Wall clock time and date at job start Wed Apr 1 2020 03:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46941 * 2 1 4 4 C 1.50703 * 109.47248 * 239.99865 * 2 1 3 5 5 O 1.21279 * 119.99582 * 240.00456 * 4 2 1 6 6 N 1.34777 * 119.99637 * 60.00229 * 4 2 1 7 7 C 1.46507 * 119.99440 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.46491 * 179.97438 * 7 6 4 9 9 H 1.08999 * 110.27106 * 60.62250 * 8 7 6 10 10 C 1.55012 * 110.29870 * 182.79557 * 8 7 6 11 11 C 1.55456 * 101.02849 * 155.01350 * 10 8 7 12 12 C 1.53774 * 102.01525 * 326.41087 * 11 10 8 13 13 C 1.53271 * 114.72737 * 151.73556 * 12 11 10 14 14 N 1.47714 * 85.91018 * 92.61565 * 13 12 11 15 15 C 1.36939 * 134.43453 * 204.18895 * 14 13 12 16 16 H 1.08001 * 119.99679 * 173.45503 * 15 14 13 17 17 C 1.38818 * 120.00106 * 353.44427 * 15 14 13 18 18 N 1.31618 * 119.99579 * 5.08285 * 17 15 14 19 19 Si 1.86799 * 119.99931 * 185.07744 * 17 15 14 20 20 H 1.48498 * 109.46739 * 94.99252 * 19 17 15 21 21 H 1.48501 * 109.47022 * 214.98803 * 19 17 15 22 22 H 1.48495 * 109.47228 * 334.99309 * 19 17 15 23 23 C 1.47706 * 91.12491 * 24.15469 * 14 13 12 24 24 O 1.42531 * 108.37843 * 20.95217 * 12 11 10 25 25 C 1.50703 * 109.46804 * 119.99871 * 2 1 3 26 26 C 1.38673 * 120.41904 * 240.00081 * 25 2 1 27 27 C 1.38625 * 118.41775 * 180.02562 * 26 25 2 28 28 C 1.38222 * 119.16429 * 359.97438 * 27 26 25 29 29 N 1.31854 * 120.76387 * 359.97438 * 28 27 26 30 30 C 1.31885 * 121.72749 * 359.71122 * 29 28 27 31 31 H 1.09001 * 109.47491 * 300.00413 * 1 2 3 32 32 H 1.09005 * 109.47019 * 60.00077 * 1 2 3 33 33 H 1.08996 * 109.46940 * 179.97438 * 1 2 3 34 34 H 0.96993 * 120.00360 * 359.97438 * 6 4 2 35 35 H 1.08996 * 109.47007 * 60.00332 * 7 6 4 36 36 H 1.08996 * 109.46879 * 299.99918 * 7 6 4 37 37 H 1.09001 * 111.10648 * 272.95624 * 10 8 7 38 38 H 1.08999 * 111.10799 * 37.06954 * 10 8 7 39 39 H 1.08997 * 110.91848 * 208.23246 * 11 10 8 40 40 H 1.09000 * 110.95187 * 84.60678 * 11 10 8 41 41 H 1.08993 * 113.79685 * 206.86210 * 13 12 11 42 42 H 1.08997 * 113.80287 * 338.37111 * 13 12 11 43 43 H 0.97001 * 119.99798 * 179.97438 * 18 17 15 44 44 H 1.09003 * 113.79996 * 221.59385 * 23 14 13 45 45 H 1.09002 * 113.80233 * 90.09889 * 23 14 13 46 46 H 1.07999 * 120.78759 * 0.02562 * 26 25 2 47 47 H 1.08008 * 120.41708 * 179.97438 * 27 26 25 48 48 H 1.08002 * 119.62051 * 179.97438 * 28 27 26 49 49 H 1.07999 * 119.62319 * 180.31091 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2499 -2.4546 7 6 2.1957 -0.9403 -3.6507 8 6 1.6851 -0.2194 -4.8999 9 1 2.0495 0.8077 -4.9187 10 6 2.1330 -0.9746 -6.1774 11 6 1.0388 -0.5266 -7.1867 12 6 -0.1967 -0.3929 -6.2810 13 6 -1.2321 0.6325 -6.7562 14 7 -1.8817 -0.5007 -7.4461 15 6 -2.7143 -0.6148 -8.5272 16 1 -2.9763 -1.5916 -8.9062 17 6 -3.2218 0.5249 -9.1359 18 7 -2.8250 1.7153 -8.7385 19 14 -4.4678 0.3691 -10.5189 20 1 -5.8403 0.4843 -9.9638 21 1 -4.2430 1.4504 -11.5117 22 1 -4.3105 -0.9510 -11.1804 23 6 -1.2729 -1.4613 -6.5036 24 8 0.2471 -0.2397 -4.9352 25 6 2.0323 -0.7104 1.2305 26 6 2.8300 -0.0449 2.1491 27 6 3.2694 -0.7384 3.2660 28 6 2.9000 -2.0607 3.4263 29 7 2.1391 -2.6614 2.5325 30 6 1.6978 -2.0312 1.4614 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.1489 0.5385 -2.5436 35 1 1.8327 -1.9680 -3.6509 36 1 3.2857 -0.9398 -3.6505 37 1 3.1218 -0.6484 -6.4999 38 1 2.1081 -2.0535 -6.0246 39 1 0.8802 -1.2867 -7.9516 40 1 1.2949 0.4312 -7.6396 41 1 -1.8305 1.0587 -5.9511 42 1 -0.8273 1.3855 -7.4323 43 1 -3.1793 2.5117 -9.1640 44 1 -0.9004 -2.3684 -6.9795 45 1 -1.8836 -1.6608 -5.6231 46 1 3.1025 0.9892 1.9978 47 1 3.8925 -0.2517 4.0018 48 1 3.2385 -2.6082 4.2935 49 1 1.0723 -2.5549 0.7536 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755056555.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:39 Heat of formation + Delta-G solvation = 7.242734 kcal Electronic energy + Delta-G solvation = -29825.776155 eV Core-core repulsion = 25754.554922 eV Total energy + Delta-G solvation = -4071.221233 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.87027 -39.98810 -39.32161 -36.63325 -34.87126 -34.56693 -32.39870 -32.11195 -31.89099 -30.22000 -28.98600 -26.97322 -25.27827 -24.96242 -23.97962 -23.77067 -22.45553 -21.78727 -21.25439 -20.07840 -18.78785 -17.54724 -17.37070 -16.91475 -16.58935 -16.46795 -16.11776 -15.19948 -15.16326 -15.07006 -14.63217 -14.30725 -14.08013 -13.91184 -13.75065 -13.72610 -13.32423 -13.18287 -13.02259 -12.81009 -12.61249 -12.44162 -12.16760 -11.81062 -11.77799 -11.65836 -11.44324 -11.22546 -11.01064 -10.86707 -10.71463 -10.53843 -10.37431 -10.15273 -10.03568 -9.80944 -9.65177 -9.60753 -9.19427 -9.16056 -8.83371 -8.76230 -6.92437 -5.83381 -3.14641 0.86557 1.05165 2.48410 3.00453 3.36307 3.41520 3.43467 3.63087 3.95792 4.08336 4.37856 4.42207 4.45690 4.64001 4.67550 4.71306 4.77673 4.81658 4.84573 4.97431 5.05319 5.14389 5.24561 5.26662 5.29021 5.37497 5.45094 5.50094 5.53508 5.56143 5.65364 5.68863 5.80211 5.83214 5.88695 6.00900 6.04123 6.28329 6.32336 6.36129 6.45798 6.46575 6.57962 6.69738 6.99370 7.17853 7.38061 7.48154 7.66758 7.77718 7.92043 8.08369 8.99514 9.65259 10.54684 11.34668 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023475 B = 0.001939 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.473319 B =14436.251773 C =14895.196518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.067 4.067 3 H 0.107 0.893 4 C 0.516 3.484 5 O -0.538 6.538 6 N -0.718 5.718 7 C 0.124 3.876 8 C 0.067 3.933 9 H 0.074 0.926 10 C -0.148 4.148 11 C -0.113 4.113 12 C 0.056 3.944 13 C 0.168 3.832 14 N -0.605 5.605 15 C -0.221 4.221 16 H 0.081 0.919 17 C -0.006 4.006 18 N -0.919 5.919 19 Si 0.911 3.089 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.117 3.883 24 O -0.365 6.365 25 C -0.117 4.117 26 C -0.070 4.070 27 C -0.177 4.177 28 C 0.094 3.906 29 N -0.486 5.486 30 C 0.134 3.866 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.407 0.593 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.034 0.966 42 H 0.071 0.929 43 H 0.254 0.746 44 H 0.045 0.955 45 H 0.040 0.960 46 H 0.133 0.867 47 H 0.134 0.866 48 H 0.153 0.847 49 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.862 -0.457 19.814 24.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.089 4.089 3 H 0.125 0.875 4 C 0.302 3.698 5 O -0.415 6.415 6 N -0.369 5.369 7 C 0.001 3.999 8 C 0.008 3.992 9 H 0.092 0.908 10 C -0.186 4.186 11 C -0.150 4.150 12 C 0.016 3.984 13 C 0.043 3.957 14 N -0.333 5.333 15 C -0.349 4.349 16 H 0.099 0.901 17 C -0.203 4.203 18 N -0.565 5.565 19 Si 0.741 3.259 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.205 1.205 23 C -0.009 4.009 24 O -0.283 6.283 25 C -0.119 4.119 26 C -0.096 4.096 27 C -0.197 4.197 28 C -0.062 4.062 29 N -0.194 5.194 30 C -0.023 4.023 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.242 0.758 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.052 0.948 42 H 0.089 0.911 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.151 0.849 47 H 0.152 0.848 48 H 0.171 0.829 49 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 13.815 -1.923 19.919 24.317 hybrid contribution -0.676 1.336 -1.084 1.849 sum 13.139 -0.587 18.836 22.973 Atomic orbital electron populations 1.21839 0.91295 1.03564 1.03481 1.20228 0.98192 1.00152 0.90318 0.87529 1.20397 0.80309 0.84682 0.84463 1.90732 1.37870 1.26133 1.86723 1.45877 1.53424 1.32404 1.05204 1.21582 0.98684 0.97009 0.82667 1.23166 0.83482 0.98656 0.93882 0.90813 1.23266 0.99717 1.00994 0.94658 1.22618 0.92219 1.02757 0.97450 1.24326 0.94052 1.00123 0.79908 1.22445 0.88626 0.91382 0.93287 1.45636 1.56336 1.02332 1.28980 1.18975 1.20030 0.93033 1.02851 0.90076 1.24831 1.00208 0.95155 1.00141 1.69834 1.45818 0.96715 1.44153 0.86111 0.81430 0.77138 0.81180 1.21572 1.21680 1.20512 1.22812 0.91875 0.93408 0.92788 1.88341 1.18118 1.93759 1.28066 1.20336 0.99492 0.96005 0.96079 1.21457 0.94728 1.00105 0.93267 1.22080 1.02185 0.96350 0.99049 1.22783 0.93752 0.92321 0.97374 1.67728 1.10414 1.38473 1.02806 1.22542 0.95575 0.90880 0.93282 0.91139 0.90807 0.91564 0.75808 0.90754 0.90574 0.90168 0.90326 0.89740 0.90371 0.94819 0.91073 0.93572 0.93705 0.94248 0.84903 0.84835 0.82921 0.83135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.90 37.16 0.33 -0.74 16 2 C -0.07 -0.56 2.92 -92.92 -0.27 -0.83 16 3 H 0.11 0.64 7.93 -51.93 -0.41 0.23 16 4 C 0.52 5.85 7.03 -10.98 -0.08 5.77 16 5 O -0.54 -8.12 15.15 5.56 0.08 -8.04 16 6 N -0.72 -7.51 5.37 -60.29 -0.32 -7.83 16 7 C 0.12 1.41 5.40 -4.04 -0.02 1.38 16 8 C 0.07 0.81 3.52 -25.67 -0.09 0.72 16 9 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 10 C -0.15 -1.76 6.58 -24.36 -0.16 -1.92 16 11 C -0.11 -1.77 6.32 -25.02 -0.16 -1.93 16 12 C 0.06 1.04 1.68 -90.05 -0.15 0.89 16 13 C 0.17 3.92 6.92 -3.24 -0.02 3.90 16 14 N -0.60 -15.33 3.67 -181.31 -0.66 -15.99 16 15 C -0.22 -6.13 10.69 -15.06 -0.16 -6.29 16 16 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 17 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 18 N -0.92 -26.79 11.51 55.49 0.64 -26.15 16 19 Si 0.91 21.83 29.56 -169.99 -5.02 16.81 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C 0.12 2.44 8.37 -3.25 -0.03 2.42 16 24 O -0.36 -5.86 10.67 -35.23 -0.38 -6.24 16 25 C -0.12 -1.14 4.40 -104.48 -0.46 -1.60 16 26 C -0.07 -0.57 9.81 -39.28 -0.39 -0.95 16 27 C -0.18 -1.36 10.11 -39.44 -0.40 -1.76 16 28 C 0.09 0.87 11.18 -17.55 -0.20 0.68 16 29 N -0.49 -5.87 10.36 -13.25 -0.14 -6.01 16 30 C 0.13 1.57 9.14 -17.55 -0.16 1.41 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.52 7.56 -51.93 -0.39 0.13 16 33 H 0.07 0.55 7.39 -51.93 -0.38 0.17 16 34 H 0.41 3.70 7.83 -40.82 -0.32 3.38 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.90 8.05 -51.93 -0.42 0.49 16 39 H 0.08 1.39 7.83 -51.93 -0.41 0.99 16 40 H 0.08 1.24 8.01 -51.93 -0.42 0.83 16 41 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 1.79 7.25 -51.93 -0.38 1.42 16 43 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.04 0.87 7.98 -51.93 -0.41 0.46 16 45 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.13 0.73 8.00 -52.49 -0.42 0.31 16 47 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 48 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 49 H 0.15 1.76 7.53 -52.49 -0.40 1.36 16 LS Contribution 400.72 15.07 6.04 6.04 Total: -1.00 -34.18 400.72 -9.98 -44.16 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -7.71 Total: 2.41 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -2.51 Total: 0.85 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: -0.49 Total: -55.99 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.29 Total: -14.28 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.18 -9.98 -44.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755056555.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.402 kcal (2) G-P(sol) polarization free energy of solvation -34.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds