Wall clock time and date at job start Wed Apr 1 2020 03:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47168 * 2 1 4 4 C 1.50695 * 109.47448 * 120.00595 * 2 1 3 5 5 O 1.21274 * 120.00413 * 120.26898 * 4 2 1 6 6 N 1.34784 * 119.99635 * 299.99856 * 4 2 1 7 7 C 1.47426 * 125.64857 * 0.02588 * 6 4 2 8 8 C 1.54912 * 104.82994 * 204.09393 * 7 6 4 9 9 C 1.55160 * 101.57860 * 322.98724 * 8 7 6 10 10 H 1.09000 * 110.72397 * 277.13785 * 9 8 7 11 11 N 1.46900 * 110.71757 * 154.04660 * 9 8 7 12 12 C 1.46895 * 111.00193 * 86.45533 * 11 9 8 13 13 C 1.50706 * 109.47237 * 179.97438 * 12 11 9 14 14 O 1.21290 * 120.00147 * 359.97438 * 13 12 11 15 15 N 1.34774 * 119.99932 * 179.97438 * 13 12 11 16 16 C 1.37099 * 120.00057 * 180.02562 * 15 13 12 17 17 H 1.08003 * 119.99755 * 0.02562 * 16 15 13 18 18 C 1.38947 * 120.00082 * 179.97438 * 16 15 13 19 19 N 1.31412 * 120.00013 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99870 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46774 * 90.00357 * 20 18 16 22 22 H 1.48503 * 109.46956 * 210.00139 * 20 18 16 23 23 H 1.48498 * 109.47048 * 329.99970 * 20 18 16 24 24 C 1.47022 * 125.64460 * 179.71653 * 6 4 2 25 25 C 1.50707 * 109.46691 * 240.00394 * 2 1 3 26 26 C 1.38234 * 119.99846 * 299.72505 * 25 2 1 27 27 C 1.38232 * 119.99498 * 179.79165 * 26 25 2 28 28 C 1.38238 * 120.00384 * 0.44099 * 27 26 25 29 29 C 1.38238 * 119.99543 * 359.81222 * 28 27 26 30 30 C 1.38233 * 119.99598 * 120.00457 * 25 2 1 31 31 H 1.09008 * 109.47290 * 299.99459 * 1 2 3 32 32 H 1.09005 * 109.47504 * 59.99649 * 1 2 3 33 33 H 1.08997 * 109.47563 * 179.97438 * 1 2 3 34 34 H 1.08998 * 110.36404 * 322.92704 * 7 6 4 35 35 H 1.08995 * 110.36566 * 85.25087 * 7 6 4 36 36 H 1.08995 * 111.00742 * 81.05954 * 8 7 6 37 37 H 1.09002 * 111.00226 * 204.88005 * 8 7 6 38 38 H 1.00904 * 111.00237 * 322.49497 * 11 9 8 39 39 H 1.09004 * 109.46969 * 299.99574 * 12 11 9 40 40 H 1.08993 * 109.47275 * 60.00017 * 12 11 9 41 41 H 0.97002 * 120.00105 * 359.97438 * 15 13 12 42 42 H 0.97005 * 119.99898 * 179.97438 * 19 18 16 43 43 H 1.09007 * 109.88188 * 298.39260 * 24 6 4 44 44 H 1.09002 * 109.88437 * 59.55854 * 24 6 4 45 45 H 1.07995 * 120.00133 * 359.97438 * 26 25 2 46 46 H 1.08003 * 119.99992 * 180.27312 * 27 26 25 47 47 H 1.07996 * 120.00031 * 179.83415 * 28 27 26 48 48 H 1.07996 * 119.99433 * 179.97438 * 29 28 27 49 49 H 1.08000 * 120.00284 * 359.97088 * 30 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 8 2.7336 -1.6936 1.1190 6 7 1.7068 -0.2501 2.4545 7 6 0.8705 0.9316 2.7337 8 6 1.2944 1.3914 4.1510 9 6 1.5388 0.0326 4.8591 10 1 0.6011 -0.3862 5.2244 11 7 2.5008 0.1853 5.9588 12 6 1.8235 0.5875 7.1987 13 6 2.8400 0.7333 8.3018 14 8 4.0131 0.5223 8.0772 15 7 2.4454 1.0980 9.5378 16 6 3.3701 1.2312 10.5411 17 1 4.4148 1.0441 10.3410 18 6 2.9634 1.6077 11.8153 19 7 1.6923 1.8358 12.0587 20 14 4.2234 1.7884 13.1826 21 1 4.7344 3.1826 13.2036 22 1 3.5866 1.4749 14.4870 23 1 5.3505 0.8515 12.9441 24 6 2.1215 -0.8468 3.7326 25 6 2.0322 -0.7104 -1.2306 26 6 1.7029 -2.0354 -1.4465 27 6 2.1600 -2.6857 -2.5775 28 6 2.9540 -2.0136 -3.4879 29 6 3.2876 -0.6900 -3.2692 30 6 2.8270 -0.0385 -2.1404 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.0689 1.7174 2.0049 35 1 -0.1851 0.6604 2.7227 36 1 2.2096 1.9821 4.1127 37 1 0.4929 1.9474 4.6373 38 1 3.2279 0.8409 5.7148 39 1 1.3165 1.5398 7.0432 40 1 1.0929 -0.1721 7.4765 41 1 1.5072 1.2671 9.7173 42 1 1.4084 2.0983 12.9483 43 1 1.7309 -1.8614 3.8120 44 1 3.2093 -0.8598 3.8000 45 1 1.0860 -2.5617 -0.7332 46 1 1.8991 -3.7197 -2.7484 47 1 3.3133 -2.5225 -4.3701 48 1 3.9083 -0.1651 -3.9803 49 1 3.0876 0.9956 -1.9696 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752600042.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:13 Heat of formation + Delta-G solvation = -63.176587 kcal Electronic energy + Delta-G solvation = -29075.065571 eV Core-core repulsion = 25000.790727 eV Total energy + Delta-G solvation = -4074.274844 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.58772 -40.30926 -39.85902 -38.66899 -36.22088 -35.67412 -35.04383 -33.26391 -31.78506 -31.67167 -30.53770 -29.64470 -27.78519 -26.15386 -25.39363 -24.03950 -23.43544 -22.48181 -21.73279 -21.09134 -20.17990 -19.91890 -18.21735 -17.92038 -17.61675 -17.29340 -16.84213 -16.66334 -16.32641 -16.19765 -15.82673 -15.46928 -15.38998 -15.17485 -14.87647 -14.52513 -14.30676 -14.16535 -14.12431 -13.82623 -13.63959 -13.58814 -13.47337 -13.30556 -13.06523 -13.02335 -12.88970 -12.58445 -12.52298 -12.41997 -12.29040 -12.12199 -11.86941 -11.84058 -11.70345 -11.50478 -10.83564 -10.35576 -10.00767 -9.78512 -9.71024 -9.62074 -9.30640 -8.46502 -5.94895 0.42441 0.53735 1.38056 1.42308 1.54590 1.58029 1.89161 2.06361 2.29868 2.88480 2.93329 3.21062 3.38619 3.48262 3.56424 3.68031 3.87138 3.99847 4.08098 4.12531 4.22817 4.25598 4.27478 4.30737 4.32804 4.37176 4.51678 4.60605 4.62653 4.65539 4.68069 4.80980 4.81544 4.88507 4.88771 5.02441 5.09469 5.12504 5.16855 5.24713 5.26121 5.41571 5.57715 5.63789 5.69145 5.89655 6.10748 6.12875 6.33980 6.48622 6.61066 7.11186 7.13552 7.57285 8.13212 8.70628 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.032748 B = 0.001596 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.817626 B =17536.826473 C =17878.038395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.059 4.059 3 H 0.125 0.875 4 C 0.525 3.475 5 O -0.581 6.581 6 N -0.615 5.615 7 C 0.099 3.901 8 C -0.162 4.162 9 C 0.085 3.915 10 H 0.112 0.888 11 N -0.679 5.679 12 C 0.070 3.930 13 C 0.435 3.565 14 O -0.627 6.627 15 N -0.571 5.571 16 C -0.336 4.336 17 H 0.076 0.924 18 C -0.010 4.010 19 N -0.918 5.918 20 Si 0.991 3.009 21 H -0.270 1.270 22 H -0.270 1.270 23 H -0.276 1.276 24 C 0.117 3.883 25 C -0.083 4.083 26 C -0.104 4.104 27 C -0.137 4.137 28 C -0.128 4.128 29 C -0.130 4.130 30 C -0.123 4.123 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.051 0.949 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.346 0.654 39 H 0.078 0.922 40 H 0.107 0.893 41 H 0.398 0.602 42 H 0.278 0.722 43 H 0.061 0.939 44 H 0.047 0.953 45 H 0.107 0.893 46 H 0.131 0.869 47 H 0.141 0.859 48 H 0.144 0.856 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.903 1.027 -29.283 30.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.080 4.080 3 H 0.143 0.857 4 C 0.315 3.685 5 O -0.461 6.461 6 N -0.349 5.349 7 C -0.022 4.022 8 C -0.201 4.201 9 C -0.025 4.025 10 H 0.130 0.870 11 N -0.310 5.310 12 C -0.062 4.062 13 C 0.223 3.777 14 O -0.514 6.514 15 N -0.209 5.209 16 C -0.465 4.465 17 H 0.094 0.906 18 C -0.210 4.210 19 N -0.559 5.559 20 Si 0.815 3.185 21 H -0.195 1.195 22 H -0.195 1.195 23 H -0.201 1.201 24 C -0.007 4.007 25 C -0.083 4.083 26 C -0.122 4.122 27 C -0.155 4.155 28 C -0.146 4.146 29 C -0.148 4.148 30 C -0.140 4.140 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.090 0.910 37 H 0.129 0.871 38 H 0.166 0.834 39 H 0.096 0.904 40 H 0.125 0.875 41 H 0.232 0.768 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.125 0.875 46 H 0.149 0.851 47 H 0.158 0.842 48 H 0.161 0.839 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.843 -0.276 -29.197 30.508 hybrid contribution 0.318 0.630 1.013 1.235 sum -8.525 0.354 -28.184 29.447 Atomic orbital electron populations 1.21947 0.90058 1.03077 1.04891 1.20284 0.99274 1.00320 0.88139 0.85679 1.20840 0.79472 0.84060 0.84129 1.90718 1.39794 1.28865 1.86686 1.48542 1.51530 1.30278 1.04557 1.22691 0.95611 0.86884 0.97051 1.23588 1.03592 0.97225 0.95734 1.22603 0.95320 0.95359 0.89266 0.86998 1.59869 1.13331 1.55577 1.02266 1.21526 0.94496 1.01930 0.88221 1.20979 0.90130 0.82042 0.84588 1.90507 1.20973 1.56682 1.83242 1.41907 1.10368 1.60510 1.08096 1.19649 0.91453 1.45598 0.89829 0.90556 1.25985 0.98754 0.96217 1.00068 1.69660 1.15574 1.46728 1.23893 0.84962 0.77707 0.78717 0.77152 1.19549 1.19502 1.20099 1.21736 0.99383 0.96923 0.82632 1.19537 0.98814 0.94520 0.95455 1.20989 0.99883 0.94481 0.96875 1.21377 0.98782 1.00638 0.94697 1.21464 0.98019 0.95218 0.99907 1.21437 1.00208 0.95182 0.97978 1.21318 0.97212 1.00918 0.94592 0.89269 0.89622 0.93006 0.87957 0.88210 0.90988 0.87148 0.83408 0.90433 0.87505 0.76811 0.91280 0.92021 0.93405 0.87499 0.85073 0.84160 0.83867 0.84215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.82 71.98 0.63 -0.78 16 2 C -0.06 -0.91 2.25 -12.29 -0.03 -0.93 16 3 H 0.13 1.33 7.58 -2.39 -0.02 1.31 16 4 C 0.53 12.26 7.08 87.65 0.62 12.88 16 5 O -0.58 -19.42 15.42 -3.01 -0.05 -19.47 16 6 N -0.62 -12.13 3.32 -811.76 -2.70 -14.83 16 7 C 0.10 1.07 5.13 86.86 0.45 1.52 16 8 C -0.16 -2.23 6.63 31.99 0.21 -2.01 16 9 C 0.09 1.73 3.22 46.11 0.15 1.88 16 10 H 0.11 1.94 7.89 -2.39 -0.02 1.92 16 11 N -0.68 -20.08 5.92 -489.43 -2.90 -22.98 16 12 C 0.07 2.19 6.02 85.56 0.52 2.71 16 13 C 0.43 20.15 7.82 87.66 0.69 20.84 16 14 O -0.63 -34.75 15.78 -3.06 -0.05 -34.80 16 15 N -0.57 -28.64 5.29 -306.98 -1.62 -30.26 16 16 C -0.34 -18.94 9.68 84.04 0.81 -18.12 16 17 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 18 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 19 N -0.92 -48.60 13.05 21.66 0.28 -48.32 16 20 Si 0.99 42.68 29.55 68.60 2.03 44.71 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 22 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 23 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 24 C 0.12 2.85 6.64 86.73 0.58 3.42 16 25 C -0.08 -1.57 4.40 -19.86 -0.09 -1.66 16 26 C -0.10 -2.20 7.93 22.27 0.18 -2.02 16 27 C -0.14 -2.55 10.05 22.27 0.22 -2.32 16 28 C -0.13 -2.05 10.05 22.27 0.22 -1.82 16 29 C -0.13 -1.98 10.05 22.27 0.22 -1.76 16 30 C -0.12 -2.01 9.67 22.27 0.22 -1.79 16 31 H 0.09 0.55 4.99 -2.38 -0.01 0.53 16 32 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.05 0.65 7.40 -2.39 -0.02 0.63 16 34 H 0.10 0.67 7.36 -2.39 -0.02 0.65 16 35 H 0.10 0.66 7.07 -2.39 -0.02 0.64 16 36 H 0.07 1.16 7.82 -2.39 -0.02 1.14 16 37 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.35 11.03 8.01 -89.69 -0.72 10.31 16 39 H 0.08 1.96 8.13 -2.39 -0.02 1.94 16 40 H 0.11 2.97 8.08 -2.39 -0.02 2.95 16 41 H 0.40 18.66 7.90 -92.71 -0.73 17.93 16 42 H 0.28 13.77 8.31 -92.70 -0.77 13.00 16 43 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 44 H 0.05 1.46 8.03 -2.39 -0.02 1.44 16 45 H 0.11 2.37 7.52 -2.91 -0.02 2.35 16 46 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 47 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 48 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 49 H 0.14 1.61 7.95 -2.91 -0.02 1.59 16 Total: -1.00 -77.78 400.40 0.59 -77.18 By element: Atomic # 1 Polarization: 39.29 SS G_CDS: -0.47 Total: 38.82 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 6.07 Total: 9.94 kcal Atomic # 7 Polarization: -109.45 SS G_CDS: -6.93 Total: -116.39 kcal Atomic # 8 Polarization: -54.17 SS G_CDS: -0.09 Total: -54.27 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -77.78 0.59 -77.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752600042.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.007 kcal (2) G-P(sol) polarization free energy of solvation -77.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds