Wall clock time and date at job start Wed Apr 1 2020 03:38:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09009 * 109.47195 * 2 1
4 4 C 1.50703 * 109.47062 * 240.00556 * 2 1 3
5 5 O 1.21275 * 120.00106 * 239.99906 * 4 2 1
6 6 N 1.34779 * 119.99925 * 59.99602 * 4 2 1
7 7 C 1.46497 * 120.00149 * 179.97438 * 6 4 2
8 8 C 1.52996 * 109.47340 * 180.02562 * 7 6 4
9 9 H 1.09000 * 110.52387 * 307.79546 * 8 7 6
10 10 C 1.55061 * 110.58676 * 185.00022 * 8 7 6
11 11 C 1.55023 * 102.13348 * 204.93575 * 10 8 7
12 12 C 1.53324 * 103.78694 * 20.86322 * 11 10 8
13 13 C 1.52644 * 115.56381 * 133.64309 * 12 11 10
14 14 N 1.47229 * 87.78111 * 90.04653 * 13 12 11
15 15 C 1.36929 * 135.96928 * 206.41470 * 14 13 12
16 16 H 1.08006 * 119.99870 * 7.80348 * 15 14 13
17 17 C 1.38816 * 120.00238 * 187.80548 * 15 14 13
18 18 N 1.31613 * 119.99924 * 195.33338 * 17 15 14
19 19 Si 1.86798 * 119.99528 * 15.32917 * 17 15 14
20 20 H 1.48501 * 109.47162 * 269.99583 * 19 17 15
21 21 H 1.48507 * 109.46522 * 150.00004 * 19 17 15
22 22 H 1.48498 * 109.47295 * 30.00249 * 19 17 15
23 23 C 1.47221 * 88.06476 * 26.66859 * 14 13 12
24 24 O 1.42845 * 108.32768 * 1.60407 * 12 11 10
25 25 C 1.50693 * 109.47438 * 120.00463 * 2 1 3
26 26 C 1.38679 * 120.41993 * 240.00040 * 25 2 1
27 27 C 1.38626 * 118.41829 * 180.02562 * 26 25 2
28 28 C 1.38228 * 119.16320 * 359.97438 * 27 26 25
29 29 N 1.31853 * 120.76249 * 0.02562 * 28 27 26
30 30 C 1.31887 * 121.72581 * 359.70338 * 29 28 27
31 31 H 1.08996 * 109.46665 * 299.99468 * 1 2 3
32 32 H 1.08996 * 109.47235 * 59.99466 * 1 2 3
33 33 H 1.08997 * 109.47097 * 179.97438 * 1 2 3
34 34 H 0.97007 * 120.00114 * 0.02562 * 6 4 2
35 35 H 1.08997 * 109.46946 * 60.00254 * 7 6 4
36 36 H 1.08999 * 109.47092 * 300.00525 * 7 6 4
37 37 H 1.09000 * 110.87112 * 86.77724 * 10 8 7
38 38 H 1.08998 * 111.04731 * 323.17844 * 10 8 7
39 39 H 1.09001 * 110.56238 * 262.28898 * 11 10 8
40 40 H 1.08995 * 110.69137 * 139.49727 * 11 10 8
41 41 H 1.09001 * 113.50036 * 335.32317 * 13 12 11
42 42 H 1.09001 * 113.56148 * 204.78134 * 13 12 11
43 43 H 0.97000 * 120.00254 * 354.90242 * 18 17 15
44 44 H 1.08998 * 113.49938 * 88.05938 * 23 14 13
45 45 H 1.08996 * 113.50607 * 218.60684 * 23 14 13
46 46 H 1.07995 * 120.78275 * 359.97438 * 26 25 2
47 47 H 1.08003 * 120.41363 * 179.97438 * 27 26 25
48 48 H 1.08000 * 119.61714 * 180.02562 * 28 27 26
49 49 H 1.08003 * 119.61314 * 180.31036 * 30 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0324 -0.7103 -1.2306
5 8 2.7296 -1.6963 -1.1194
6 7 1.7067 -0.2497 -2.4546
7 6 2.1954 -0.9399 -3.6509
8 6 1.6858 -0.2183 -4.9000
9 1 0.6048 -0.0869 -4.8511
10 6 2.0829 -0.9979 -6.1802
11 6 2.0911 0.1207 -7.2535
12 6 2.2420 1.4096 -6.4369
13 6 3.2805 2.4005 -6.9561
14 7 2.2113 3.0098 -7.7643
15 6 2.1441 3.7217 -8.9320
16 1 3.0264 3.8408 -9.5434
17 6 0.9419 4.2904 -9.3300
18 7 0.7896 4.7077 -10.5689
19 14 -0.4596 4.4630 -8.1072
20 1 -1.3074 3.2446 -8.1507
21 1 -1.2801 5.6498 -8.4591
22 1 0.0944 4.6321 -6.7399
23 6 1.2467 2.5240 -6.7638
24 8 2.3494 1.0569 -5.0568
25 6 2.0324 -0.7105 1.2303
26 6 2.8302 -0.0450 2.1489
27 6 3.2697 -0.7386 3.2658
28 6 2.9004 -2.0610 3.4259
29 7 2.1402 -2.6619 2.5316
30 6 1.6996 -2.0317 1.4601
31 1 -0.3632 0.5137 0.8900
32 1 -0.3633 0.5139 -0.8899
33 1 -0.3633 -1.0276 -0.0005
34 1 1.1492 0.5392 -2.5436
35 1 1.8325 -1.9676 -3.6511
36 1 3.2854 -0.9394 -3.6507
37 1 1.3394 -1.7586 -6.4179
38 1 3.0722 -1.4434 -6.0761
39 1 1.1525 0.1264 -7.8077
40 1 2.9346 -0.0033 -7.9325
41 1 4.0650 1.9351 -7.5530
42 1 3.6740 3.0632 -6.1853
43 1 1.5397 4.6863 -11.1836
44 1 1.0874 3.2198 -5.9400
45 1 0.3146 2.1629 -7.1981
46 1 3.1033 0.9888 1.9972
47 1 3.8929 -0.2519 4.0015
48 1 3.2383 -2.6083 4.2935
49 1 1.0747 -2.5557 0.7520
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001755056558.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:38:52
Heat of formation + Delta-G solvation = 14.455505 kcal
Electronic energy + Delta-G solvation = -29851.328545 eV
Core-core repulsion = 25780.420081 eV
Total energy + Delta-G solvation = -4070.908464 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.19 seconds
Orbital eigenvalues (eV)
-40.95901 -40.28919 -39.48299 -37.03861 -34.97144 -34.76399 -32.47144 -32.36920
-32.05415 -30.36236 -29.24671 -27.17404 -25.50255 -25.37970 -24.01236 -23.82999
-22.45088 -21.58173 -21.31538 -20.20177 -19.16526 -17.64068 -17.51092 -17.44582
-16.84126 -16.44140 -16.24187 -15.78087 -15.35952 -15.11097 -14.72368 -14.54759
-14.26389 -14.08885 -13.83548 -13.75853 -13.41138 -13.37058 -13.27076 -13.10713
-12.89148 -12.68860 -12.38622 -12.02210 -11.90415 -11.75981 -11.63917 -11.50801
-11.23051 -11.06266 -10.74492 -10.52516 -10.34501 -10.22152 -9.93042 -9.88488
-9.72174 -9.33883 -9.29423 -9.26213 -8.96892 -8.75877 -7.25246 -6.36715
-3.28946 0.79953 0.99476 2.38471 2.88480 3.35091 3.43804 3.56034
3.58007 3.77084 4.00093 4.27821 4.34492 4.53761 4.54232 4.58036
4.59164 4.65779 4.71917 4.74965 4.83459 4.85521 4.90222 4.93658
5.09483 5.16451 5.24142 5.32364 5.34424 5.39847 5.45862 5.48622
5.52375 5.63128 5.76548 5.78328 5.86112 5.93550 6.12966 6.17745
6.20639 6.22045 6.25866 6.29790 6.33874 6.39157 6.52051 7.03197
7.24567 7.26650 7.70698 7.96688 8.18146 8.91336 9.43965 10.29976
11.13422
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.021371 B = 0.002074 C = 0.001999
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1309.894527 B =13499.499950 C =14006.716655
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.068 4.068
3 H 0.109 0.891
4 C 0.517 3.483
5 O -0.535 6.535
6 N -0.721 5.721
7 C 0.129 3.871
8 C 0.062 3.938
9 H 0.077 0.923
10 C -0.146 4.146
11 C -0.112 4.112
12 C 0.062 3.938
13 C 0.128 3.872
14 N -0.615 5.615
15 C -0.303 4.303
16 H 0.083 0.917
17 C -0.023 4.023
18 N -0.929 5.929
19 Si 1.061 2.939
20 H -0.294 1.294
21 H -0.294 1.294
22 H -0.281 1.281
23 C 0.092 3.908
24 O -0.356 6.356
25 C -0.118 4.118
26 C -0.068 4.068
27 C -0.176 4.176
28 C 0.095 3.905
29 N -0.486 5.486
30 C 0.133 3.867
31 H 0.071 0.929
32 H 0.070 0.930
33 H 0.065 0.935
34 H 0.405 0.595
35 H 0.081 0.919
36 H 0.077 0.923
37 H 0.081 0.919
38 H 0.079 0.921
39 H 0.081 0.919
40 H 0.082 0.918
41 H 0.050 0.950
42 H 0.043 0.957
43 H 0.262 0.738
44 H 0.051 0.949
45 H 0.053 0.947
46 H 0.134 0.866
47 H 0.135 0.865
48 H 0.154 0.846
49 H 0.150 0.850
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.340 -12.473 25.150 28.075
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.090 4.090
3 H 0.127 0.873
4 C 0.303 3.697
5 O -0.411 6.411
6 N -0.373 5.373
7 C 0.005 3.995
8 C 0.003 3.997
9 H 0.094 0.906
10 C -0.184 4.184
11 C -0.150 4.150
12 C 0.021 3.979
13 C 0.002 3.998
14 N -0.345 5.345
15 C -0.429 4.429
16 H 0.101 0.899
17 C -0.222 4.222
18 N -0.571 5.571
19 Si 0.892 3.108
20 H -0.221 1.221
21 H -0.222 1.222
22 H -0.207 1.207
23 C -0.034 4.034
24 O -0.274 6.274
25 C -0.120 4.120
26 C -0.094 4.094
27 C -0.195 4.195
28 C -0.062 4.062
29 N -0.195 5.195
30 C -0.024 4.024
31 H 0.090 0.910
32 H 0.089 0.911
33 H 0.084 0.916
34 H 0.240 0.760
35 H 0.099 0.901
36 H 0.095 0.905
37 H 0.099 0.901
38 H 0.097 0.903
39 H 0.099 0.901
40 H 0.100 0.900
41 H 0.068 0.932
42 H 0.061 0.939
43 H 0.072 0.928
44 H 0.069 0.931
45 H 0.071 0.929
46 H 0.152 0.848
47 H 0.152 0.848
48 H 0.171 0.829
49 H 0.168 0.832
Dipole moment (debyes) X Y Z Total
from point charges -0.844 -13.329 25.424 28.719
hybrid contribution 1.632 1.008 -0.533 1.991
sum 0.788 -12.321 24.891 27.785
Atomic orbital electron populations
1.21826 0.91520 1.03302 1.03407 1.20233 0.98014 1.00432 0.90326
0.87302 1.20393 0.80278 0.84662 0.84395 1.90739 1.37480 1.26243
1.86685 1.45929 1.53762 1.32292 1.05331 1.21443 1.00444 0.95517
0.82077 1.23365 0.97082 0.84996 0.94208 0.90552 1.23141 1.02714
0.98362 0.94192 1.22373 1.04003 0.91342 0.97276 1.23643 0.99835
0.94289 0.80138 1.22391 0.92412 0.92190 0.92828 1.45924 1.02121
1.65176 1.21311 1.20093 0.99191 1.29841 0.93790 0.89904 1.25779
0.99365 0.97412 0.99654 1.70901 1.32421 1.50884 1.02918 0.83798
0.75555 0.76300 0.75118 1.22147 1.22171 1.20732 1.23119 0.94539
0.93280 0.92449 1.88768 1.76657 1.35801 1.26185 1.20315 0.99663
0.96004 0.96048 1.21486 0.94529 1.00220 0.93197 1.22099 1.02059
0.96328 0.99054 1.22786 0.93691 0.92314 0.97361 1.67720 1.10496
1.38455 1.02807 1.22497 0.95728 0.90825 0.93346 0.91012 0.91136
0.91642 0.75966 0.90078 0.90473 0.90077 0.90260 0.90065 0.89977
0.93157 0.93941 0.92782 0.93122 0.92943 0.84805 0.84752 0.82869
0.83248
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.79 8.90 37.16 0.33 -0.46 16
2 C -0.07 -0.51 2.92 -92.92 -0.27 -0.78 16
3 H 0.11 0.65 7.93 -51.92 -0.41 0.23 16
4 C 0.52 5.38 7.03 -10.98 -0.08 5.31 16
5 O -0.54 -7.63 15.14 5.56 0.08 -7.54 16
6 N -0.72 -6.76 5.45 -60.30 -0.33 -7.09 16
7 C 0.13 1.32 5.41 -4.05 -0.02 1.30 16
8 C 0.06 0.69 3.38 -25.64 -0.09 0.61 16
9 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16
10 C -0.15 -1.60 6.60 -24.57 -0.16 -1.76 16
11 C -0.11 -1.66 6.46 -25.49 -0.16 -1.82 16
12 C 0.06 1.06 1.66 -90.66 -0.15 0.91 16
13 C 0.13 2.56 8.20 -8.03 -0.07 2.49 16
14 N -0.62 -14.88 3.58 -184.60 -0.66 -15.54 16
15 C -0.30 -8.57 11.03 -15.06 -0.17 -8.74 16
16 H 0.08 2.47 8.06 -52.48 -0.42 2.04 16
17 C -0.02 -0.66 5.50 -17.43 -0.10 -0.76 16
18 N -0.93 -28.85 13.70 55.49 0.76 -28.09 16
19 Si 1.06 26.07 25.51 -169.99 -4.34 21.73 16
20 H -0.29 -6.85 6.97 56.52 0.39 -6.46 16
21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16
22 H -0.28 -6.45 5.65 56.52 0.32 -6.13 16
23 C 0.09 1.91 5.12 -7.88 -0.04 1.87 16
24 O -0.36 -5.33 11.02 -35.23 -0.39 -5.72 16
25 C -0.12 -1.07 4.40 -104.48 -0.46 -1.53 16
26 C -0.07 -0.54 9.81 -39.28 -0.39 -0.92 16
27 C -0.18 -1.30 10.11 -39.44 -0.40 -1.70 16
28 C 0.10 0.83 11.18 -17.55 -0.20 0.63 16
29 N -0.49 -5.48 10.36 -13.25 -0.14 -5.61 16
30 C 0.13 1.41 9.13 -17.55 -0.16 1.25 16
31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16
32 H 0.07 0.32 7.56 -51.93 -0.39 -0.07 16
33 H 0.06 0.38 7.40 -51.93 -0.38 0.00 16
34 H 0.41 3.15 7.89 -40.82 -0.32 2.83 16
35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16
36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16
37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16
38 H 0.08 0.82 8.05 -51.93 -0.42 0.40 16
39 H 0.08 1.26 7.82 -51.93 -0.41 0.85 16
40 H 0.08 1.23 7.81 -51.93 -0.41 0.83 16
41 H 0.05 0.96 7.91 -51.93 -0.41 0.55 16
42 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16
43 H 0.26 8.03 8.73 -40.82 -0.36 7.67 16
44 H 0.05 1.06 6.98 -51.93 -0.36 0.70 16
45 H 0.05 1.10 6.08 -51.93 -0.32 0.78 16
46 H 0.13 0.74 8.00 -52.49 -0.42 0.32 16
47 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16
48 H 0.15 0.91 8.06 -52.49 -0.42 0.48 16
49 H 0.15 1.51 7.53 -52.48 -0.40 1.11 16
LS Contribution 394.09 15.07 5.94 5.94
Total: -1.00 -35.42 394.09 -9.33 -44.75
By element:
Atomic # 1 Polarization: 8.97 SS G_CDS: -7.69 Total: 1.28 kcal
Atomic # 6 Polarization: -1.54 SS G_CDS: -2.57 Total: -4.11 kcal
Atomic # 7 Polarization: -55.96 SS G_CDS: -0.37 Total: -56.33 kcal
Atomic # 8 Polarization: -12.95 SS G_CDS: -0.30 Total: -13.26 kcal
Atomic # 14 Polarization: 26.07 SS G_CDS: -4.34 Total: 21.73 kcal
Total LS contribution 5.94 Total: 5.94 kcal
Total: -35.42 -9.33 -44.75 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001755056558.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 59.207 kcal
(2) G-P(sol) polarization free energy of solvation -35.417 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.790 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.751 kcal
(6) G-S(sol) free energy of system = (1) + (5) 14.456 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.19 seconds