Wall clock time and date at job start Wed Apr 1 2020 03:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47168 * 2 1 4 4 C 1.50695 * 109.47448 * 120.00595 * 2 1 3 5 5 O 1.21274 * 120.00413 * 120.26898 * 4 2 1 6 6 N 1.34784 * 119.99635 * 299.99856 * 4 2 1 7 7 C 1.47426 * 125.64857 * 0.02588 * 6 4 2 8 8 C 1.54912 * 104.82994 * 204.09393 * 7 6 4 9 9 C 1.55160 * 101.57860 * 322.98724 * 8 7 6 10 10 H 1.09000 * 110.72397 * 277.13785 * 9 8 7 11 11 N 1.46900 * 110.71757 * 154.04660 * 9 8 7 12 12 C 1.46895 * 111.00193 * 86.45533 * 11 9 8 13 13 C 1.50706 * 109.47237 * 179.97438 * 12 11 9 14 14 O 1.21290 * 120.00147 * 359.97438 * 13 12 11 15 15 N 1.34774 * 119.99932 * 179.97438 * 13 12 11 16 16 C 1.37099 * 120.00057 * 180.02562 * 15 13 12 17 17 H 1.08003 * 119.99755 * 0.02562 * 16 15 13 18 18 C 1.38947 * 120.00082 * 179.97438 * 16 15 13 19 19 N 1.31412 * 120.00013 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99870 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46774 * 90.00357 * 20 18 16 22 22 H 1.48503 * 109.46956 * 210.00139 * 20 18 16 23 23 H 1.48498 * 109.47048 * 329.99970 * 20 18 16 24 24 C 1.47022 * 125.64460 * 179.71653 * 6 4 2 25 25 C 1.50707 * 109.46691 * 240.00394 * 2 1 3 26 26 C 1.38234 * 119.99846 * 299.72505 * 25 2 1 27 27 C 1.38232 * 119.99498 * 179.79165 * 26 25 2 28 28 C 1.38238 * 120.00384 * 0.44099 * 27 26 25 29 29 C 1.38238 * 119.99543 * 359.81222 * 28 27 26 30 30 C 1.38233 * 119.99598 * 120.00457 * 25 2 1 31 31 H 1.09008 * 109.47290 * 299.99459 * 1 2 3 32 32 H 1.09005 * 109.47504 * 59.99649 * 1 2 3 33 33 H 1.08997 * 109.47563 * 179.97438 * 1 2 3 34 34 H 1.08998 * 110.36404 * 322.92704 * 7 6 4 35 35 H 1.08995 * 110.36566 * 85.25087 * 7 6 4 36 36 H 1.08995 * 111.00742 * 81.05954 * 8 7 6 37 37 H 1.09002 * 111.00226 * 204.88005 * 8 7 6 38 38 H 1.00904 * 111.00237 * 322.49497 * 11 9 8 39 39 H 1.09004 * 109.46969 * 299.99574 * 12 11 9 40 40 H 1.08993 * 109.47275 * 60.00017 * 12 11 9 41 41 H 0.97002 * 120.00105 * 359.97438 * 15 13 12 42 42 H 0.97005 * 119.99898 * 179.97438 * 19 18 16 43 43 H 1.09007 * 109.88188 * 298.39260 * 24 6 4 44 44 H 1.09002 * 109.88437 * 59.55854 * 24 6 4 45 45 H 1.07995 * 120.00133 * 359.97438 * 26 25 2 46 46 H 1.08003 * 119.99992 * 180.27312 * 27 26 25 47 47 H 1.07996 * 120.00031 * 179.83415 * 28 27 26 48 48 H 1.07996 * 119.99433 * 179.97438 * 29 28 27 49 49 H 1.08000 * 120.00284 * 359.97088 * 30 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 8 2.7336 -1.6936 1.1190 6 7 1.7068 -0.2501 2.4545 7 6 0.8705 0.9316 2.7337 8 6 1.2944 1.3914 4.1510 9 6 1.5388 0.0326 4.8591 10 1 0.6011 -0.3862 5.2244 11 7 2.5008 0.1853 5.9588 12 6 1.8235 0.5875 7.1987 13 6 2.8400 0.7333 8.3018 14 8 4.0131 0.5223 8.0772 15 7 2.4454 1.0980 9.5378 16 6 3.3701 1.2312 10.5411 17 1 4.4148 1.0441 10.3410 18 6 2.9634 1.6077 11.8153 19 7 1.6923 1.8358 12.0587 20 14 4.2234 1.7884 13.1826 21 1 4.7344 3.1826 13.2036 22 1 3.5866 1.4749 14.4870 23 1 5.3505 0.8515 12.9441 24 6 2.1215 -0.8468 3.7326 25 6 2.0322 -0.7104 -1.2306 26 6 1.7029 -2.0354 -1.4465 27 6 2.1600 -2.6857 -2.5775 28 6 2.9540 -2.0136 -3.4879 29 6 3.2876 -0.6900 -3.2692 30 6 2.8270 -0.0385 -2.1404 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.0689 1.7174 2.0049 35 1 -0.1851 0.6604 2.7227 36 1 2.2096 1.9821 4.1127 37 1 0.4929 1.9474 4.6373 38 1 3.2279 0.8409 5.7148 39 1 1.3165 1.5398 7.0432 40 1 1.0929 -0.1721 7.4765 41 1 1.5072 1.2671 9.7173 42 1 1.4084 2.0983 12.9483 43 1 1.7309 -1.8614 3.8120 44 1 3.2093 -0.8598 3.8000 45 1 1.0860 -2.5617 -0.7332 46 1 1.8991 -3.7197 -2.7484 47 1 3.3133 -2.5225 -4.3701 48 1 3.9083 -0.1651 -3.9803 49 1 3.0876 0.9956 -1.9696 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752600042.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:14 Heat of formation + Delta-G solvation = -39.667723 kcal Electronic energy + Delta-G solvation = -29074.046150 eV Core-core repulsion = 25000.790727 eV Total energy + Delta-G solvation = -4073.255423 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.77722 -39.36453 -38.39163 -37.60209 -34.94934 -34.38143 -33.78497 -31.28540 -31.14119 -30.72129 -29.85348 -28.74009 -26.30052 -25.22186 -23.95021 -23.27226 -22.78408 -21.77257 -20.84145 -19.42158 -19.30295 -17.94503 -17.35226 -17.15848 -16.46524 -16.07294 -15.93241 -15.47398 -15.27402 -14.78807 -14.57191 -14.54075 -14.11407 -13.89334 -13.78645 -13.73473 -13.57850 -13.39378 -13.10570 -12.83557 -12.64914 -12.53981 -12.39243 -12.36085 -11.98952 -11.93563 -11.63949 -11.49068 -11.40248 -11.22338 -11.20065 -11.05943 -10.97685 -10.40721 -10.23899 -9.93129 -9.53352 -9.11071 -8.97199 -8.83262 -8.52040 -8.12663 -7.98708 -6.44124 -3.84953 1.08703 1.20585 2.44872 2.71559 3.16492 3.25512 3.31725 3.57154 3.87209 3.98853 4.14221 4.21500 4.21999 4.35837 4.55881 4.66789 4.71187 4.79133 4.82034 4.87090 4.90536 5.03497 5.07361 5.16077 5.20652 5.21486 5.25255 5.25334 5.35088 5.44341 5.55131 5.68179 5.69993 5.70530 5.73718 5.81347 5.83788 5.90575 5.93288 6.07803 6.22019 6.23383 6.29045 6.36099 6.76195 7.11689 7.29813 7.53215 7.54174 7.98376 8.03747 8.58425 9.15591 9.51328 10.02658 10.73492 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.032748 B = 0.001596 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.817626 B =17536.826473 C =17878.038395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.067 4.067 3 H 0.103 0.897 4 C 0.532 3.468 5 O -0.528 6.528 6 N -0.618 5.618 7 C 0.101 3.899 8 C -0.170 4.170 9 C 0.081 3.919 10 H 0.095 0.905 11 N -0.658 5.658 12 C 0.053 3.947 13 C 0.439 3.561 14 O -0.583 6.583 15 N -0.563 5.563 16 C -0.300 4.300 17 H 0.103 0.897 18 C 0.023 3.977 19 N -0.902 5.902 20 Si 0.930 3.070 21 H -0.278 1.278 22 H -0.283 1.283 23 H -0.269 1.269 24 C 0.116 3.884 25 C -0.068 4.068 26 C -0.083 4.083 27 C -0.122 4.122 28 C -0.120 4.120 29 C -0.124 4.124 30 C -0.112 4.112 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.354 0.646 39 H 0.046 0.954 40 H 0.087 0.913 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.118 0.882 46 H 0.121 0.879 47 H 0.120 0.880 48 H 0.121 0.879 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.169 -0.778 -28.325 29.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.088 4.088 3 H 0.121 0.879 4 C 0.320 3.680 5 O -0.403 6.403 6 N -0.353 5.353 7 C -0.022 4.022 8 C -0.210 4.210 9 C -0.031 4.031 10 H 0.113 0.887 11 N -0.290 5.290 12 C -0.080 4.080 13 C 0.225 3.775 14 O -0.467 6.467 15 N -0.199 5.199 16 C -0.430 4.430 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.757 3.243 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.007 4.007 25 C -0.068 4.068 26 C -0.101 4.101 27 C -0.140 4.140 28 C -0.138 4.138 29 C -0.142 4.142 30 C -0.130 4.130 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.174 0.826 39 H 0.064 0.936 40 H 0.105 0.895 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.136 0.864 46 H 0.139 0.861 47 H 0.138 0.862 48 H 0.139 0.861 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.044 -2.112 -28.234 29.176 hybrid contribution -0.253 1.241 0.773 1.484 sum -7.297 -0.870 -27.461 28.428 Atomic orbital electron populations 1.21946 0.91976 1.03293 1.03307 1.20237 0.97830 1.00112 0.90641 0.87910 1.20130 0.80318 0.84564 0.83014 1.90747 1.37310 1.26401 1.85872 1.48469 1.51663 1.29617 1.05549 1.22395 0.94948 0.87653 0.97241 1.23635 1.03087 0.99008 0.95273 1.22605 0.96032 0.93698 0.90792 0.88720 1.59943 1.12193 1.55429 1.01392 1.21684 0.96505 0.99603 0.90204 1.19789 0.89417 0.84416 0.83923 1.90537 1.18397 1.55341 1.82402 1.41854 1.10559 1.59800 1.07723 1.19713 0.91829 1.43333 0.88089 0.87900 1.25259 0.96843 0.97163 0.98614 1.69610 1.14580 1.47007 1.23088 0.85855 0.80100 0.78723 0.79603 1.20425 1.20905 1.19387 1.21901 1.01229 0.96697 0.80886 1.19294 0.98374 0.94482 0.94656 1.20904 0.99039 0.93747 0.96450 1.21126 0.98433 0.99865 0.94617 1.21148 0.98430 0.94850 0.99419 1.21073 1.00367 0.95054 0.97692 1.20999 0.97575 0.99849 0.94582 0.91028 0.91152 0.91824 0.90502 0.90788 0.90124 0.89481 0.82574 0.93640 0.89453 0.77461 0.91865 0.90937 0.90249 0.86381 0.86134 0.86235 0.86114 0.86190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 8.82 37.15 0.33 -0.58 16 2 C -0.07 -0.56 2.25 -92.93 -0.21 -0.77 16 3 H 0.10 0.70 7.58 -51.93 -0.39 0.30 16 4 C 0.53 6.26 7.08 -10.98 -0.08 6.19 16 5 O -0.53 -8.41 15.42 5.56 0.09 -8.32 16 6 N -0.62 -6.43 3.32 -170.51 -0.57 -7.00 16 7 C 0.10 0.72 5.13 -2.53 -0.01 0.71 16 8 C -0.17 -1.44 6.63 -24.58 -0.16 -1.60 16 9 C 0.08 0.89 3.22 -65.87 -0.21 0.68 16 10 H 0.09 0.96 7.89 -51.93 -0.41 0.55 16 11 N -0.66 -9.95 5.92 -106.05 -0.63 -10.58 16 12 C 0.05 0.86 6.02 -4.98 -0.03 0.83 16 13 C 0.44 10.10 7.82 -10.98 -0.09 10.02 16 14 O -0.58 -15.67 15.78 5.55 0.09 -15.58 16 15 N -0.56 -13.97 5.29 -10.96 -0.06 -14.03 16 16 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 17 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 18 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 19 N -0.90 -24.18 13.05 55.50 0.72 -23.46 16 20 Si 0.93 20.90 29.55 -169.99 -5.02 15.88 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 24 C 0.12 1.40 6.64 -3.06 -0.02 1.37 16 25 C -0.07 -0.66 4.40 -104.62 -0.46 -1.12 16 26 C -0.08 -0.85 7.93 -39.58 -0.31 -1.17 16 27 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 28 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 29 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 30 C -0.11 -0.99 9.67 -39.58 -0.38 -1.38 16 31 H 0.07 0.36 4.99 -51.92 -0.26 0.10 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.43 7.40 -51.93 -0.38 0.05 16 34 H 0.08 0.43 7.36 -51.93 -0.38 0.04 16 35 H 0.07 0.42 7.07 -51.93 -0.37 0.05 16 36 H 0.08 0.74 7.82 -51.93 -0.41 0.34 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.35 5.60 8.01 -39.29 -0.31 5.29 16 39 H 0.05 0.65 8.13 -51.93 -0.42 0.23 16 40 H 0.09 1.32 8.08 -51.93 -0.42 0.90 16 41 H 0.39 9.24 7.90 -40.82 -0.32 8.92 16 42 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 43 H 0.07 0.91 8.14 -51.92 -0.42 0.48 16 44 H 0.08 1.13 8.03 -51.93 -0.42 0.72 16 45 H 0.12 1.21 7.52 -52.49 -0.39 0.81 16 46 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 47 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 48 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 49 H 0.12 0.83 7.95 -52.49 -0.42 0.41 16 LS Contribution 400.40 15.07 6.03 6.03 Total: -1.00 -34.06 400.40 -9.78 -43.84 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -7.36 Total: 12.33 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -3.07 Total: 0.89 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.53 Total: -55.06 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: 0.17 Total: -23.90 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.06 -9.78 -43.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752600042.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.168 kcal (2) G-P(sol) polarization free energy of solvation -34.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds