438 * 27 26 25 48 48 H 1.08002 * 120.00143 * 180.02562 * 29 25 24 49 49 H 1.07994 * 119.99988 * 180.02562 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.9224 -0.0878 2.4220 6 1 1.4864 0.8966 2.5070 7 6 2.3903 -0.7398 3.5546 8 7 2.9213 -1.9395 3.4511 9 14 2.2665 0.0859 5.2257 10 1 0.8411 0.3650 5.5354 11 1 2.8316 -0.8122 6.2646 12 1 3.0275 1.3609 5.2055 13 6 2.0400 -0.7213 -1.2492 14 1 1.8801 -1.7943 -1.1425 15 6 1.2892 -0.2073 -2.4816 16 6 1.8976 -0.8287 -3.7408 17 6 3.3650 -0.4107 -3.8600 18 6 4.1394 -0.9271 -2.6434 19 7 3.4739 -0.4519 -1.4227 20 6 4.1655 0.2188 -0.4801 21 8 3.6173 0.5571 0.5503 22 6 5.5930 0.5434 -0.7001 23 6 6.4924 -0.4654 -1.0478 24 6 7.8204 -0.1624 -1.2578 25 6 8.2678 1.1515 -1.1115 26 6 9.6953 1.4760 -1.3310 27 7 10.5631 0.5025 -1.6717 28 8 10.0849 2.6200 -1.2041 29 6 7.3693 2.1593 -0.7587 30 6 6.0403 1.8573 -0.5543 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 2.4097 -1.5749 1.1199 35 1 3.2480 -2.3953 4.2426 36 1 0.2379 -0.4863 -2.4097 37 1 1.3752 0.8781 -2.5335 38 1 1.3494 -0.4837 -4.6173 39 1 1.8335 -1.9149 -3.6767 40 1 3.4315 0.6765 -3.8990 41 1 3.7913 -0.8345 -4.7693 42 1 5.1613 -0.5490 -2.6732 43 1 4.1527 -2.0170 -2.6516 44 1 6.1469 -1.4829 -1.1568 45 1 8.5157 -0.9424 -1.5308 46 1 10.2522 -0.4108 -1.7726 47 1 11.4984 0.7152 -1.8159 48 1 7.7155 3.1761 -0.6459 49 1 5.3450 2.6373 -0.2817 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752157205.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:58 Heat of formation + Delta-G solvation = -19.049841 kcal Electronic energy + Delta-G solvation = -31614.776383 eV Core-core repulsion = 27542.415018 eV Total energy + Delta-G solvation = -4072.361365 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.82737 -40.91904 -39.23039 -38.04192 -36.84238 -34.93300 -34.28274 -33.71023 -32.08173 -31.96170 -31.43100 -29.35085 -27.02017 -26.00120 -25.13677 -24.28424 -23.58760 -22.34771 -21.61326 -21.28833 -20.43118 -19.23526 -18.87560 -18.02418 -17.75435 -16.95574 -16.76535 -16.20917 -16.05148 -15.88071 -15.83422 -15.53951 -15.41984 -15.29172 -14.98096 -14.70608 -14.48036 -14.34099 -14.20819 -13.84000 -13.60944 -13.47361 -13.45153 -13.30191 -12.97022 -12.77727 -12.55085 -12.39409 -12.22127 -12.10511 -11.92397 -11.67610 -11.58262 -11.38659 -11.30271 -11.16707 -10.77631 -10.76186 -10.18119 -10.05014 -9.72972 -9.37702 -8.57662 -7.76976 -4.93741 -0.44808 0.28015 1.42510 1.46316 1.51008 1.58258 2.05958 2.17910 2.46427 2.65558 2.77937 3.50884 3.56704 3.73679 3.81831 3.86397 3.88229 3.99510 4.05846 4.15755 4.24432 4.34059 4.37163 4.39421 4.42457 4.60684 4.65412 4.75876 4.80081 4.89042 4.90273 4.96554 5.07419 5.08237 5.10785 5.15570 5.21192 5.21300 5.29745 5.33364 5.44295 5.49962 5.57651 5.63206 5.69067 5.85383 5.93725 6.37601 6.45104 6.64126 7.24714 7.49279 7.56092 8.30731 8.53519 9.48185 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008710 B = 0.004222 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3213.907320 B = 6630.144738 C = 9047.582050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.178 3.822 3 H 0.033 0.967 4 N -0.696 5.696 5 C -0.170 4.170 6 H 0.052 0.948 7 C -0.088 4.088 8 N -0.977 5.977 9 Si 0.952 3.048 10 H -0.281 1.281 11 H -0.297 1.297 12 H -0.295 1.295 13 C 0.152 3.848 14 H 0.061 0.939 15 C -0.121 4.121 16 C -0.115 4.115 17 C -0.128 4.128 18 C 0.095 3.905 19 N -0.603 5.603 20 C 0.509 3.491 21 O -0.491 6.491 22 C -0.093 4.093 23 C -0.100 4.100 24 C -0.069 4.069 25 C -0.137 4.137 26 C 0.565 3.435 27 N -0.825 5.825 28 O -0.587 6.587 29 C -0.068 4.068 30 C -0.098 4.098 31 H 0.028 0.972 32 H 0.075 0.925 33 H 0.046 0.954 34 H 0.364 0.636 35 H 0.241 0.759 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.079 0.921 44 H 0.150 0.850 45 H 0.177 0.823 46 H 0.418 0.582 47 H 0.415 0.585 48 H 0.136 0.864 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.291 -0.963 -23.113 24.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.070 3.930 3 H 0.051 0.949 4 N -0.335 5.335 5 C -0.304 4.304 6 H 0.070 0.930 7 C -0.278 4.278 8 N -0.632 5.632 9 Si 0.784 3.216 10 H -0.208 1.208 11 H -0.224 1.224 12 H -0.222 1.222 13 C 0.048 3.952 14 H 0.079 0.921 15 C -0.160 4.160 16 C -0.152 4.152 17 C -0.166 4.166 18 C -0.027 4.027 19 N -0.339 5.339 20 C 0.295 3.705 21 O -0.363 6.363 22 C -0.096 4.096 23 C -0.119 4.119 24 C -0.087 4.087 25 C -0.140 4.140 26 C 0.351 3.649 27 N -0.390 5.390 28 O -0.468 6.468 29 C -0.087 4.087 30 C -0.117 4.117 31 H 0.047 0.953 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.195 0.805 35 H 0.050 0.950 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.097 0.903 44 H 0.167 0.833 45 H 0.195 0.805 46 H 0.251 0.749 47 H 0.248 0.752 48 H 0.154 0.846 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.031 0.113 -22.305 24.064 hybrid contribution 0.212 -0.020 1.663 1.677 sum 9.243 0.094 -20.641 22.616 Atomic orbital electron populations 1.22435 0.98025 1.00907 1.00549 1.20526 0.91456 0.95612 0.85426 0.94900 1.42293 1.71391 1.17659 1.02125 1.19165 1.27491 0.97932 0.85789 0.92962 1.25137 1.04400 0.98063 1.00175 1.69763 1.50584 1.15018 1.27819 0.85485 0.77408 0.77017 0.81661 1.20817 1.22363 1.22220 1.21406 0.79838 0.98647 0.95289 0.92137 1.21979 0.99970 1.00613 0.93413 1.21522 0.95751 1.00983 0.96948 1.21901 0.95741 1.01197 0.97794 1.22186 0.97630 0.99829 0.83013 1.47928 1.09179 1.56477 1.20273 1.18988 0.86933 0.80731 0.83891 1.91307 1.68421 1.50530 1.26051 1.20382 0.94140 0.95345 0.99752 1.21446 0.93156 0.99235 0.98035 1.21540 0.95521 0.95183 0.96456 1.20056 0.93237 0.95213 1.05540 1.18343 0.86284 0.84769 0.75487 1.43540 1.12455 1.11744 1.71227 1.90795 1.79964 1.22416 1.53606 1.21199 0.91732 1.00148 0.95625 1.21083 0.96041 0.95611 0.98924 0.95309 0.90585 0.93509 0.80470 0.95043 0.89523 0.92221 0.89901 0.91166 0.92423 0.88160 0.88506 0.90316 0.83271 0.80540 0.74864 0.75244 0.84605 0.86040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.84 8.61 71.98 0.62 -5.22 16 2 C 0.18 7.40 1.84 44.99 0.08 7.48 16 3 H 0.03 1.56 6.28 -2.39 -0.01 1.55 16 4 N -0.70 -36.93 3.26 -322.94 -1.05 -37.99 16 5 C -0.17 -10.25 8.31 84.03 0.70 -9.55 16 6 H 0.05 3.17 7.83 -2.91 -0.02 3.15 16 7 C -0.09 -5.45 5.50 84.86 0.47 -4.99 16 8 N -0.98 -63.45 13.06 21.65 0.28 -63.17 16 9 Si 0.95 50.89 29.55 68.60 2.03 52.92 16 10 H -0.28 -14.41 7.11 99.48 0.71 -13.70 16 11 H -0.30 -15.84 7.11 99.48 0.71 -15.13 16 12 H -0.29 -15.73 7.11 99.48 0.71 -15.03 16 13 C 0.15 4.77 2.62 44.97 0.12 4.89 16 14 H 0.06 2.00 8.10 -2.38 -0.02 1.98 16 15 C -0.12 -2.72 4.39 30.67 0.13 -2.59 16 16 C -0.11 -1.80 5.88 30.62 0.18 -1.62 16 17 C -0.13 -1.91 6.08 30.67 0.19 -1.72 16 18 C 0.09 1.82 5.46 86.36 0.47 2.29 16 19 N -0.60 -17.95 2.97 -798.19 -2.37 -20.32 16 20 C 0.51 19.05 6.96 86.84 0.60 19.65 16 21 O -0.49 -24.33 10.11 -3.79 -0.04 -24.37 16 22 C -0.09 -2.81 4.91 -20.04 -0.10 -2.91 16 23 C -0.10 -2.23 7.40 22.49 0.17 -2.07 16 24 C -0.07 -1.14 9.53 22.49 0.21 -0.92 16 25 C -0.14 -2.98 5.88 -20.04 -0.12 -3.09 16 26 C 0.57 11.94 8.05 86.84 0.70 12.64 16 27 N -0.82 -8.58 8.82 -175.47 -1.55 -10.13 16 28 O -0.59 -17.69 17.17 -3.79 -0.07 -17.76 16 29 C -0.07 -1.80 9.58 22.49 0.22 -1.58 16 30 C -0.10 -2.92 9.73 22.49 0.22 -2.70 16 31 H 0.03 1.17 7.98 -2.39 -0.02 1.15 16 32 H 0.08 2.18 6.45 -2.39 -0.02 2.16 16 33 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.36 20.81 7.68 -92.71 -0.71 20.10 16 35 H 0.24 15.35 8.31 -92.71 -0.77 14.58 16 36 H 0.09 1.79 6.71 -2.39 -0.02 1.77 16 37 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 42 H 0.10 1.66 4.72 -2.39 -0.01 1.65 16 43 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.15 2.87 7.29 -2.91 -0.02 2.85 16 45 H 0.18 1.13 6.39 -2.91 -0.02 1.11 16 46 H 0.42 1.51 6.85 -92.71 -0.64 0.88 16 47 H 0.41 3.22 8.93 -92.71 -0.83 2.39 16 48 H 0.14 3.57 7.64 -2.91 -0.02 3.55 16 49 H 0.12 3.83 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -86.63 383.21 0.93 -85.70 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: -1.17 Total: 27.12 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 4.86 Total: 7.99 kcal Atomic # 7 Polarization: -126.91 SS G_CDS: -4.69 Total: -131.60 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -0.10 Total: -42.13 kcal Atomic # 14 Polarization: 50.89 SS G_CDS: 2.03 Total: 52.92 kcal Total: -86.63 0.93 -85.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752157205.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.655 kcal (2) G-P(sol) polarization free energy of solvation -86.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds