Wall clock time and date at job start Wed Apr 1 2020 03:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47185 * 2 1 4 4 N 1.46501 * 109.47143 * 239.99843 * 2 1 3 5 5 C 1.36933 * 119.99788 * 85.00231 * 4 2 1 6 6 H 1.08003 * 120.00781 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99915 * 179.97438 * 5 4 2 8 8 N 1.31617 * 120.00054 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00091 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.47099 * 90.00007 * 9 7 5 11 11 H 1.48498 * 109.47322 * 210.00454 * 9 7 5 12 12 H 1.48500 * 109.47153 * 330.00255 * 9 7 5 13 13 C 1.50701 * 109.46955 * 119.99974 * 2 1 3 14 14 C 1.38233 * 120.00066 * 259.99856 * 13 2 1 15 15 C 1.38230 * 119.99996 * 179.97438 * 14 13 2 16 16 C 1.38236 * 120.00230 * 359.97412 * 15 14 13 17 17 C 1.50697 * 120.00044 * 180.02562 * 16 15 14 18 18 N 1.46510 * 109.46815 * 90.00652 * 17 16 15 19 19 C 1.34773 * 119.99511 * 180.02562 * 18 17 16 20 20 O 1.21275 * 120.00669 * 359.97438 * 19 18 17 21 21 C 1.50700 * 119.99591 * 179.97438 * 19 18 17 22 22 H 1.09003 * 110.21577 * 320.47075 * 21 19 18 23 23 C 1.54486 * 110.32107 * 82.45083 * 21 19 18 24 24 C 1.54629 * 101.76286 * 93.62213 * 23 21 19 25 25 C 1.51291 * 104.25800 * 24.58483 * 24 23 21 26 26 O 1.21272 * 124.94453 * 164.00763 * 25 24 23 27 27 N 1.34420 * 110.11097 * 344.13817 * 25 24 23 28 28 C 1.46499 * 124.34793 * 179.43621 * 27 25 24 29 29 C 1.38232 * 119.99596 * 0.28150 * 16 15 14 30 30 C 1.38233 * 119.99745 * 79.97768 * 13 2 1 31 31 H 1.08993 * 109.46877 * 300.00159 * 1 2 3 32 32 H 1.09004 * 109.46865 * 59.99597 * 1 2 3 33 33 H 1.08995 * 109.47185 * 179.97438 * 1 2 3 34 34 H 0.96995 * 120.00322 * 264.99934 * 4 2 1 35 35 H 0.97005 * 119.99988 * 179.97438 * 8 7 5 36 36 H 1.07998 * 119.99857 * 359.97438 * 14 13 2 37 37 H 1.08005 * 120.00163 * 180.02562 * 15 14 13 38 38 H 1.08993 * 109.47452 * 330.00788 * 17 16 15 39 39 H 1.09005 * 109.47444 * 209.99994 * 17 16 15 40 40 H 0.97000 * 119.99955 * 359.97438 * 18 17 16 41 41 H 1.08999 * 110.96975 * 211.74304 * 23 21 19 42 42 H 1.08998 * 110.96690 * 335.46997 * 23 21 19 43 43 H 1.09007 * 110.48144 * 143.47624 * 24 23 21 44 44 H 1.08999 * 110.48648 * 266.12061 * 24 23 21 45 45 H 1.09002 * 109.47391 * 269.70520 * 28 27 25 46 46 H 1.09001 * 109.46813 * 149.70577 * 28 27 25 47 47 H 1.09004 * 109.47041 * 29.70704 * 28 27 25 48 48 H 1.08004 * 119.99742 * 179.72797 * 29 16 15 49 49 H 1.07997 * 120.00271 * 0.02562 * 30 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1492 -0.0075 -2.3757 6 1 1.8920 1.0403 -2.4244 7 6 2.6124 -0.6618 -3.5090 8 7 2.9254 -1.9388 -3.4499 9 14 2.7902 0.2699 -5.1183 10 1 4.1521 0.8560 -5.2031 11 1 2.5804 -0.6618 -6.2554 12 1 1.7794 1.3563 -5.1756 13 6 2.0323 -0.7104 1.2305 14 6 2.4587 0.0194 2.3243 15 6 2.9189 -0.6322 3.4531 16 6 2.9523 -2.0138 3.4885 17 6 3.4535 -2.7241 4.7194 18 7 2.3331 -2.9723 5.6301 19 6 2.5452 -3.5997 6.8039 20 8 3.6633 -3.9592 7.1061 21 6 1.3928 -3.8545 7.7410 22 1 0.7201 -2.9970 7.7527 23 6 0.6281 -5.1282 7.3172 24 6 1.3123 -6.2100 8.1847 25 6 1.8664 -5.4447 9.3663 26 8 2.2335 -5.9456 10.4079 27 7 1.8898 -4.1284 9.0945 28 6 2.3572 -3.1001 10.0273 29 6 2.5309 -2.7435 2.3927 30 6 2.0662 -2.0919 1.2655 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 2.2491 -1.6318 -1.1526 35 1 3.2487 -2.3961 -4.2419 36 1 2.4323 1.0987 2.2969 37 1 3.2517 -0.0621 4.3079 38 1 4.1975 -2.1040 5.2192 39 1 3.9055 -3.6736 4.4323 40 1 1.4388 -2.6845 5.3886 41 1 -0.4313 -5.0460 7.5598 42 1 0.7685 -5.3323 6.2557 43 1 0.5843 -6.9514 8.5142 44 1 2.1209 -6.6876 7.6313 45 1 1.5194 -2.7471 10.6287 46 1 2.7790 -2.2658 9.4668 47 1 3.1211 -3.5221 10.6805 48 1 2.5611 -3.8228 2.4186 49 1 1.7332 -2.6621 0.4109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754947777.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:30 Heat of formation + Delta-G solvation = -30.041765 kcal Electronic energy + Delta-G solvation = -29155.225814 eV Core-core repulsion = 25082.387804 eV Total energy + Delta-G solvation = -4072.838010 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.34749 -39.72660 -39.03174 -36.64182 -35.99672 -34.68214 -33.26632 -32.41665 -30.83218 -30.58764 -28.87956 -28.19626 -27.07554 -25.91675 -23.98220 -23.15928 -22.64514 -21.72511 -21.06516 -19.94080 -19.70807 -18.25065 -17.49574 -17.26712 -16.49252 -16.16339 -15.70566 -15.67960 -15.32061 -15.02193 -14.77639 -14.42508 -14.18133 -14.04680 -13.94498 -13.48867 -13.44593 -13.26524 -13.15365 -13.07703 -13.03719 -12.67955 -12.58721 -12.36993 -12.00761 -11.93366 -11.78991 -11.61913 -11.29690 -10.98659 -10.88522 -10.69588 -10.48441 -10.34834 -10.18375 -10.05561 -9.73745 -9.41562 -9.16842 -9.02624 -8.73004 -8.39882 -7.05672 -5.83950 -3.12924 1.35759 1.59900 2.11373 2.22145 2.46499 3.00153 3.39073 3.44303 3.45880 3.82613 3.89054 3.96075 4.20696 4.35532 4.53299 4.57514 4.62007 4.79934 4.86837 4.89559 5.11652 5.12752 5.17126 5.22239 5.29080 5.31169 5.36754 5.38993 5.50261 5.51226 5.64580 5.70200 5.88020 5.94680 5.96382 6.04470 6.16828 6.23378 6.27560 6.42724 6.54358 6.62732 6.63275 6.68629 6.88062 7.08492 7.12424 7.19498 7.63441 7.75654 7.84038 8.34235 9.45757 10.00770 10.35802 11.38581 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.026876 B = 0.001737 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.567319 B =16117.009342 C =16333.780010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.203 3.797 3 H 0.056 0.944 4 N -0.721 5.721 5 C -0.241 4.241 6 H 0.071 0.929 7 C -0.012 4.012 8 N -0.932 5.932 9 Si 0.908 3.092 10 H -0.290 1.290 11 H -0.291 1.291 12 H -0.282 1.282 13 C -0.052 4.052 14 C -0.121 4.121 15 C -0.102 4.102 16 C -0.132 4.132 17 C 0.167 3.833 18 N -0.719 5.719 19 C 0.497 3.503 20 O -0.527 6.527 21 C 0.113 3.887 22 H 0.112 0.888 23 C -0.119 4.119 24 C -0.156 4.156 25 C 0.525 3.475 26 O -0.529 6.529 27 N -0.602 5.602 28 C 0.098 3.902 29 C -0.098 4.098 30 C -0.106 4.106 31 H 0.037 0.963 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.385 0.615 35 H 0.256 0.744 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.404 0.596 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.059 0.941 46 H 0.070 0.930 47 H 0.077 0.923 48 H 0.119 0.881 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.063 -2.290 23.468 24.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.093 3.907 3 H 0.074 0.926 4 N -0.363 5.363 5 C -0.372 4.372 6 H 0.089 0.911 7 C -0.208 4.208 8 N -0.580 5.580 9 Si 0.739 3.261 10 H -0.217 1.217 11 H -0.217 1.217 12 H -0.207 1.207 13 C -0.053 4.053 14 C -0.140 4.140 15 C -0.120 4.120 16 C -0.133 4.133 17 C 0.045 3.955 18 N -0.371 5.371 19 C 0.281 3.719 20 O -0.402 6.402 21 C 0.005 3.995 22 H 0.130 0.870 23 C -0.157 4.157 24 C -0.196 4.196 25 C 0.313 3.687 26 O -0.405 6.405 27 N -0.336 5.336 28 C -0.043 4.043 29 C -0.117 4.117 30 C -0.124 4.124 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.238 0.762 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.126 0.874 44 H 0.126 0.874 45 H 0.078 0.922 46 H 0.089 0.911 47 H 0.096 0.904 48 H 0.137 0.863 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.983 -2.645 24.162 25.031 hybrid contribution -0.073 0.510 -1.302 1.400 sum -6.056 -2.135 22.859 23.744 Atomic orbital electron populations 1.22420 0.98225 1.01132 1.00163 1.19258 0.92175 0.95026 0.84216 0.92622 1.42517 1.78227 1.10694 1.04907 1.19235 1.36825 0.94014 0.87124 0.91058 1.24749 1.01941 0.96008 0.98141 1.69654 1.50629 1.08657 1.29027 0.86184 0.77826 0.78599 0.83524 1.21693 1.21747 1.20725 1.20549 0.95099 0.94071 0.95576 1.21021 0.99992 0.99834 0.93150 1.20917 0.99600 0.93487 0.98043 1.19614 1.04377 0.93826 0.95440 1.20167 0.88151 1.00033 0.87188 1.46165 1.12424 1.59709 1.18842 1.20974 0.90631 0.78071 0.82251 1.90753 1.24353 1.50326 1.74754 1.21620 0.93935 1.01405 0.82562 0.86987 1.22591 1.00052 0.91426 1.01668 1.22365 1.02524 0.98816 0.95888 1.20829 0.77125 0.82375 0.88331 1.90727 1.49038 1.72371 1.28362 1.47829 1.64647 1.07674 1.13458 1.21565 0.99810 0.90430 0.92526 1.21015 0.98222 0.99478 0.92953 1.21099 0.99091 0.94436 0.97760 0.94346 0.92369 0.93320 0.77996 0.93426 0.86113 0.86531 0.90820 0.90654 0.76167 0.88351 0.88386 0.87413 0.87405 0.92232 0.91121 0.90384 0.86306 0.85341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.47 37.16 0.35 -2.32 16 2 C 0.20 3.80 3.09 -69.08 -0.21 3.59 16 3 H 0.06 1.06 7.94 -51.93 -0.41 0.65 16 4 N -0.72 -17.21 5.07 -54.55 -0.28 -17.49 16 5 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 6 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -27.34 13.06 55.49 0.72 -26.62 16 9 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 C -0.05 -0.83 4.95 -104.63 -0.52 -1.34 16 14 C -0.12 -1.62 9.67 -39.59 -0.38 -2.00 16 15 C -0.10 -1.15 9.70 -39.58 -0.38 -1.53 16 16 C -0.13 -1.44 5.25 -104.63 -0.55 -1.99 16 17 C 0.17 1.60 5.80 -5.19 -0.03 1.57 16 18 N -0.72 -5.32 5.55 -61.47 -0.34 -5.66 16 19 C 0.50 4.37 6.99 -10.99 -0.08 4.29 16 20 O -0.53 -7.04 16.58 5.56 0.09 -6.95 16 21 C 0.11 0.68 3.49 -68.16 -0.24 0.44 16 22 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 23 C -0.12 -0.50 6.69 -25.09 -0.17 -0.67 16 24 C -0.16 -1.05 6.85 -26.74 -0.18 -1.24 16 25 C 0.53 5.62 8.02 -10.86 -0.09 5.53 16 26 O -0.53 -7.77 17.58 5.56 0.10 -7.67 16 27 N -0.60 -5.24 2.56 -174.01 -0.45 -5.69 16 28 C 0.10 0.73 10.96 59.85 0.66 1.39 16 29 C -0.10 -1.22 9.70 -39.58 -0.38 -1.60 16 30 C -0.11 -1.62 9.06 -39.58 -0.36 -1.98 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.38 9.68 6.07 -40.82 -0.25 9.44 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 36 H 0.12 1.44 8.04 -52.49 -0.42 1.02 16 37 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 38 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 39 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 40 H 0.40 2.11 8.46 -40.82 -0.35 1.76 16 41 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.10 0.34 7.89 -51.93 -0.41 -0.07 16 43 H 0.11 0.55 8.14 -51.92 -0.42 0.13 16 44 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.08 0.69 7.92 -51.93 -0.41 0.28 16 48 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 49 H 0.13 2.15 6.92 -52.49 -0.36 1.79 16 LS Contribution 411.35 15.07 6.20 6.20 Total: -1.00 -35.23 411.35 -9.43 -44.66 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -7.65 Total: 7.31 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -2.81 Total: -4.90 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: -0.34 Total: -55.46 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: 0.19 Total: -14.62 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.23 -9.43 -44.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754947777.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.617 kcal (2) G-P(sol) polarization free energy of solvation -35.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds