Wall clock time and date at job start Wed Apr 1 2020 03:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47455 * 2 1 4 4 C 1.50697 * 109.47510 * 120.00561 * 2 1 3 5 5 O 1.21282 * 120.00369 * 119.99694 * 4 2 1 6 6 N 1.34774 * 119.99835 * 299.99724 * 4 2 1 7 7 C 1.46499 * 120.00028 * 179.97438 * 6 4 2 8 8 C 1.53004 * 109.47078 * 180.02562 * 7 6 4 9 9 H 1.09005 * 109.90023 * 59.48804 * 8 7 6 10 10 C 1.54482 * 109.82991 * 180.42192 * 8 7 6 11 11 C 1.55511 * 102.38328 * 140.88038 * 10 8 7 12 12 C 1.53882 * 100.75875 * 327.02683 * 11 10 8 13 13 C 1.52378 * 115.68036 * 263.23937 * 12 11 10 14 14 N 1.47279 * 87.70124 * 218.74709 * 13 12 11 15 15 C 1.36939 * 135.93248 * 206.14202 * 14 13 12 16 16 H 1.07996 * 119.99885 * 7.80140 * 15 14 13 17 17 C 1.38809 * 119.99898 * 187.79359 * 15 14 13 18 18 N 1.31620 * 120.00135 * 195.39501 * 17 15 14 19 19 Si 1.86805 * 119.99821 * 15.39783 * 17 15 14 20 20 H 1.48499 * 109.46906 * 269.99597 * 19 17 15 21 21 H 1.48495 * 109.47290 * 29.99769 * 19 17 15 22 22 H 1.48501 * 109.47005 * 149.99956 * 19 17 15 23 23 C 1.47267 * 88.13025 * 26.39877 * 14 13 12 24 24 O 1.42408 * 106.67050 * 34.97891 * 12 11 10 25 25 C 1.50705 * 109.46970 * 240.00710 * 2 1 3 26 26 C 1.38667 * 120.41988 * 119.72002 * 25 2 1 27 27 C 1.38631 * 118.42283 * 179.77925 * 26 25 2 28 28 C 1.38229 * 119.15440 * 0.51645 * 27 26 25 29 29 N 1.31853 * 120.76843 * 359.72174 * 28 27 26 30 30 C 1.31889 * 121.72508 * 0.02562 * 29 28 27 31 31 H 1.08993 * 109.47534 * 59.99738 * 1 2 3 32 32 H 1.09007 * 109.46883 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46770 * 299.99000 * 1 2 3 34 34 H 0.97002 * 120.00077 * 0.02562 * 6 4 2 35 35 H 1.08996 * 109.47205 * 60.00451 * 7 6 4 36 36 H 1.08998 * 109.47060 * 300.00184 * 7 6 4 37 37 H 1.09002 * 110.82269 * 259.10051 * 10 8 7 38 38 H 1.08997 * 110.82594 * 22.45746 * 10 8 7 39 39 H 1.09007 * 111.15374 * 209.15747 * 11 10 8 40 40 H 1.09000 * 111.16303 * 84.90295 * 11 10 8 41 41 H 1.09001 * 113.51811 * 104.04127 * 13 12 11 42 42 H 1.08997 * 113.51376 * 333.44771 * 13 12 11 43 43 H 0.97000 * 120.00082 * 354.91676 * 18 17 15 44 44 H 1.08996 * 113.51528 * 88.30762 * 23 14 13 45 45 H 1.09004 * 113.51680 * 218.89773 * 23 14 13 46 46 H 1.08004 * 120.79459 * 0.02562 * 26 25 2 47 47 H 1.07994 * 120.42353 * 180.25664 * 27 26 25 48 48 H 1.08005 * 119.61547 * 179.74682 * 28 27 26 49 49 H 1.08002 * 119.61753 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.7297 -1.6966 1.1190 6 7 1.7069 -0.2501 2.4545 7 6 2.1948 -0.9411 3.6506 8 6 1.6845 -0.2202 4.8999 9 1 0.5945 -0.2081 4.9021 10 6 2.2031 -0.9362 6.1667 11 6 2.5337 0.2544 7.1109 12 6 2.9840 1.3142 6.0901 13 6 4.4886 1.4314 5.8800 14 7 4.3028 2.8898 5.7914 15 6 4.9639 3.9316 5.1975 16 1 5.7848 3.7362 4.5235 17 6 4.5788 5.2388 5.4617 18 7 4.9915 6.2166 4.6832 19 14 3.4748 5.6102 6.9221 20 1 2.0533 5.5399 6.4985 21 1 3.7215 4.6138 7.9951 22 1 3.7721 6.9723 7.4335 23 6 3.0990 2.7386 6.6261 24 8 2.1865 1.1244 4.9256 25 6 2.0323 -0.7103 -1.2306 26 6 2.8252 -0.0430 -2.1519 27 6 3.2683 -0.7376 -3.2668 28 6 2.8985 -2.0599 -3.4273 29 7 2.1389 -2.6611 -2.5329 30 6 1.7034 -2.0330 -1.4581 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8901 34 1 1.1489 0.5383 2.5436 35 1 3.2848 -0.9415 3.6507 36 1 1.8311 -1.9686 3.6503 37 1 1.4282 -1.5695 6.5985 38 1 3.0975 -1.5181 5.9442 39 1 3.3422 0.0001 7.7965 40 1 1.6481 0.5831 7.6547 41 1 4.8345 0.9799 4.9502 42 1 5.0741 1.1195 6.7449 43 1 5.6232 6.0349 3.9698 44 1 3.3029 2.7854 7.6958 45 1 2.2760 3.3862 6.3238 46 1 3.0947 0.9922 -2.0025 47 1 3.8909 -0.2508 -4.0028 48 1 3.2361 -2.6069 -4.2952 49 1 1.0825 -2.5585 -0.7476 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755056557.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:46 Heat of formation + Delta-G solvation = -10.619275 kcal Electronic energy + Delta-G solvation = -30395.720502 eV Core-core repulsion = 26323.724714 eV Total energy + Delta-G solvation = -4071.995788 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.78983 -41.49380 -40.32041 -38.35259 -35.72091 -35.64846 -34.47561 -33.19835 -33.07806 -31.30653 -30.40189 -28.64726 -27.09751 -26.10286 -25.15437 -24.53323 -23.40798 -22.64930 -22.55059 -20.98514 -20.77668 -19.51164 -18.41569 -18.14523 -17.77532 -17.35432 -17.28902 -17.05330 -16.23630 -16.02630 -15.86245 -15.65129 -15.52608 -15.22100 -15.10647 -14.78313 -14.65949 -14.38609 -14.22822 -14.01618 -13.83476 -13.55179 -13.41643 -13.35322 -13.20202 -12.63402 -12.59451 -12.51164 -12.46072 -12.40397 -12.26286 -11.85401 -11.58466 -11.38176 -11.26453 -10.99151 -10.82329 -10.68666 -10.44379 -10.33418 -10.13525 -9.94209 -9.25251 -8.64101 -5.46263 0.12200 0.31015 1.38816 1.51414 1.55068 1.66785 2.11429 2.55076 2.65565 2.87494 3.04983 3.15544 3.36261 3.43968 3.60476 3.67217 3.69737 3.78488 3.86285 3.97531 3.99490 4.09589 4.16230 4.19484 4.35269 4.38978 4.48222 4.53470 4.58982 4.60153 4.64742 4.72731 4.75458 4.81734 4.84281 4.86730 4.90401 4.95460 5.04389 5.14125 5.15853 5.16347 5.20504 5.30054 5.33470 5.38036 5.73992 5.93501 6.25240 6.47090 6.68476 6.99283 7.16233 7.32801 8.27467 8.87516 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012328 B = 0.002751 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.685588 B =10175.236906 C =11590.114927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.065 4.065 3 H 0.116 0.884 4 C 0.515 3.485 5 O -0.579 6.579 6 N -0.712 5.712 7 C 0.114 3.886 8 C 0.062 3.938 9 H 0.114 0.886 10 C -0.135 4.135 11 C -0.128 4.128 12 C 0.089 3.911 13 C 0.100 3.900 14 N -0.654 5.654 15 C -0.292 4.292 16 H 0.038 0.962 17 C -0.085 4.085 18 N -0.968 5.968 19 Si 1.105 2.895 20 H -0.277 1.277 21 H -0.247 1.247 22 H -0.302 1.302 23 C 0.099 3.901 24 O -0.362 6.362 25 C -0.127 4.127 26 C -0.081 4.081 27 C -0.171 4.171 28 C 0.082 3.918 29 N -0.515 5.515 30 C 0.115 3.885 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.413 0.587 35 H 0.041 0.959 36 H 0.092 0.908 37 H 0.120 0.880 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.028 0.972 42 H 0.068 0.932 43 H 0.243 0.757 44 H 0.081 0.919 45 H 0.047 0.953 46 H 0.150 0.850 47 H 0.164 0.836 48 H 0.180 0.820 49 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.791 -18.166 -4.852 23.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.087 4.087 3 H 0.134 0.866 4 C 0.302 3.698 5 O -0.459 6.459 6 N -0.363 5.363 7 C -0.010 4.010 8 C 0.005 3.995 9 H 0.131 0.869 10 C -0.173 4.173 11 C -0.166 4.166 12 C 0.048 3.952 13 C -0.025 4.025 14 N -0.382 5.382 15 C -0.420 4.420 16 H 0.056 0.944 17 C -0.277 4.277 18 N -0.614 5.614 19 Si 0.929 3.071 20 H -0.204 1.204 21 H -0.171 1.171 22 H -0.230 1.230 23 C -0.025 4.025 24 O -0.281 6.281 25 C -0.129 4.129 26 C -0.107 4.107 27 C -0.191 4.191 28 C -0.074 4.074 29 N -0.224 5.224 30 C -0.041 4.041 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.250 0.750 35 H 0.060 0.940 36 H 0.110 0.890 37 H 0.138 0.862 38 H 0.099 0.901 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.046 0.954 42 H 0.086 0.914 43 H 0.053 0.947 44 H 0.099 0.901 45 H 0.065 0.935 46 H 0.168 0.832 47 H 0.182 0.818 48 H 0.197 0.803 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.236 -18.231 -4.552 23.574 hybrid contribution 2.005 0.388 -1.099 2.319 sum -12.231 -17.842 -5.651 22.358 Atomic orbital electron populations 1.21807 0.89434 1.03479 1.04551 1.20268 0.99690 1.00168 0.88546 0.86563 1.20869 0.79480 0.84103 0.85391 1.90700 1.39495 1.28383 1.87333 1.45856 1.53209 1.32206 1.05057 1.21809 0.98558 0.96676 0.83919 1.23370 0.99852 0.81866 0.94435 0.86868 1.23112 1.03396 0.97874 0.92939 1.23015 1.03715 0.92863 0.97042 1.22814 0.90538 0.95511 0.86303 1.23009 0.96310 0.84280 0.98924 1.46180 1.29126 1.03570 1.59312 1.19905 1.14821 0.86516 1.20713 0.94412 1.27213 1.04623 0.90621 1.05233 1.71018 1.35122 1.34595 1.20641 0.83298 0.74481 0.75403 0.73884 1.20370 1.17101 1.22990 1.23030 0.89053 0.94664 0.95769 1.88335 1.66226 1.29905 1.43683 1.20482 0.99964 0.95868 0.96631 1.21867 0.94157 1.01313 0.93382 1.22454 1.01423 0.95988 0.99193 1.23282 0.93278 0.93098 0.97729 1.67683 1.11774 1.39431 1.03526 1.22494 0.96618 0.91425 0.93611 0.89966 0.91764 0.89852 0.75049 0.94035 0.89012 0.86216 0.90145 0.87985 0.87824 0.95391 0.91410 0.94740 0.90115 0.93466 0.83186 0.81796 0.80295 0.83682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.91 71.98 0.64 -1.24 16 2 C -0.06 -1.31 2.92 -12.29 -0.04 -1.34 16 3 H 0.12 2.18 7.93 -2.39 -0.02 2.16 16 4 C 0.51 13.48 7.03 87.66 0.62 14.10 16 5 O -0.58 -19.77 15.12 -3.04 -0.05 -19.82 16 6 N -0.71 -16.53 5.36 -463.07 -2.48 -19.01 16 7 C 0.11 2.61 5.23 86.38 0.45 3.06 16 8 C 0.06 1.24 3.62 31.10 0.11 1.36 16 9 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 10 C -0.14 -2.03 6.56 31.96 0.21 -1.82 16 11 C -0.13 -2.41 6.49 31.76 0.21 -2.20 16 12 C 0.09 2.80 1.56 -10.82 -0.02 2.79 16 13 C 0.10 3.91 8.24 83.47 0.69 4.60 16 14 N -0.65 -32.54 3.63 -740.06 -2.69 -35.22 16 15 C -0.29 -17.73 11.03 84.03 0.93 -16.80 16 16 H 0.04 2.52 8.06 -2.91 -0.02 2.50 16 17 C -0.09 -5.24 5.50 84.86 0.47 -4.77 16 18 N -0.97 -64.12 13.70 21.65 0.30 -63.82 16 19 Si 1.11 53.23 25.51 68.60 1.75 54.98 16 20 H -0.28 -12.54 6.97 99.48 0.69 -11.84 16 21 H -0.25 -10.27 5.64 99.48 0.56 -9.70 16 22 H -0.30 -14.75 7.11 99.48 0.71 -14.05 16 23 C 0.10 3.89 5.17 83.56 0.43 4.32 16 24 O -0.36 -11.34 10.69 -148.98 -1.59 -12.94 16 25 C -0.13 -2.92 4.40 -19.77 -0.09 -3.01 16 26 C -0.08 -1.66 9.81 22.47 0.22 -1.44 16 27 C -0.17 -3.07 10.11 22.36 0.23 -2.84 16 28 C 0.08 1.67 11.18 84.69 0.95 2.62 16 29 N -0.52 -13.39 10.36 -195.83 -2.03 -15.42 16 30 C 0.12 2.93 9.12 84.67 0.77 3.70 16 31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.06 0.90 7.41 -2.38 -0.02 0.88 16 33 H 0.08 0.93 7.56 -2.39 -0.02 0.91 16 34 H 0.41 8.35 7.82 -92.71 -0.72 7.63 16 35 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 1.25 7.85 -2.39 -0.02 1.23 16 39 H 0.10 1.66 7.93 -2.38 -0.02 1.64 16 40 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.07 2.33 7.98 -2.39 -0.02 2.31 16 43 H 0.24 16.30 8.73 -92.71 -0.81 15.49 16 44 H 0.08 2.82 6.96 -2.39 -0.02 2.80 16 45 H 0.05 1.97 6.31 -2.38 -0.02 1.95 16 46 H 0.15 2.48 8.00 -2.91 -0.02 2.46 16 47 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 48 H 0.18 2.44 8.06 -2.91 -0.02 2.41 16 49 H 0.15 3.57 7.53 -2.91 -0.02 3.55 16 Total: -1.00 -86.75 394.17 0.02 -86.73 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.03 Total: 23.46 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 6.78 Total: 1.05 kcal Atomic # 7 Polarization: -126.57 SS G_CDS: -6.90 Total: -133.47 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -1.64 Total: -32.75 kcal Atomic # 14 Polarization: 53.23 SS G_CDS: 1.75 Total: 54.98 kcal Total: -86.75 0.02 -86.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755056557.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.115 kcal (2) G-P(sol) polarization free energy of solvation -86.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds