Wall clock time and date at job start Wed Apr 1 2020 03:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47185 * 2 1 4 4 N 1.46501 * 109.47143 * 239.99843 * 2 1 3 5 5 C 1.36933 * 119.99788 * 85.00231 * 4 2 1 6 6 H 1.08003 * 120.00781 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99915 * 179.97438 * 5 4 2 8 8 N 1.31617 * 120.00054 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00091 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.47099 * 90.00007 * 9 7 5 11 11 H 1.48498 * 109.47322 * 210.00454 * 9 7 5 12 12 H 1.48500 * 109.47153 * 330.00255 * 9 7 5 13 13 C 1.50701 * 109.46955 * 119.99974 * 2 1 3 14 14 C 1.38233 * 120.00066 * 259.99856 * 13 2 1 15 15 C 1.38230 * 119.99996 * 179.97438 * 14 13 2 16 16 C 1.38236 * 120.00230 * 359.97412 * 15 14 13 17 17 C 1.50697 * 120.00044 * 180.02562 * 16 15 14 18 18 N 1.46510 * 109.46815 * 90.00652 * 17 16 15 19 19 C 1.34773 * 119.99511 * 180.02562 * 18 17 16 20 20 O 1.21275 * 120.00669 * 359.97438 * 19 18 17 21 21 C 1.50700 * 119.99591 * 179.97438 * 19 18 17 22 22 H 1.09003 * 110.21577 * 320.47075 * 21 19 18 23 23 C 1.54486 * 110.32107 * 82.45083 * 21 19 18 24 24 C 1.54629 * 101.76286 * 93.62213 * 23 21 19 25 25 C 1.51291 * 104.25800 * 24.58483 * 24 23 21 26 26 O 1.21272 * 124.94453 * 164.00763 * 25 24 23 27 27 N 1.34420 * 110.11097 * 344.13817 * 25 24 23 28 28 C 1.46499 * 124.34793 * 179.43621 * 27 25 24 29 29 C 1.38232 * 119.99596 * 0.28150 * 16 15 14 30 30 C 1.38233 * 119.99745 * 79.97768 * 13 2 1 31 31 H 1.08993 * 109.46877 * 300.00159 * 1 2 3 32 32 H 1.09004 * 109.46865 * 59.99597 * 1 2 3 33 33 H 1.08995 * 109.47185 * 179.97438 * 1 2 3 34 34 H 0.96995 * 120.00322 * 264.99934 * 4 2 1 35 35 H 0.97005 * 119.99988 * 179.97438 * 8 7 5 36 36 H 1.07998 * 119.99857 * 359.97438 * 14 13 2 37 37 H 1.08005 * 120.00163 * 180.02562 * 15 14 13 38 38 H 1.08993 * 109.47452 * 330.00788 * 17 16 15 39 39 H 1.09005 * 109.47444 * 209.99994 * 17 16 15 40 40 H 0.97000 * 119.99955 * 359.97438 * 18 17 16 41 41 H 1.08999 * 110.96975 * 211.74304 * 23 21 19 42 42 H 1.08998 * 110.96690 * 335.46997 * 23 21 19 43 43 H 1.09007 * 110.48144 * 143.47624 * 24 23 21 44 44 H 1.08999 * 110.48648 * 266.12061 * 24 23 21 45 45 H 1.09002 * 109.47391 * 269.70520 * 28 27 25 46 46 H 1.09001 * 109.46813 * 149.70577 * 28 27 25 47 47 H 1.09004 * 109.47041 * 29.70704 * 28 27 25 48 48 H 1.08004 * 119.99742 * 179.72797 * 29 16 15 49 49 H 1.07997 * 120.00271 * 0.02562 * 30 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1492 -0.0075 -2.3757 6 1 1.8920 1.0403 -2.4244 7 6 2.6124 -0.6618 -3.5090 8 7 2.9254 -1.9388 -3.4499 9 14 2.7902 0.2699 -5.1183 10 1 4.1521 0.8560 -5.2031 11 1 2.5804 -0.6618 -6.2554 12 1 1.7794 1.3563 -5.1756 13 6 2.0323 -0.7104 1.2305 14 6 2.4587 0.0194 2.3243 15 6 2.9189 -0.6322 3.4531 16 6 2.9523 -2.0138 3.4885 17 6 3.4535 -2.7241 4.7194 18 7 2.3331 -2.9723 5.6301 19 6 2.5452 -3.5997 6.8039 20 8 3.6633 -3.9592 7.1061 21 6 1.3928 -3.8545 7.7410 22 1 0.7201 -2.9970 7.7527 23 6 0.6281 -5.1282 7.3172 24 6 1.3123 -6.2100 8.1847 25 6 1.8664 -5.4447 9.3663 26 8 2.2335 -5.9456 10.4079 27 7 1.8898 -4.1284 9.0945 28 6 2.3572 -3.1001 10.0273 29 6 2.5309 -2.7435 2.3927 30 6 2.0662 -2.0919 1.2655 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 2.2491 -1.6318 -1.1526 35 1 3.2487 -2.3961 -4.2419 36 1 2.4323 1.0987 2.2969 37 1 3.2517 -0.0621 4.3079 38 1 4.1975 -2.1040 5.2192 39 1 3.9055 -3.6736 4.4323 40 1 1.4388 -2.6845 5.3886 41 1 -0.4313 -5.0460 7.5598 42 1 0.7685 -5.3323 6.2557 43 1 0.5843 -6.9514 8.5142 44 1 2.1209 -6.6876 7.6313 45 1 1.5194 -2.7471 10.6287 46 1 2.7790 -2.2658 9.4668 47 1 3.1211 -3.5221 10.6805 48 1 2.5611 -3.8228 2.4186 49 1 1.7332 -2.6621 0.4109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754947777.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:28 Heat of formation + Delta-G solvation = -53.737189 kcal Electronic energy + Delta-G solvation = -29156.253325 eV Core-core repulsion = 25082.387804 eV Total energy + Delta-G solvation = -4073.865521 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.00446 -40.68575 -39.93586 -37.57058 -37.18672 -35.76601 -34.15136 -33.74519 -31.98229 -31.71229 -30.20305 -29.22163 -27.64210 -26.88750 -25.78849 -23.91650 -23.59829 -22.85876 -21.74440 -21.09822 -20.50197 -19.38307 -18.87504 -17.93074 -17.32703 -17.15619 -16.77533 -16.63111 -16.26535 -16.07865 -15.84014 -15.67401 -15.08155 -15.01900 -14.73874 -14.69012 -14.64045 -14.39961 -14.21205 -13.82757 -13.80214 -13.63220 -13.44980 -13.40298 -13.24893 -12.96903 -12.76955 -12.68791 -12.45776 -12.41099 -12.25577 -12.13814 -11.98839 -11.58068 -11.50614 -11.22917 -10.99801 -10.96891 -10.14423 -9.87040 -9.75210 -9.47252 -9.00944 -7.93618 -5.21502 0.33850 0.57075 1.39836 1.48029 1.49051 1.51249 1.57290 1.85961 2.32143 2.56775 2.95125 3.27933 3.41117 3.45012 3.68100 3.75383 3.90329 3.91260 4.02200 4.07126 4.17830 4.20106 4.27346 4.38230 4.38933 4.57392 4.60288 4.63198 4.72897 4.78624 4.80096 4.80444 4.83693 4.93923 5.03713 5.04333 5.10604 5.15636 5.25981 5.34113 5.38365 5.45684 5.51641 5.59868 5.66721 5.87996 5.96151 6.13590 6.29041 6.52718 7.02993 7.19918 7.35248 8.10854 8.34066 9.29850 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.026876 B = 0.001737 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.567319 B =16117.009342 C =16333.780010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.197 3.803 3 H 0.052 0.948 4 N -0.735 5.735 5 C -0.237 4.237 6 H 0.077 0.923 7 C -0.077 4.077 8 N -0.969 5.969 9 Si 0.970 3.030 10 H -0.290 1.290 11 H -0.297 1.297 12 H -0.268 1.268 13 C -0.074 4.074 14 C -0.122 4.122 15 C -0.092 4.092 16 C -0.113 4.113 17 C 0.173 3.827 18 N -0.703 5.703 19 C 0.500 3.500 20 O -0.578 6.578 21 C 0.114 3.886 22 H 0.154 0.846 23 C -0.108 4.108 24 C -0.155 4.155 25 C 0.508 3.492 26 O -0.584 6.584 27 N -0.604 5.604 28 C 0.093 3.907 29 C -0.096 4.096 30 C -0.124 4.124 31 H 0.072 0.928 32 H 0.040 0.960 33 H 0.042 0.958 34 H 0.374 0.626 35 H 0.250 0.750 36 H 0.136 0.864 37 H 0.147 0.853 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.419 0.581 41 H 0.130 0.870 42 H 0.110 0.890 43 H 0.124 0.876 44 H 0.099 0.901 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.054 0.946 48 H 0.134 0.866 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.617 -0.727 24.660 26.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.089 3.911 3 H 0.070 0.930 4 N -0.376 5.376 5 C -0.369 4.369 6 H 0.095 0.905 7 C -0.269 4.269 8 N -0.620 5.620 9 Si 0.800 3.200 10 H -0.217 1.217 11 H -0.224 1.224 12 H -0.193 1.193 13 C -0.075 4.075 14 C -0.140 4.140 15 C -0.110 4.110 16 C -0.114 4.114 17 C 0.050 3.950 18 N -0.356 5.356 19 C 0.285 3.715 20 O -0.456 6.456 21 C 0.006 3.994 22 H 0.171 0.829 23 C -0.145 4.145 24 C -0.195 4.195 25 C 0.298 3.702 26 O -0.464 6.464 27 N -0.336 5.336 28 C -0.048 4.048 29 C -0.114 4.114 30 C -0.142 4.142 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.208 0.792 35 H 0.059 0.941 36 H 0.154 0.846 37 H 0.164 0.836 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.256 0.744 41 H 0.149 0.851 42 H 0.129 0.871 43 H 0.142 0.858 44 H 0.117 0.883 45 H 0.100 0.900 46 H 0.100 0.900 47 H 0.072 0.928 48 H 0.151 0.849 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.605 -1.002 25.352 26.487 hybrid contribution 0.420 0.068 -1.538 1.596 sum -7.185 -0.934 23.814 24.892 Atomic orbital electron populations 1.22243 0.96610 1.00981 1.00906 1.19440 0.93188 0.94627 0.83811 0.92963 1.42729 1.78503 1.10449 1.05950 1.19629 1.34747 0.94287 0.88218 0.90509 1.25525 1.03090 0.96901 1.01399 1.69810 1.52686 1.10167 1.29372 0.85181 0.77803 0.77486 0.79546 1.21698 1.22424 1.19320 1.20314 0.97427 0.94281 0.95471 1.21178 0.99462 1.00586 0.92815 1.21203 0.98076 0.93641 0.98115 1.19704 1.02606 0.93854 0.95236 1.20002 0.88732 0.99494 0.86791 1.45963 1.12614 1.59004 1.18049 1.21470 0.90625 0.76968 0.82442 1.90750 1.26617 1.52448 1.75823 1.21927 0.93181 1.03952 0.80323 0.82885 1.22711 1.01183 0.88899 1.01743 1.22411 1.02746 0.99665 0.94640 1.21589 0.76613 0.83406 0.88571 1.90683 1.51520 1.73504 1.30701 1.48044 1.63683 1.07327 1.14547 1.21658 1.00203 0.90283 0.92657 1.21126 0.97612 1.00349 0.92363 1.20970 1.00740 0.94367 0.98141 0.90954 0.94121 0.93909 0.79222 0.94142 0.84648 0.83558 0.90809 0.91396 0.74392 0.85141 0.87141 0.85806 0.88291 0.90028 0.90023 0.92752 0.84856 0.87923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.83 9.47 71.98 0.68 -4.15 16 2 C 0.20 7.33 3.09 44.25 0.14 7.47 16 3 H 0.05 1.95 7.94 -2.39 -0.02 1.93 16 4 N -0.73 -35.76 5.07 -326.50 -1.66 -37.42 16 5 C -0.24 -12.80 9.93 84.04 0.83 -11.96 16 6 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 7 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 8 N -0.97 -58.50 13.06 21.65 0.28 -58.22 16 9 Si 0.97 45.44 29.55 68.60 2.03 47.47 16 10 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 11 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 13 C -0.07 -2.28 4.95 -19.87 -0.10 -2.38 16 14 C -0.12 -2.93 9.67 22.27 0.22 -2.71 16 15 C -0.09 -1.74 9.70 22.27 0.22 -1.52 16 16 C -0.11 -2.14 5.25 -19.87 -0.10 -2.24 16 17 C 0.17 2.80 5.80 85.63 0.50 3.30 16 18 N -0.70 -7.88 5.55 -466.78 -2.59 -10.47 16 19 C 0.50 7.41 6.99 87.66 0.61 8.02 16 20 O -0.58 -14.78 16.58 -3.01 -0.05 -14.83 16 21 C 0.11 0.97 3.49 44.70 0.16 1.12 16 22 H 0.15 0.13 8.14 -2.39 -0.02 0.11 16 23 C -0.11 -0.49 6.69 31.65 0.21 -0.28 16 24 C -0.15 -1.83 6.85 30.59 0.21 -1.63 16 25 C 0.51 10.69 8.02 87.90 0.71 11.39 16 26 O -0.58 -17.85 17.58 -3.01 -0.05 -17.90 16 27 N -0.60 -9.53 2.56 -823.04 -2.11 -11.64 16 28 C 0.09 1.29 10.96 127.77 1.40 2.69 16 29 C -0.10 -2.22 9.70 22.27 0.22 -2.01 16 30 C -0.12 -3.76 9.06 22.27 0.20 -3.56 16 31 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 34 H 0.37 19.56 6.07 -92.71 -0.56 19.00 16 35 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 36 H 0.14 2.81 8.04 -2.91 -0.02 2.78 16 37 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 38 H 0.07 1.26 8.08 -2.39 -0.02 1.25 16 39 H 0.07 1.26 8.08 -2.38 -0.02 1.24 16 40 H 0.42 2.42 8.46 -92.71 -0.78 1.63 16 41 H 0.13 -0.14 8.14 -2.39 -0.02 -0.16 16 42 H 0.11 0.31 7.89 -2.39 -0.02 0.29 16 43 H 0.12 1.03 8.14 -2.38 -0.02 1.02 16 44 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.05 1.00 7.92 -2.38 -0.02 0.98 16 48 H 0.13 2.65 8.06 -2.91 -0.02 2.62 16 49 H 0.10 3.61 6.92 -2.91 -0.02 3.59 16 Total: -1.00 -80.89 411.35 2.03 -78.86 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: -0.38 Total: 26.48 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 6.56 Total: -2.34 kcal Atomic # 7 Polarization: -111.67 SS G_CDS: -6.07 Total: -117.74 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -0.10 Total: -32.74 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -80.89 2.03 -78.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754947777.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.125 kcal (2) G-P(sol) polarization free energy of solvation -80.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds