Wall clock time and date at job start Wed Apr 1 2020 04:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.47022 * 2 1 4 4 N 1.46500 * 109.47230 * 239.99712 * 2 1 3 5 5 C 1.36939 * 119.99987 * 74.21554 * 4 2 1 6 6 H 1.07999 * 119.99695 * 359.97438 * 5 4 2 7 7 C 1.38805 * 120.00051 * 179.97438 * 5 4 2 8 8 N 1.31616 * 120.00164 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99854 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46493 * 90.00612 * 9 7 5 11 11 H 1.48503 * 109.46899 * 210.00110 * 9 7 5 12 12 H 1.48498 * 109.47091 * 330.00252 * 9 7 5 13 13 C 1.53002 * 109.47124 * 119.99793 * 2 1 3 14 14 H 1.08996 * 109.58406 * 71.00856 * 13 2 1 15 15 C 1.53190 * 109.70319 * 310.65117 * 13 2 1 16 16 C 1.53039 * 109.31475 * 185.50609 * 15 13 2 17 17 C 1.53042 * 109.53693 * 61.36646 * 16 15 13 18 18 C 1.53623 * 109.24243 * 298.51247 * 17 16 15 19 19 N 1.46924 * 109.58769 * 191.29214 * 13 2 1 20 20 C 1.34780 * 120.63294 * 353.51941 * 19 13 2 21 21 O 1.21535 * 119.99509 * 359.79694 * 20 19 13 22 22 C 1.48025 * 120.00307 * 179.80458 * 20 19 13 23 23 C 1.39557 * 120.00215 * 33.27790 * 22 20 19 24 24 C 1.37820 * 120.00079 * 179.76385 * 23 22 20 25 25 C 1.39552 * 120.00019 * 0.51342 * 24 23 22 26 26 C 1.48029 * 120.00355 * 179.76483 * 25 24 23 27 27 N 1.34783 * 119.99922 * 359.97438 * 26 25 24 28 28 O 1.21527 * 120.00582 * 179.97438 * 26 25 24 29 29 C 1.39563 * 119.99869 * 359.73755 * 25 24 23 30 30 C 1.37817 * 120.00077 * 0.02562 * 29 25 24 31 31 H 1.09001 * 109.47090 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46545 * 300.00195 * 1 2 3 33 33 H 1.08990 * 109.47046 * 60.00075 * 1 2 3 34 34 H 0.96994 * 120.00024 * 254.21464 * 4 2 1 35 35 H 0.96996 * 120.00537 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.50243 * 305.46364 * 15 13 2 37 37 H 1.09003 * 109.49828 * 65.56171 * 15 13 2 38 38 H 1.08998 * 109.46246 * 181.38835 * 16 15 13 39 39 H 1.08997 * 109.46482 * 301.35077 * 16 15 13 40 40 H 1.09001 * 109.49371 * 58.58720 * 17 16 15 41 41 H 1.09000 * 109.49864 * 178.65149 * 17 16 15 42 42 H 1.08997 * 109.74066 * 295.11554 * 18 17 16 43 43 H 1.09004 * 109.66653 * 174.54618 * 18 17 16 44 44 H 1.08005 * 119.99645 * 359.97438 * 23 22 20 45 45 H 1.08005 * 119.99714 * 180.25580 * 24 23 22 46 46 H 0.97004 * 119.99467 * 359.97438 * 27 26 25 47 47 H 0.96993 * 120.00511 * 180.02562 * 27 26 25 48 48 H 1.07996 * 119.99863 * 180.02562 * 29 25 24 49 49 H 1.07994 * 120.00182 * 179.97438 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 1.9425 -0.0789 -2.4189 6 1 1.5222 0.9125 -2.5015 7 6 2.4057 -0.7331 -3.5522 8 7 2.9174 -1.9415 -3.4515 9 14 2.3015 0.1011 -5.2203 10 1 3.5438 0.8774 -5.4639 11 1 2.1452 -0.9280 -6.2795 12 1 1.1328 1.0170 -5.2436 13 6 2.0401 -0.7212 1.2493 14 1 1.8468 -1.7901 1.1586 15 6 1.3264 -0.1736 2.4893 16 6 1.9386 -0.8008 3.7439 17 6 3.4194 -0.4250 3.8335 18 6 4.1579 -0.9803 2.6062 19 7 3.4840 -0.4924 1.3951 20 6 4.1784 0.1480 0.4337 21 8 3.6110 0.5391 -0.5673 22 6 5.6320 0.3748 0.5971 23 6 6.4130 -0.5632 1.2738 24 6 7.7672 -0.3543 1.4216 25 6 8.3558 0.8003 0.9039 26 6 9.8094 1.0271 1.0672 27 7 10.5645 0.1188 1.7163 28 8 10.3221 2.0324 0.6160 29 6 7.5739 1.7408 0.2317 30 6 6.2205 1.5296 0.0797 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 2.3955 -1.5812 -1.1219 35 1 3.2407 -2.3989 -4.2435 36 1 1.4450 0.9092 2.5289 37 1 0.2664 -0.4224 2.4385 38 1 1.4161 -0.4315 4.6264 39 1 1.8417 -1.8852 3.6921 40 1 3.5183 0.6602 3.8604 41 1 3.8490 -0.8521 4.7397 42 1 4.1338 -2.0699 2.6239 43 1 5.1919 -0.6355 2.6131 44 1 5.9566 -1.4544 1.6787 45 1 8.3722 -1.0823 1.9418 46 1 10.1553 -0.6834 2.0768 47 1 11.5170 0.2676 1.8237 48 1 8.0295 2.6341 -0.1693 49 1 5.6155 2.2576 -0.4401 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752157207.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:06 Heat of formation + Delta-G solvation = -2.873761 kcal Electronic energy + Delta-G solvation = -31686.399070 eV Core-core repulsion = 27614.739153 eV Total energy + Delta-G solvation = -4071.659917 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.89601 -40.90679 -39.22517 -38.05640 -36.84438 -34.93311 -34.37519 -33.73766 -32.12073 -31.94970 -31.34934 -29.35360 -27.04405 -26.02945 -25.13266 -24.44501 -23.51872 -22.29711 -21.66200 -21.23067 -20.53805 -19.18901 -18.86992 -18.01651 -17.74784 -16.94354 -16.75792 -16.26971 -16.04430 -15.88877 -15.81615 -15.56532 -15.38144 -15.31783 -15.11343 -14.62169 -14.49348 -14.26799 -14.19132 -13.86464 -13.55388 -13.43621 -13.37591 -13.29748 -12.98041 -12.81549 -12.54738 -12.41245 -12.21357 -12.06834 -11.83328 -11.65591 -11.57897 -11.35880 -11.26326 -11.12101 -10.79769 -10.75729 -10.13592 -10.00733 -9.70852 -9.36718 -8.54900 -7.77517 -4.94024 -0.49440 0.27407 1.41695 1.45197 1.51097 1.54248 2.14291 2.24768 2.46122 2.65064 2.83266 3.53126 3.56715 3.71331 3.82275 3.86177 3.88231 4.01063 4.07776 4.15768 4.25257 4.35024 4.35801 4.40150 4.43592 4.60546 4.66284 4.75797 4.79763 4.88924 4.89591 4.96441 5.07477 5.08302 5.11231 5.16254 5.22048 5.22493 5.30569 5.33042 5.44731 5.50381 5.58666 5.63621 5.69517 5.85576 5.94925 6.38437 6.44653 6.67459 7.25287 7.49704 7.59065 8.29782 8.52446 9.47829 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008598 B = 0.004352 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3255.693223 B = 6432.264200 C = 9004.513889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.178 3.822 3 H 0.034 0.966 4 N -0.695 5.695 5 C -0.166 4.166 6 H 0.053 0.947 7 C -0.089 4.089 8 N -0.978 5.978 9 Si 0.951 3.049 10 H -0.303 1.303 11 H -0.297 1.297 12 H -0.275 1.275 13 C 0.152 3.848 14 H 0.061 0.939 15 C -0.121 4.121 16 C -0.115 4.115 17 C -0.128 4.128 18 C 0.072 3.928 19 N -0.603 5.603 20 C 0.504 3.496 21 O -0.490 6.490 22 C -0.099 4.099 23 C -0.109 4.109 24 C -0.071 4.071 25 C -0.135 4.135 26 C 0.564 3.436 27 N -0.823 5.823 28 O -0.588 6.588 29 C -0.073 4.073 30 C -0.095 4.095 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.028 0.972 34 H 0.364 0.636 35 H 0.240 0.760 36 H 0.057 0.943 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.102 0.898 42 H 0.083 0.917 43 H 0.118 0.882 44 H 0.172 0.828 45 H 0.182 0.818 46 H 0.419 0.581 47 H 0.415 0.585 48 H 0.132 0.868 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.025 -1.352 24.530 26.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.070 3.930 3 H 0.052 0.948 4 N -0.334 5.334 5 C -0.299 4.299 6 H 0.071 0.929 7 C -0.279 4.279 8 N -0.633 5.633 9 Si 0.784 3.216 10 H -0.231 1.231 11 H -0.224 1.224 12 H -0.201 1.201 13 C 0.048 3.952 14 H 0.079 0.921 15 C -0.160 4.160 16 C -0.153 4.153 17 C -0.166 4.166 18 C -0.048 4.048 19 N -0.339 5.339 20 C 0.290 3.710 21 O -0.362 6.362 22 C -0.102 4.102 23 C -0.127 4.127 24 C -0.089 4.089 25 C -0.138 4.138 26 C 0.350 3.650 27 N -0.388 5.388 28 O -0.469 6.469 29 C -0.092 4.092 30 C -0.114 4.114 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.047 0.953 34 H 0.195 0.805 35 H 0.049 0.951 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.120 0.880 42 H 0.101 0.899 43 H 0.135 0.865 44 H 0.189 0.811 45 H 0.200 0.800 46 H 0.252 0.748 47 H 0.248 0.752 48 H 0.150 0.850 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.813 -0.316 23.529 25.128 hybrid contribution 0.158 0.079 -1.710 1.719 sum 8.972 -0.237 21.820 23.593 Atomic orbital electron populations 1.22433 0.98089 1.00880 1.00534 1.20535 0.91383 0.95689 0.85403 0.94784 1.42327 1.71945 1.16630 1.02456 1.19184 1.27683 0.97229 0.85817 0.92933 1.25127 1.04662 0.97919 1.00149 1.69768 1.51366 1.14418 1.27721 0.85411 0.77166 0.77184 0.81873 1.23135 1.22394 1.20062 1.21397 0.79692 0.98763 0.95303 0.92113 1.21970 1.00176 1.00378 0.93470 1.21529 0.95814 1.01063 0.96863 1.21991 0.95677 1.01106 0.97868 1.22930 0.98928 0.99791 0.83196 1.47850 1.08206 1.57833 1.19999 1.18936 0.87223 0.81226 0.83576 1.91276 1.68838 1.47768 1.28338 1.20422 0.93967 0.96602 0.99248 1.21913 0.94006 0.99626 0.97122 1.21626 0.94347 0.95614 0.97293 1.20089 0.93162 0.97461 1.03096 1.18353 0.86785 0.82659 0.77164 1.43515 1.12959 1.24302 1.58039 1.90799 1.74814 1.30209 1.51076 1.21188 0.92409 0.99335 0.96303 1.21110 0.94952 0.97202 0.98106 0.93533 0.90626 0.95317 0.80490 0.95087 0.92383 0.89625 0.90021 0.91127 0.92523 0.87952 0.89894 0.86455 0.81074 0.80049 0.74765 0.75233 0.84982 0.86611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.86 8.69 71.98 0.63 -5.23 16 2 C 0.18 7.41 1.82 44.99 0.08 7.49 16 3 H 0.03 1.62 6.34 -2.38 -0.02 1.60 16 4 N -0.70 -36.88 3.22 -322.93 -1.04 -37.91 16 5 C -0.17 -9.98 8.24 84.03 0.69 -9.28 16 6 H 0.05 3.20 7.83 -2.91 -0.02 3.18 16 7 C -0.09 -5.53 5.50 84.86 0.47 -5.06 16 8 N -0.98 -63.80 13.06 21.65 0.28 -63.52 16 9 Si 0.95 51.15 29.55 68.60 2.03 53.18 16 10 H -0.30 -16.47 7.11 99.48 0.71 -15.77 16 11 H -0.30 -15.85 7.11 99.48 0.71 -15.14 16 12 H -0.28 -14.09 7.11 99.48 0.71 -13.38 16 13 C 0.15 4.76 2.59 44.97 0.12 4.88 16 14 H 0.06 1.99 8.13 -2.39 -0.02 1.97 16 15 C -0.12 -2.71 4.48 30.67 0.14 -2.58 16 16 C -0.12 -1.77 5.88 30.62 0.18 -1.59 16 17 C -0.13 -1.81 6.10 30.82 0.19 -1.62 16 18 C 0.07 1.31 4.89 86.51 0.42 1.73 16 19 N -0.60 -17.86 2.97 -797.37 -2.37 -20.22 16 20 C 0.50 19.08 7.19 86.84 0.62 19.70 16 21 O -0.49 -24.33 9.67 -3.83 -0.04 -24.37 16 22 C -0.10 -3.07 5.49 -20.04 -0.11 -3.18 16 23 C -0.11 -2.27 7.39 22.49 0.17 -2.11 16 24 C -0.07 -1.11 9.53 22.49 0.21 -0.90 16 25 C -0.13 -2.99 5.88 -20.04 -0.12 -3.10 16 26 C 0.56 12.12 8.05 86.84 0.70 12.82 16 27 N -0.82 -8.34 8.82 -175.47 -1.55 -9.89 16 28 O -0.59 -18.19 17.17 -3.80 -0.07 -18.26 16 29 C -0.07 -2.06 9.58 22.49 0.22 -1.85 16 30 C -0.09 -3.05 9.59 22.49 0.22 -2.84 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.08 2.17 6.45 -2.39 -0.02 2.16 16 33 H 0.03 1.17 8.01 -2.39 -0.02 1.15 16 34 H 0.36 20.82 7.70 -92.71 -0.71 20.10 16 35 H 0.24 15.39 8.31 -92.71 -0.77 14.62 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.09 1.76 6.70 -2.39 -0.02 1.74 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.08 1.26 8.12 -2.39 -0.02 1.24 16 43 H 0.12 1.80 3.72 -2.42 -0.01 1.79 16 44 H 0.17 2.70 5.45 -2.91 -0.02 2.69 16 45 H 0.18 0.85 6.39 -2.91 -0.02 0.83 16 46 H 0.42 1.18 6.85 -92.70 -0.64 0.55 16 47 H 0.41 3.14 8.93 -92.71 -0.83 2.31 16 48 H 0.13 3.78 7.64 -2.91 -0.02 3.75 16 49 H 0.12 4.14 7.97 -2.91 -0.02 4.11 16 Total: -1.00 -88.37 380.05 0.91 -87.45 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: -1.16 Total: 26.24 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 4.82 Total: 7.29 kcal Atomic # 7 Polarization: -126.87 SS G_CDS: -4.67 Total: -131.54 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -0.10 Total: -42.63 kcal Atomic # 14 Polarization: 51.15 SS G_CDS: 2.03 Total: 53.18 kcal Total: -88.37 0.91 -87.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752157207.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.580 kcal (2) G-P(sol) polarization free energy of solvation -88.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds