Wall clock time and date at job start Wed Apr 1 2020 03:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47455 * 2 1 4 4 C 1.50697 * 109.47510 * 120.00561 * 2 1 3 5 5 O 1.21282 * 120.00369 * 119.99694 * 4 2 1 6 6 N 1.34774 * 119.99835 * 299.99724 * 4 2 1 7 7 C 1.46499 * 120.00028 * 179.97438 * 6 4 2 8 8 C 1.53004 * 109.47078 * 180.02562 * 7 6 4 9 9 H 1.09005 * 109.90023 * 59.48804 * 8 7 6 10 10 C 1.54482 * 109.82991 * 180.42192 * 8 7 6 11 11 C 1.55511 * 102.38328 * 140.88038 * 10 8 7 12 12 C 1.53882 * 100.75875 * 327.02683 * 11 10 8 13 13 C 1.52378 * 115.68036 * 263.23937 * 12 11 10 14 14 N 1.47279 * 87.70124 * 218.74709 * 13 12 11 15 15 C 1.36939 * 135.93248 * 206.14202 * 14 13 12 16 16 H 1.07996 * 119.99885 * 7.80140 * 15 14 13 17 17 C 1.38809 * 119.99898 * 187.79359 * 15 14 13 18 18 N 1.31620 * 120.00135 * 195.39501 * 17 15 14 19 19 Si 1.86805 * 119.99821 * 15.39783 * 17 15 14 20 20 H 1.48499 * 109.46906 * 269.99597 * 19 17 15 21 21 H 1.48495 * 109.47290 * 29.99769 * 19 17 15 22 22 H 1.48501 * 109.47005 * 149.99956 * 19 17 15 23 23 C 1.47267 * 88.13025 * 26.39877 * 14 13 12 24 24 O 1.42408 * 106.67050 * 34.97891 * 12 11 10 25 25 C 1.50705 * 109.46970 * 240.00710 * 2 1 3 26 26 C 1.38667 * 120.41988 * 119.72002 * 25 2 1 27 27 C 1.38631 * 118.42283 * 179.77925 * 26 25 2 28 28 C 1.38229 * 119.15440 * 0.51645 * 27 26 25 29 29 N 1.31853 * 120.76843 * 359.72174 * 28 27 26 30 30 C 1.31889 * 121.72508 * 0.02562 * 29 28 27 31 31 H 1.08993 * 109.47534 * 59.99738 * 1 2 3 32 32 H 1.09007 * 109.46883 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46770 * 299.99000 * 1 2 3 34 34 H 0.97002 * 120.00077 * 0.02562 * 6 4 2 35 35 H 1.08996 * 109.47205 * 60.00451 * 7 6 4 36 36 H 1.08998 * 109.47060 * 300.00184 * 7 6 4 37 37 H 1.09002 * 110.82269 * 259.10051 * 10 8 7 38 38 H 1.08997 * 110.82594 * 22.45746 * 10 8 7 39 39 H 1.09007 * 111.15374 * 209.15747 * 11 10 8 40 40 H 1.09000 * 111.16303 * 84.90295 * 11 10 8 41 41 H 1.09001 * 113.51811 * 104.04127 * 13 12 11 42 42 H 1.08997 * 113.51376 * 333.44771 * 13 12 11 43 43 H 0.97000 * 120.00082 * 354.91676 * 18 17 15 44 44 H 1.08996 * 113.51528 * 88.30762 * 23 14 13 45 45 H 1.09004 * 113.51680 * 218.89773 * 23 14 13 46 46 H 1.08004 * 120.79459 * 0.02562 * 26 25 2 47 47 H 1.07994 * 120.42353 * 180.25664 * 27 26 25 48 48 H 1.08005 * 119.61547 * 179.74682 * 28 27 26 49 49 H 1.08002 * 119.61753 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.7297 -1.6966 1.1190 6 7 1.7069 -0.2501 2.4545 7 6 2.1948 -0.9411 3.6506 8 6 1.6845 -0.2202 4.8999 9 1 0.5945 -0.2081 4.9021 10 6 2.2031 -0.9362 6.1667 11 6 2.5337 0.2544 7.1109 12 6 2.9840 1.3142 6.0901 13 6 4.4886 1.4314 5.8800 14 7 4.3028 2.8898 5.7914 15 6 4.9639 3.9316 5.1975 16 1 5.7848 3.7362 4.5235 17 6 4.5788 5.2388 5.4617 18 7 4.9915 6.2166 4.6832 19 14 3.4748 5.6102 6.9221 20 1 2.0533 5.5399 6.4985 21 1 3.7215 4.6138 7.9951 22 1 3.7721 6.9723 7.4335 23 6 3.0990 2.7386 6.6261 24 8 2.1865 1.1244 4.9256 25 6 2.0323 -0.7103 -1.2306 26 6 2.8252 -0.0430 -2.1519 27 6 3.2683 -0.7376 -3.2668 28 6 2.8985 -2.0599 -3.4273 29 7 2.1389 -2.6611 -2.5329 30 6 1.7034 -2.0330 -1.4581 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8901 34 1 1.1489 0.5383 2.5436 35 1 3.2848 -0.9415 3.6507 36 1 1.8311 -1.9686 3.6503 37 1 1.4282 -1.5695 6.5985 38 1 3.0975 -1.5181 5.9442 39 1 3.3422 0.0001 7.7965 40 1 1.6481 0.5831 7.6547 41 1 4.8345 0.9799 4.9502 42 1 5.0741 1.1195 6.7449 43 1 5.6232 6.0349 3.9698 44 1 3.3029 2.7854 7.6958 45 1 2.2760 3.3862 6.3238 46 1 3.0947 0.9922 -2.0025 47 1 3.8909 -0.2508 -4.0028 48 1 3.2361 -2.6069 -4.2952 49 1 1.0825 -2.5585 -0.7476 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755056557.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:48 Heat of formation + Delta-G solvation = 17.405512 kcal Electronic energy + Delta-G solvation = -30394.505256 eV Core-core repulsion = 26323.724714 eV Total energy + Delta-G solvation = -4070.780542 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.81768 -40.31917 -39.31437 -36.93738 -34.80798 -34.55464 -32.39266 -32.31614 -32.08502 -30.27633 -29.26292 -27.08752 -25.49578 -25.22608 -24.01131 -23.69523 -22.35837 -21.58831 -21.08500 -20.02696 -19.32943 -17.50656 -17.42395 -17.30227 -16.77111 -16.39270 -16.12889 -15.70556 -15.16347 -15.04841 -14.58837 -14.29315 -14.16568 -13.90779 -13.78215 -13.71086 -13.40842 -13.21750 -13.13726 -13.08202 -12.83990 -12.66126 -12.43956 -12.17080 -11.78377 -11.74321 -11.65993 -11.60176 -11.36970 -10.85184 -10.70938 -10.42504 -10.18809 -10.06676 -9.76196 -9.73286 -9.59146 -9.26929 -9.11951 -9.11400 -8.94103 -8.69423 -7.17422 -6.29143 -3.19733 0.94315 1.14116 2.56812 3.04573 3.40252 3.45593 3.61042 3.68751 3.83581 4.15647 4.41267 4.44261 4.51361 4.60048 4.60907 4.72939 4.73780 4.75611 4.87993 4.89755 4.92234 4.97699 5.05529 5.11940 5.29835 5.31698 5.38084 5.44062 5.49672 5.51769 5.56445 5.62759 5.67679 5.75824 5.85684 5.92660 5.93903 6.04410 6.09830 6.14855 6.24492 6.29000 6.36340 6.40076 6.53265 6.53401 7.12957 7.42311 7.45257 7.83474 8.15378 8.25318 8.99005 9.52404 10.38085 11.21055 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012328 B = 0.002751 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.685588 B =10175.236906 C =11590.114927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.070 4.070 3 H 0.111 0.889 4 C 0.518 3.482 5 O -0.538 6.538 6 N -0.717 5.717 7 C 0.114 3.886 8 C 0.064 3.936 9 H 0.085 0.915 10 C -0.144 4.144 11 C -0.139 4.139 12 C 0.072 3.928 13 C 0.106 3.894 14 N -0.617 5.617 15 C -0.300 4.300 16 H 0.080 0.920 17 C -0.025 4.025 18 N -0.933 5.933 19 Si 1.063 2.937 20 H -0.293 1.293 21 H -0.283 1.283 22 H -0.295 1.295 23 C 0.108 3.892 24 O -0.332 6.332 25 C -0.116 4.116 26 C -0.068 4.068 27 C -0.175 4.175 28 C 0.094 3.906 29 N -0.488 5.488 30 C 0.132 3.868 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.406 0.594 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.048 0.952 42 H 0.044 0.956 43 H 0.261 0.739 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.135 0.865 47 H 0.135 0.865 48 H 0.154 0.846 49 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.399 -16.612 -6.709 21.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.092 4.092 3 H 0.129 0.871 4 C 0.304 3.696 5 O -0.415 6.415 6 N -0.368 5.368 7 C -0.010 4.010 8 C 0.005 3.995 9 H 0.102 0.898 10 C -0.182 4.182 11 C -0.177 4.177 12 C 0.031 3.969 13 C -0.021 4.021 14 N -0.344 5.344 15 C -0.427 4.427 16 H 0.098 0.902 17 C -0.223 4.223 18 N -0.575 5.575 19 Si 0.894 3.106 20 H -0.221 1.221 21 H -0.209 1.209 22 H -0.223 1.223 23 C -0.018 4.018 24 O -0.250 6.250 25 C -0.119 4.119 26 C -0.094 4.094 27 C -0.195 4.195 28 C -0.063 4.063 29 N -0.196 5.196 30 C -0.025 4.025 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.241 0.759 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.153 0.847 47 H 0.153 0.847 48 H 0.171 0.829 49 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -11.818 -16.619 -6.429 21.382 hybrid contribution 1.169 0.014 -0.388 1.232 sum -10.649 -16.605 -6.816 20.871 Atomic orbital electron populations 1.21809 0.91628 1.03064 1.03365 1.20240 0.97929 1.00668 0.90332 0.87144 1.20365 0.80232 0.84580 0.84436 1.90724 1.37585 1.26458 1.86726 1.45818 1.53635 1.32179 1.05164 1.21795 1.00321 0.95516 0.83404 1.23088 0.98481 0.83908 0.93984 0.89758 1.23067 1.02160 0.98340 0.94631 1.23001 1.02343 0.94436 0.97948 1.23134 0.92854 0.96212 0.84704 1.22728 0.92975 0.87394 0.99014 1.46098 1.27494 1.02574 1.58245 1.20099 1.16256 0.84580 1.21719 0.90215 1.25755 1.02758 0.90624 1.03196 1.70894 1.33573 1.33466 1.19614 0.83769 0.75474 0.75120 0.76197 1.22054 1.20945 1.22272 1.22752 0.91484 0.92305 0.95276 1.88362 1.66432 1.26859 1.43367 1.20325 0.99598 0.95955 0.95986 1.21529 0.94332 1.00383 0.93120 1.22102 1.01981 0.96300 0.99099 1.22764 0.93809 0.92322 0.97403 1.67707 1.10649 1.38452 1.02790 1.22467 0.95838 0.90839 0.93332 0.91061 0.91781 0.91186 0.75852 0.90941 0.90694 0.89984 0.90121 0.89575 0.90130 0.93389 0.93855 0.92918 0.92416 0.92254 0.84686 0.84742 0.82918 0.83311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.91 37.16 0.33 -0.73 16 2 C -0.07 -0.71 2.92 -92.92 -0.27 -0.98 16 3 H 0.11 1.05 7.93 -51.93 -0.41 0.64 16 4 C 0.52 6.75 7.03 -10.99 -0.08 6.68 16 5 O -0.54 -8.93 15.12 5.56 0.08 -8.85 16 6 N -0.72 -8.57 5.36 -60.30 -0.32 -8.89 16 7 C 0.11 1.37 5.23 -4.04 -0.02 1.35 16 8 C 0.06 0.74 3.62 -25.95 -0.09 0.65 16 9 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 10 C -0.14 -1.42 6.56 -24.62 -0.16 -1.58 16 11 C -0.14 -1.65 6.49 -24.94 -0.16 -1.82 16 12 C 0.07 1.22 1.56 -90.68 -0.14 1.08 16 13 C 0.11 2.10 8.24 -7.87 -0.06 2.04 16 14 N -0.62 -15.39 3.63 -184.82 -0.67 -16.06 16 15 C -0.30 -8.81 11.03 -15.06 -0.17 -8.97 16 16 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 17 C -0.02 -0.73 5.50 -17.43 -0.10 -0.83 16 18 N -0.93 -29.69 13.70 55.49 0.76 -28.93 16 19 Si 1.06 26.59 25.51 -169.99 -4.34 22.25 16 20 H -0.29 -7.04 6.97 56.52 0.39 -6.64 16 21 H -0.28 -6.47 5.64 56.52 0.32 -6.15 16 22 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 23 C 0.11 2.25 5.17 -7.75 -0.04 2.21 16 24 O -0.33 -5.53 10.69 -35.23 -0.38 -5.91 16 25 C -0.12 -1.33 4.40 -104.48 -0.46 -1.79 16 26 C -0.07 -0.71 9.81 -39.28 -0.39 -1.09 16 27 C -0.18 -1.67 10.11 -39.44 -0.40 -2.07 16 28 C 0.09 0.98 11.18 -17.55 -0.20 0.78 16 29 N -0.49 -6.26 10.36 -13.25 -0.14 -6.40 16 30 C 0.13 1.64 9.12 -17.55 -0.16 1.48 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.47 7.41 -51.92 -0.38 0.09 16 33 H 0.07 0.45 7.56 -51.93 -0.39 0.06 16 34 H 0.41 4.35 7.82 -40.82 -0.32 4.03 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.78 7.85 -51.93 -0.41 0.37 16 39 H 0.09 0.94 7.93 -51.93 -0.41 0.53 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.04 0.80 7.98 -51.93 -0.41 0.38 16 43 H 0.26 8.22 8.73 -40.82 -0.36 7.86 16 44 H 0.06 1.14 6.96 -51.93 -0.36 0.78 16 45 H 0.06 1.31 6.31 -51.93 -0.33 0.98 16 46 H 0.14 1.17 8.00 -52.48 -0.42 0.75 16 47 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 48 H 0.15 1.14 8.06 -52.48 -0.42 0.72 16 49 H 0.15 1.74 7.53 -52.49 -0.40 1.34 16 LS Contribution 394.17 15.07 5.94 5.94 Total: -1.00 -37.22 394.17 -9.34 -46.56 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -7.72 Total: 3.88 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -2.56 Total: -3.60 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: -0.37 Total: -60.28 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.29 Total: -14.76 kcal Atomic # 14 Polarization: 26.59 SS G_CDS: -4.34 Total: 22.25 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.22 -9.34 -46.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755056557.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.966 kcal (2) G-P(sol) polarization free energy of solvation -37.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds