Wall clock time and date at job start Wed Apr 1 2020 04:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.47022 * 2 1 4 4 N 1.46500 * 109.47230 * 239.99712 * 2 1 3 5 5 C 1.36939 * 119.99987 * 74.21554 * 4 2 1 6 6 H 1.07999 * 119.99695 * 359.97438 * 5 4 2 7 7 C 1.38805 * 120.00051 * 179.97438 * 5 4 2 8 8 N 1.31616 * 120.00164 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99854 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46493 * 90.00612 * 9 7 5 11 11 H 1.48503 * 109.46899 * 210.00110 * 9 7 5 12 12 H 1.48498 * 109.47091 * 330.00252 * 9 7 5 13 13 C 1.53002 * 109.47124 * 119.99793 * 2 1 3 14 14 H 1.08996 * 109.58406 * 71.00856 * 13 2 1 15 15 C 1.53190 * 109.70319 * 310.65117 * 13 2 1 16 16 C 1.53039 * 109.31475 * 185.50609 * 15 13 2 17 17 C 1.53042 * 109.53693 * 61.36646 * 16 15 13 18 18 C 1.53623 * 109.24243 * 298.51247 * 17 16 15 19 19 N 1.46924 * 109.58769 * 191.29214 * 13 2 1 20 20 C 1.34780 * 120.63294 * 353.51941 * 19 13 2 21 21 O 1.21535 * 119.99509 * 359.79694 * 20 19 13 22 22 C 1.48025 * 120.00307 * 179.80458 * 20 19 13 23 23 C 1.39557 * 120.00215 * 33.27790 * 22 20 19 24 24 C 1.37820 * 120.00079 * 179.76385 * 23 22 20 25 25 C 1.39552 * 120.00019 * 0.51342 * 24 23 22 26 26 C 1.48029 * 120.00355 * 179.76483 * 25 24 23 27 27 N 1.34783 * 119.99922 * 359.97438 * 26 25 24 28 28 O 1.21527 * 120.00582 * 179.97438 * 26 25 24 29 29 C 1.39563 * 119.99869 * 359.73755 * 25 24 23 30 30 C 1.37817 * 120.00077 * 0.02562 * 29 25 24 31 31 H 1.09001 * 109.47090 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46545 * 300.00195 * 1 2 3 33 33 H 1.08990 * 109.47046 * 60.00075 * 1 2 3 34 34 H 0.96994 * 120.00024 * 254.21464 * 4 2 1 35 35 H 0.96996 * 120.00537 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.50243 * 305.46364 * 15 13 2 37 37 H 1.09003 * 109.49828 * 65.56171 * 15 13 2 38 38 H 1.08998 * 109.46246 * 181.38835 * 16 15 13 39 39 H 1.08997 * 109.46482 * 301.35077 * 16 15 13 40 40 H 1.09001 * 109.49371 * 58.58720 * 17 16 15 41 41 H 1.09000 * 109.49864 * 178.65149 * 17 16 15 42 42 H 1.08997 * 109.74066 * 295.11554 * 18 17 16 43 43 H 1.09004 * 109.66653 * 174.54618 * 18 17 16 44 44 H 1.08005 * 119.99645 * 359.97438 * 23 22 20 45 45 H 1.08005 * 119.99714 * 180.25580 * 24 23 22 46 46 H 0.97004 * 119.99467 * 359.97438 * 27 26 25 47 47 H 0.96993 * 120.00511 * 180.02562 * 27 26 25 48 48 H 1.07996 * 119.99863 * 180.02562 * 29 25 24 49 49 H 1.07994 * 120.00182 * 179.97438 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 1.9425 -0.0789 -2.4189 6 1 1.5222 0.9125 -2.5015 7 6 2.4057 -0.7331 -3.5522 8 7 2.9174 -1.9415 -3.4515 9 14 2.3015 0.1011 -5.2203 10 1 3.5438 0.8774 -5.4639 11 1 2.1452 -0.9280 -6.2795 12 1 1.1328 1.0170 -5.2436 13 6 2.0401 -0.7212 1.2493 14 1 1.8468 -1.7901 1.1586 15 6 1.3264 -0.1736 2.4893 16 6 1.9386 -0.8008 3.7439 17 6 3.4194 -0.4250 3.8335 18 6 4.1579 -0.9803 2.6062 19 7 3.4840 -0.4924 1.3951 20 6 4.1784 0.1480 0.4337 21 8 3.6110 0.5391 -0.5673 22 6 5.6320 0.3748 0.5971 23 6 6.4130 -0.5632 1.2738 24 6 7.7672 -0.3543 1.4216 25 6 8.3558 0.8003 0.9039 26 6 9.8094 1.0271 1.0672 27 7 10.5645 0.1188 1.7163 28 8 10.3221 2.0324 0.6160 29 6 7.5739 1.7408 0.2317 30 6 6.2205 1.5296 0.0797 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 2.3955 -1.5812 -1.1219 35 1 3.2407 -2.3989 -4.2435 36 1 1.4450 0.9092 2.5289 37 1 0.2664 -0.4224 2.4385 38 1 1.4161 -0.4315 4.6264 39 1 1.8417 -1.8852 3.6921 40 1 3.5183 0.6602 3.8604 41 1 3.8490 -0.8521 4.7397 42 1 4.1338 -2.0699 2.6239 43 1 5.1919 -0.6355 2.6131 44 1 5.9566 -1.4544 1.6787 45 1 8.3722 -1.0823 1.9418 46 1 10.1553 -0.6834 2.0768 47 1 11.5170 0.2676 1.8237 48 1 8.0295 2.6341 -0.1693 49 1 5.6155 2.2576 -0.4401 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752157207.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:08 Heat of formation + Delta-G solvation = 24.454579 kcal Electronic energy + Delta-G solvation = -31685.214024 eV Core-core repulsion = 27614.739153 eV Total energy + Delta-G solvation = -4070.474871 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.71312 -39.85491 -38.14699 -36.81012 -35.23500 -34.06101 -32.94413 -32.22413 -30.96738 -30.91054 -29.82651 -27.79529 -25.83201 -24.36629 -24.08213 -23.13481 -22.29397 -21.30057 -20.49142 -20.00099 -19.27488 -18.25364 -17.19262 -16.88957 -16.53532 -15.74281 -15.28469 -15.03719 -14.88817 -14.80569 -14.58536 -14.39698 -14.33516 -13.81808 -13.64919 -13.45290 -13.31097 -13.03192 -12.92954 -12.46704 -12.26578 -12.22177 -12.06493 -11.96651 -11.42485 -11.23475 -11.12277 -10.85510 -10.79415 -10.65495 -10.58302 -10.38507 -10.23885 -10.11940 -9.97602 -9.71445 -9.43950 -9.04193 -8.94290 -8.64721 -8.33680 -8.02249 -6.50895 -5.51050 -2.70261 0.56306 1.28340 2.58298 3.25750 3.34732 3.42820 3.58275 3.63198 3.63701 3.95352 4.54230 4.64420 4.73899 4.76119 4.79361 4.87298 4.92245 5.05227 5.17993 5.26132 5.36806 5.39812 5.47564 5.59446 5.64654 5.75585 5.79610 5.84661 5.88069 5.89859 5.96517 6.07102 6.10328 6.10913 6.14015 6.22267 6.32788 6.39074 6.45789 6.47873 6.51371 6.74074 6.79119 6.92615 7.04333 7.06595 7.36322 7.92587 7.94222 8.01283 8.66136 8.92236 9.78157 10.34586 10.69782 11.73242 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008598 B = 0.004352 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3255.693223 B = 6432.264200 C = 9004.513889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.180 3.820 3 H 0.061 0.939 4 N -0.690 5.690 5 C -0.184 4.184 6 H 0.064 0.936 7 C -0.025 4.025 8 N -0.943 5.943 9 Si 0.898 3.102 10 H -0.295 1.295 11 H -0.296 1.296 12 H -0.286 1.286 13 C 0.149 3.851 14 H 0.066 0.934 15 C -0.128 4.128 16 C -0.119 4.119 17 C -0.134 4.134 18 C 0.082 3.918 19 N -0.608 5.608 20 C 0.506 3.494 21 O -0.420 6.420 22 C -0.074 4.074 23 C -0.117 4.117 24 C -0.095 4.095 25 C -0.136 4.136 26 C 0.565 3.435 27 N -0.853 5.853 28 O -0.541 6.541 29 C -0.062 4.062 30 C -0.077 4.077 31 H 0.044 0.956 32 H 0.037 0.963 33 H 0.054 0.946 34 H 0.377 0.623 35 H 0.248 0.752 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.104 0.896 44 H 0.146 0.854 45 H 0.127 0.873 46 H 0.401 0.599 47 H 0.404 0.596 48 H 0.139 0.861 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.773 0.354 20.452 21.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.070 3.930 3 H 0.078 0.922 4 N -0.330 5.330 5 C -0.316 4.316 6 H 0.082 0.918 7 C -0.218 4.218 8 N -0.594 5.594 9 Si 0.731 3.269 10 H -0.223 1.223 11 H -0.223 1.223 12 H -0.212 1.212 13 C 0.046 3.954 14 H 0.084 0.916 15 C -0.167 4.167 16 C -0.157 4.157 17 C -0.172 4.172 18 C -0.041 4.041 19 N -0.345 5.345 20 C 0.291 3.709 21 O -0.287 6.287 22 C -0.078 4.078 23 C -0.135 4.135 24 C -0.113 4.113 25 C -0.140 4.140 26 C 0.352 3.648 27 N -0.417 5.417 28 O -0.419 6.419 29 C -0.081 4.081 30 C -0.096 4.096 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.210 0.790 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.122 0.878 44 H 0.164 0.836 45 H 0.145 0.855 46 H 0.231 0.769 47 H 0.234 0.766 48 H 0.156 0.844 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.566 1.412 19.327 20.803 hybrid contribution 0.437 -0.505 -0.661 0.939 sum 8.003 0.907 18.667 20.330 Atomic orbital electron populations 1.22577 0.99684 1.00680 1.00024 1.20453 0.90506 0.96908 0.85099 0.92151 1.42302 1.71619 1.17216 1.01850 1.19029 1.30188 0.98145 0.84252 0.91838 1.24548 1.03041 0.96955 0.97300 1.69634 1.48910 1.13135 1.27746 0.86289 0.77403 0.78090 0.85128 1.22265 1.22317 1.21180 1.21504 0.78657 0.99632 0.95650 0.91626 1.22018 0.99879 1.00813 0.93986 1.21526 0.95475 1.00746 0.97935 1.22001 0.96120 1.01492 0.97603 1.22549 0.98265 0.98665 0.84614 1.47696 1.08406 1.59125 1.19287 1.18361 0.85916 0.82591 0.84023 1.91318 1.67334 1.44312 1.25702 1.20518 0.95150 0.95224 0.96934 1.21646 0.93421 1.00032 0.98440 1.21141 0.94907 0.96077 0.99202 1.19894 0.92814 0.97321 1.03946 1.18385 0.86863 0.82562 0.77004 1.43754 1.12620 1.25000 1.60290 1.90807 1.74198 1.28045 1.48810 1.21216 0.92940 0.98573 0.95389 1.21255 0.94345 0.96904 0.97089 0.93694 0.94370 0.92647 0.78956 0.94192 0.91639 0.90562 0.92158 0.91974 0.91646 0.91382 0.91782 0.87808 0.83619 0.85524 0.76923 0.76554 0.84351 0.84218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 8.69 37.16 0.32 -2.75 16 2 C 0.18 3.61 1.82 -67.93 -0.12 3.49 16 3 H 0.06 1.34 6.34 -51.93 -0.33 1.01 16 4 N -0.69 -17.44 3.22 -53.42 -0.17 -17.61 16 5 C -0.18 -5.27 8.24 -15.06 -0.12 -5.39 16 6 H 0.06 1.83 7.83 -52.49 -0.41 1.42 16 7 C -0.02 -0.74 5.50 -17.43 -0.10 -0.84 16 8 N -0.94 -29.54 13.06 55.49 0.72 -28.81 16 9 Si 0.90 23.81 29.55 -169.99 -5.02 18.79 16 10 H -0.29 -7.91 7.11 56.52 0.40 -7.50 16 11 H -0.30 -7.91 7.11 56.52 0.40 -7.50 16 12 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 13 C 0.15 2.37 2.59 -67.60 -0.17 2.19 16 14 H 0.07 1.10 8.13 -51.93 -0.42 0.68 16 15 C -0.13 -1.57 4.48 -26.61 -0.12 -1.69 16 16 C -0.12 -1.16 5.88 -26.69 -0.16 -1.32 16 17 C -0.13 -1.23 6.10 -26.39 -0.16 -1.39 16 18 C 0.08 0.88 4.89 -3.48 -0.02 0.86 16 19 N -0.61 -9.20 2.97 -165.99 -0.49 -9.69 16 20 C 0.51 9.26 7.19 -12.25 -0.09 9.17 16 21 O -0.42 -9.73 9.67 5.34 0.05 -9.68 16 22 C -0.07 -1.14 5.49 -104.90 -0.58 -1.72 16 23 C -0.12 -1.39 7.39 -39.24 -0.29 -1.68 16 24 C -0.09 -0.94 9.53 -39.24 -0.37 -1.32 16 25 C -0.14 -1.65 5.88 -104.90 -0.62 -2.26 16 26 C 0.57 6.72 8.05 -12.24 -0.10 6.62 16 27 N -0.85 -6.06 8.82 30.57 0.27 -5.79 16 28 O -0.54 -8.54 17.17 5.34 0.09 -8.45 16 29 C -0.06 -0.85 9.58 -39.24 -0.38 -1.23 16 30 C -0.08 -1.16 9.59 -39.24 -0.38 -1.54 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.04 0.57 6.45 -51.93 -0.34 0.23 16 33 H 0.05 1.11 8.01 -51.93 -0.42 0.69 16 34 H 0.38 10.31 7.70 -40.82 -0.31 10.00 16 35 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.89 6.70 -51.93 -0.35 0.54 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 43 H 0.10 1.00 3.72 -51.97 -0.19 0.81 16 44 H 0.15 1.47 5.45 -52.48 -0.29 1.18 16 45 H 0.13 0.74 6.39 -52.48 -0.34 0.41 16 46 H 0.40 1.70 6.85 -40.82 -0.28 1.42 16 47 H 0.40 2.29 8.93 -40.82 -0.36 1.93 16 48 H 0.14 1.83 7.64 -52.49 -0.40 1.43 16 49 H 0.14 2.18 7.97 -52.49 -0.42 1.76 16 LS Contribution 380.05 15.07 5.73 5.73 Total: -1.00 -36.70 380.05 -9.21 -45.92 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -6.95 Total: 10.40 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -3.44 Total: -0.79 kcal Atomic # 7 Polarization: -62.24 SS G_CDS: 0.33 Total: -61.90 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: 0.14 Total: -18.13 kcal Atomic # 14 Polarization: 23.81 SS G_CDS: -5.02 Total: 18.79 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.70 -9.21 -45.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752157207.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.371 kcal (2) G-P(sol) polarization free energy of solvation -36.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds