Wall clock time and date at job start Wed Apr 1 2020 03:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46941 * 2 1 4 4 C 1.50703 * 109.47248 * 239.99865 * 2 1 3 5 5 O 1.21279 * 119.99582 * 240.00456 * 4 2 1 6 6 N 1.34777 * 119.99637 * 60.00229 * 4 2 1 7 7 C 1.46507 * 119.99440 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.46491 * 179.97438 * 7 6 4 9 9 H 1.08999 * 110.27106 * 60.62250 * 8 7 6 10 10 C 1.55012 * 110.29870 * 182.79557 * 8 7 6 11 11 C 1.55456 * 101.02849 * 155.01350 * 10 8 7 12 12 C 1.53774 * 102.01525 * 326.41087 * 11 10 8 13 13 C 1.53271 * 114.72737 * 151.73556 * 12 11 10 14 14 N 1.47714 * 85.91018 * 92.61565 * 13 12 11 15 15 C 1.36939 * 134.43453 * 204.18895 * 14 13 12 16 16 H 1.08001 * 119.99679 * 173.45503 * 15 14 13 17 17 C 1.38818 * 120.00106 * 353.44427 * 15 14 13 18 18 N 1.31618 * 119.99579 * 5.08285 * 17 15 14 19 19 Si 1.86799 * 119.99931 * 185.07744 * 17 15 14 20 20 H 1.48498 * 109.46739 * 94.99252 * 19 17 15 21 21 H 1.48501 * 109.47022 * 214.98803 * 19 17 15 22 22 H 1.48495 * 109.47228 * 334.99309 * 19 17 15 23 23 C 1.47706 * 91.12491 * 24.15469 * 14 13 12 24 24 O 1.42531 * 108.37843 * 20.95217 * 12 11 10 25 25 C 1.50703 * 109.46804 * 119.99871 * 2 1 3 26 26 C 1.38673 * 120.41904 * 240.00081 * 25 2 1 27 27 C 1.38625 * 118.41775 * 180.02562 * 26 25 2 28 28 C 1.38222 * 119.16429 * 359.97438 * 27 26 25 29 29 N 1.31854 * 120.76387 * 359.97438 * 28 27 26 30 30 C 1.31885 * 121.72749 * 359.71122 * 29 28 27 31 31 H 1.09001 * 109.47491 * 300.00413 * 1 2 3 32 32 H 1.09005 * 109.47019 * 60.00077 * 1 2 3 33 33 H 1.08996 * 109.46940 * 179.97438 * 1 2 3 34 34 H 0.96993 * 120.00360 * 359.97438 * 6 4 2 35 35 H 1.08996 * 109.47007 * 60.00332 * 7 6 4 36 36 H 1.08996 * 109.46879 * 299.99918 * 7 6 4 37 37 H 1.09001 * 111.10648 * 272.95624 * 10 8 7 38 38 H 1.08999 * 111.10799 * 37.06954 * 10 8 7 39 39 H 1.08997 * 110.91848 * 208.23246 * 11 10 8 40 40 H 1.09000 * 110.95187 * 84.60678 * 11 10 8 41 41 H 1.08993 * 113.79685 * 206.86210 * 13 12 11 42 42 H 1.08997 * 113.80287 * 338.37111 * 13 12 11 43 43 H 0.97001 * 119.99798 * 179.97438 * 18 17 15 44 44 H 1.09003 * 113.79996 * 221.59385 * 23 14 13 45 45 H 1.09002 * 113.80233 * 90.09889 * 23 14 13 46 46 H 1.07999 * 120.78759 * 0.02562 * 26 25 2 47 47 H 1.08008 * 120.41708 * 179.97438 * 27 26 25 48 48 H 1.08002 * 119.62051 * 179.97438 * 28 27 26 49 49 H 1.07999 * 119.62319 * 180.31091 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2499 -2.4546 7 6 2.1957 -0.9403 -3.6507 8 6 1.6851 -0.2194 -4.8999 9 1 2.0495 0.8077 -4.9187 10 6 2.1330 -0.9746 -6.1774 11 6 1.0388 -0.5266 -7.1867 12 6 -0.1967 -0.3929 -6.2810 13 6 -1.2321 0.6325 -6.7562 14 7 -1.8817 -0.5007 -7.4461 15 6 -2.7143 -0.6148 -8.5272 16 1 -2.9763 -1.5916 -8.9062 17 6 -3.2218 0.5249 -9.1359 18 7 -2.8250 1.7153 -8.7385 19 14 -4.4678 0.3691 -10.5189 20 1 -5.8403 0.4843 -9.9638 21 1 -4.2430 1.4504 -11.5117 22 1 -4.3105 -0.9510 -11.1804 23 6 -1.2729 -1.4613 -6.5036 24 8 0.2471 -0.2397 -4.9352 25 6 2.0323 -0.7104 1.2305 26 6 2.8300 -0.0449 2.1491 27 6 3.2694 -0.7384 3.2660 28 6 2.9000 -2.0607 3.4263 29 7 2.1391 -2.6614 2.5325 30 6 1.6978 -2.0312 1.4614 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.1489 0.5385 -2.5436 35 1 1.8327 -1.9680 -3.6509 36 1 3.2857 -0.9398 -3.6505 37 1 3.1218 -0.6484 -6.4999 38 1 2.1081 -2.0535 -6.0246 39 1 0.8802 -1.2867 -7.9516 40 1 1.2949 0.4312 -7.6396 41 1 -1.8305 1.0587 -5.9511 42 1 -0.8273 1.3855 -7.4323 43 1 -3.1793 2.5117 -9.1640 44 1 -0.9004 -2.3684 -6.9795 45 1 -1.8836 -1.6608 -5.6231 46 1 3.1025 0.9892 1.9978 47 1 3.8925 -0.2517 4.0018 48 1 3.2385 -2.6082 4.2935 49 1 1.0723 -2.5549 0.7536 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755056555.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:38 Heat of formation + Delta-G solvation = -16.053618 kcal Electronic energy + Delta-G solvation = -29826.786361 eV Core-core repulsion = 25754.554922 eV Total energy + Delta-G solvation = -4072.231439 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.66483 -41.27924 -40.24690 -38.13167 -35.66259 -35.59720 -34.10581 -33.12508 -32.99043 -31.10497 -30.19210 -28.61529 -26.74995 -26.08147 -25.16725 -24.46996 -23.68653 -22.98184 -22.35310 -20.92079 -20.34560 -18.77962 -18.33791 -18.06011 -17.78627 -17.26928 -17.05341 -16.97753 -16.31328 -16.00723 -15.82665 -15.58776 -15.37072 -14.96937 -14.75371 -14.59546 -14.51429 -14.14231 -14.00968 -13.93084 -13.69000 -13.39818 -13.36751 -13.21882 -12.98819 -12.84748 -12.62733 -12.48683 -12.46186 -12.32679 -12.21249 -12.01356 -11.83129 -11.64480 -11.51010 -10.92166 -10.87208 -10.61733 -10.36605 -10.25104 -10.07631 -9.88769 -8.95968 -7.94886 -5.27829 0.18265 0.39341 1.45138 1.47239 1.56012 1.62016 2.17168 2.42605 2.77860 2.93681 3.23983 3.42499 3.44058 3.60670 3.66871 3.71131 3.75956 3.80963 3.92705 4.01736 4.07522 4.14256 4.18273 4.23582 4.40447 4.45533 4.57140 4.62318 4.67555 4.73961 4.79966 4.83927 4.88871 4.91186 4.92155 4.98227 4.99877 5.10769 5.19578 5.20836 5.21584 5.22267 5.35444 5.35974 5.43397 5.49517 5.81317 5.87325 6.25976 6.54865 6.88724 7.06802 7.23617 7.56383 8.52408 9.23132 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023475 B = 0.001939 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.473319 B =14436.251773 C =14895.196518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.058 4.058 3 H 0.139 0.861 4 C 0.515 3.485 5 O -0.579 6.579 6 N -0.713 5.713 7 C 0.130 3.870 8 C 0.066 3.934 9 H 0.093 0.907 10 C -0.134 4.134 11 C -0.113 4.113 12 C 0.084 3.916 13 C 0.164 3.836 14 N -0.631 5.631 15 C -0.235 4.235 16 H 0.085 0.915 17 C -0.064 4.064 18 N -0.950 5.950 19 Si 0.979 3.021 20 H -0.289 1.289 21 H -0.292 1.292 22 H -0.266 1.266 23 C 0.114 3.886 24 O -0.373 6.373 25 C -0.125 4.125 26 C -0.072 4.072 27 C -0.169 4.169 28 C 0.078 3.922 29 N -0.522 5.522 30 C 0.108 3.892 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.415 0.585 35 H 0.058 0.942 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.011 0.989 42 H 0.046 0.954 43 H 0.250 0.750 44 H 0.061 0.939 45 H 0.037 0.963 46 H 0.166 0.834 47 H 0.168 0.832 48 H 0.175 0.825 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.634 0.264 20.702 25.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.080 4.080 3 H 0.157 0.843 4 C 0.302 3.698 5 O -0.459 6.459 6 N -0.364 5.364 7 C 0.006 3.994 8 C 0.008 3.992 9 H 0.110 0.890 10 C -0.172 4.172 11 C -0.151 4.151 12 C 0.043 3.957 13 C 0.039 3.961 14 N -0.359 5.359 15 C -0.363 4.363 16 H 0.103 0.897 17 C -0.257 4.257 18 N -0.598 5.598 19 Si 0.807 3.193 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.190 1.190 23 C -0.011 4.011 24 O -0.291 6.291 25 C -0.127 4.127 26 C -0.097 4.097 27 C -0.189 4.189 28 C -0.078 4.078 29 N -0.231 5.231 30 C -0.049 4.049 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.251 0.749 35 H 0.076 0.924 36 H 0.109 0.891 37 H 0.131 0.869 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.029 0.971 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.079 0.921 45 H 0.055 0.945 46 H 0.183 0.817 47 H 0.186 0.814 48 H 0.192 0.808 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 15.587 -1.213 20.817 26.034 hybrid contribution -1.187 1.089 -1.248 2.038 sum 14.400 -0.124 19.569 24.296 Atomic orbital electron populations 1.21826 0.90811 1.02803 1.04430 1.20256 0.98428 1.01087 0.88221 0.84322 1.20908 0.79472 0.84123 0.85297 1.90717 1.39890 1.27983 1.87297 1.45865 1.53190 1.32434 1.04923 1.21487 0.99386 0.96018 0.82510 1.23398 0.81114 1.00019 0.94624 0.88952 1.23256 0.99824 1.01433 0.92675 1.22583 0.92231 1.02612 0.97646 1.23729 0.94079 0.96107 0.81755 1.22340 0.90061 0.91549 0.92181 1.45953 1.56350 1.04282 1.29315 1.19364 1.20047 0.93295 1.03595 0.89713 1.25670 1.02214 0.94909 1.02946 1.70013 1.47024 0.97188 1.45615 0.85056 0.78582 0.77473 0.78213 1.21657 1.21837 1.19029 1.22940 0.92308 0.94034 0.91814 1.88319 1.20960 1.93576 1.26292 1.20479 0.99890 0.95402 0.96972 1.21899 0.93597 1.01550 0.92682 1.22479 1.01406 0.95608 0.99388 1.23278 0.93421 0.93594 0.97530 1.67648 1.11886 1.39867 1.03735 1.22442 0.96748 0.92096 0.93577 0.89658 0.90310 0.93238 0.74872 0.92385 0.89093 0.86944 0.89578 0.90516 0.90639 0.97114 0.93568 0.94083 0.92102 0.94550 0.81658 0.81403 0.80754 0.84922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.90 71.98 0.64 -1.32 16 2 C -0.06 -0.88 2.92 -12.28 -0.04 -0.91 16 3 H 0.14 1.19 7.93 -2.39 -0.02 1.17 16 4 C 0.51 11.16 7.03 87.66 0.62 11.78 16 5 O -0.58 -17.46 15.15 -3.03 -0.05 -17.50 16 6 N -0.71 -13.76 5.37 -463.06 -2.49 -16.25 16 7 C 0.13 2.69 5.40 86.38 0.47 3.15 16 8 C 0.07 1.45 3.52 31.28 0.11 1.56 16 9 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 10 C -0.13 -2.79 6.58 32.13 0.21 -2.58 16 11 C -0.11 -3.41 6.32 31.70 0.20 -3.21 16 12 C 0.08 3.08 1.68 -10.31 -0.02 3.07 16 13 C 0.16 7.91 6.92 86.23 0.60 8.50 16 14 N -0.63 -32.62 3.67 -732.85 -2.69 -35.31 16 15 C -0.23 -13.19 10.69 84.03 0.90 -12.29 16 16 H 0.09 4.55 7.83 -2.91 -0.02 4.53 16 17 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 18 N -0.95 -56.90 11.51 21.65 0.25 -56.65 16 19 Si 0.98 45.38 29.56 68.60 2.03 47.41 16 20 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 21 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 23 C 0.11 4.76 8.37 86.24 0.72 5.48 16 24 O -0.37 -11.59 10.67 -148.98 -1.59 -13.18 16 25 C -0.13 -2.31 4.40 -19.77 -0.09 -2.40 16 26 C -0.07 -0.97 9.81 22.47 0.22 -0.75 16 27 C -0.17 -2.16 10.11 22.36 0.23 -1.93 16 28 C 0.08 1.37 11.18 84.69 0.95 2.31 16 29 N -0.52 -12.93 10.36 -195.84 -2.03 -14.96 16 30 C 0.11 2.60 9.14 84.67 0.77 3.38 16 31 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 1.00 7.56 -2.38 -0.02 0.99 16 33 H 0.05 0.85 7.39 -2.39 -0.02 0.83 16 34 H 0.41 6.72 7.83 -92.71 -0.73 6.00 16 35 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.11 1.70 8.14 -2.39 -0.02 1.69 16 38 H 0.09 1.72 8.05 -2.39 -0.02 1.70 16 39 H 0.08 2.45 7.83 -2.39 -0.02 2.43 16 40 H 0.07 2.33 8.01 -2.39 -0.02 2.31 16 41 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.05 2.42 7.25 -2.39 -0.02 2.41 16 43 H 0.25 14.50 8.31 -92.71 -0.77 13.72 16 44 H 0.06 2.33 7.98 -2.39 -0.02 2.31 16 45 H 0.04 1.54 8.14 -2.39 -0.02 1.53 16 46 H 0.17 1.08 8.00 -2.91 -0.02 1.06 16 47 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16 48 H 0.18 2.00 8.06 -2.91 -0.02 1.98 16 49 H 0.13 3.44 7.53 -2.91 -0.02 3.42 16 Total: -1.00 -77.48 400.72 0.62 -76.86 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.23 Total: 18.91 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 6.96 Total: 10.68 kcal Atomic # 7 Polarization: -116.22 SS G_CDS: -6.95 Total: -123.17 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -1.64 Total: -30.68 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -77.48 0.62 -76.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755056555.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.806 kcal (2) G-P(sol) polarization free energy of solvation -77.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds