Wall clock time and date at job start Wed Apr 1 2020 03:38:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09009 * 109.47195 * 2 1
4 4 C 1.50703 * 109.47062 * 240.00556 * 2 1 3
5 5 O 1.21275 * 120.00106 * 239.99906 * 4 2 1
6 6 N 1.34779 * 119.99925 * 59.99602 * 4 2 1
7 7 C 1.46497 * 120.00149 * 179.97438 * 6 4 2
8 8 C 1.52996 * 109.47340 * 180.02562 * 7 6 4
9 9 H 1.09000 * 110.52387 * 307.79546 * 8 7 6
10 10 C 1.55061 * 110.58676 * 185.00022 * 8 7 6
11 11 C 1.55023 * 102.13348 * 204.93575 * 10 8 7
12 12 C 1.53324 * 103.78694 * 20.86322 * 11 10 8
13 13 C 1.52644 * 115.56381 * 133.64309 * 12 11 10
14 14 N 1.47229 * 87.78111 * 90.04653 * 13 12 11
15 15 C 1.36929 * 135.96928 * 206.41470 * 14 13 12
16 16 H 1.08006 * 119.99870 * 7.80348 * 15 14 13
17 17 C 1.38816 * 120.00238 * 187.80548 * 15 14 13
18 18 N 1.31613 * 119.99924 * 195.33338 * 17 15 14
19 19 Si 1.86798 * 119.99528 * 15.32917 * 17 15 14
20 20 H 1.48501 * 109.47162 * 269.99583 * 19 17 15
21 21 H 1.48507 * 109.46522 * 150.00004 * 19 17 15
22 22 H 1.48498 * 109.47295 * 30.00249 * 19 17 15
23 23 C 1.47221 * 88.06476 * 26.66859 * 14 13 12
24 24 O 1.42845 * 108.32768 * 1.60407 * 12 11 10
25 25 C 1.50693 * 109.47438 * 120.00463 * 2 1 3
26 26 C 1.38679 * 120.41993 * 240.00040 * 25 2 1
27 27 C 1.38626 * 118.41829 * 180.02562 * 26 25 2
28 28 C 1.38228 * 119.16320 * 359.97438 * 27 26 25
29 29 N 1.31853 * 120.76249 * 0.02562 * 28 27 26
30 30 C 1.31887 * 121.72581 * 359.70338 * 29 28 27
31 31 H 1.08996 * 109.46665 * 299.99468 * 1 2 3
32 32 H 1.08996 * 109.47235 * 59.99466 * 1 2 3
33 33 H 1.08997 * 109.47097 * 179.97438 * 1 2 3
34 34 H 0.97007 * 120.00114 * 0.02562 * 6 4 2
35 35 H 1.08997 * 109.46946 * 60.00254 * 7 6 4
36 36 H 1.08999 * 109.47092 * 300.00525 * 7 6 4
37 37 H 1.09000 * 110.87112 * 86.77724 * 10 8 7
38 38 H 1.08998 * 111.04731 * 323.17844 * 10 8 7
39 39 H 1.09001 * 110.56238 * 262.28898 * 11 10 8
40 40 H 1.08995 * 110.69137 * 139.49727 * 11 10 8
41 41 H 1.09001 * 113.50036 * 335.32317 * 13 12 11
42 42 H 1.09001 * 113.56148 * 204.78134 * 13 12 11
43 43 H 0.97000 * 120.00254 * 354.90242 * 18 17 15
44 44 H 1.08998 * 113.49938 * 88.05938 * 23 14 13
45 45 H 1.08996 * 113.50607 * 218.60684 * 23 14 13
46 46 H 1.07995 * 120.78275 * 359.97438 * 26 25 2
47 47 H 1.08003 * 120.41363 * 179.97438 * 27 26 25
48 48 H 1.08000 * 119.61714 * 180.02562 * 28 27 26
49 49 H 1.08003 * 119.61314 * 180.31036 * 30 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0324 -0.7103 -1.2306
5 8 2.7296 -1.6963 -1.1194
6 7 1.7067 -0.2497 -2.4546
7 6 2.1954 -0.9399 -3.6509
8 6 1.6858 -0.2183 -4.9000
9 1 0.6048 -0.0869 -4.8511
10 6 2.0829 -0.9979 -6.1802
11 6 2.0911 0.1207 -7.2535
12 6 2.2420 1.4096 -6.4369
13 6 3.2805 2.4005 -6.9561
14 7 2.2113 3.0098 -7.7643
15 6 2.1441 3.7217 -8.9320
16 1 3.0264 3.8408 -9.5434
17 6 0.9419 4.2904 -9.3300
18 7 0.7896 4.7077 -10.5689
19 14 -0.4596 4.4630 -8.1072
20 1 -1.3074 3.2446 -8.1507
21 1 -1.2801 5.6498 -8.4591
22 1 0.0944 4.6321 -6.7399
23 6 1.2467 2.5240 -6.7638
24 8 2.3494 1.0569 -5.0568
25 6 2.0324 -0.7105 1.2303
26 6 2.8302 -0.0450 2.1489
27 6 3.2697 -0.7386 3.2658
28 6 2.9004 -2.0610 3.4259
29 7 2.1402 -2.6619 2.5316
30 6 1.6996 -2.0317 1.4601
31 1 -0.3632 0.5137 0.8900
32 1 -0.3633 0.5139 -0.8899
33 1 -0.3633 -1.0276 -0.0005
34 1 1.1492 0.5392 -2.5436
35 1 1.8325 -1.9676 -3.6511
36 1 3.2854 -0.9394 -3.6507
37 1 1.3394 -1.7586 -6.4179
38 1 3.0722 -1.4434 -6.0761
39 1 1.1525 0.1264 -7.8077
40 1 2.9346 -0.0033 -7.9325
41 1 4.0650 1.9351 -7.5530
42 1 3.6740 3.0632 -6.1853
43 1 1.5397 4.6863 -11.1836
44 1 1.0874 3.2198 -5.9400
45 1 0.3146 2.1629 -7.1981
46 1 3.1033 0.9888 1.9972
47 1 3.8929 -0.2519 4.0015
48 1 3.2383 -2.6083 4.2935
49 1 1.0747 -2.5557 0.7520
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001755056558.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:38:51
Heat of formation + Delta-G solvation = -11.305230 kcal
Electronic energy + Delta-G solvation = -29852.445614 eV
Core-core repulsion = 25780.420081 eV
Total energy + Delta-G solvation = -4072.025533 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.30 seconds
Orbital eigenvalues (eV)
-41.73943 -41.48025 -40.28881 -38.41373 -35.73505 -35.61213 -34.47400 -33.15807
-33.01806 -31.22582 -30.32681 -28.69693 -27.13511 -26.04807 -25.05125 -24.47433
-23.40642 -22.96160 -22.35765 -20.97747 -20.72254 -19.47890 -18.35315 -18.10219
-17.78071 -17.40769 -17.19594 -16.99390 -16.30691 -16.19364 -15.90437 -15.73866
-15.38104 -15.21016 -14.94155 -14.69123 -14.62770 -14.38766 -14.24766 -13.94582
-13.69449 -13.52983 -13.42091 -13.22130 -13.17543 -12.68449 -12.60164 -12.46188
-12.44226 -12.32775 -12.19773 -12.03870 -11.75787 -11.45825 -11.37579 -10.93706
-10.87650 -10.62845 -10.37727 -10.36743 -10.10498 -9.88976 -9.28450 -8.64567
-5.49348 0.17638 0.38075 1.38653 1.51555 1.61806 1.66572 2.15351
2.52519 2.57575 2.91971 3.07113 3.16902 3.41864 3.42376 3.60154
3.63402 3.67714 3.77465 3.93251 4.02035 4.06366 4.11972 4.15114
4.23265 4.40408 4.41148 4.46662 4.50361 4.62920 4.63707 4.66027
4.69959 4.80218 4.82945 4.84645 4.90261 4.92403 4.94207 4.99902
5.11290 5.15336 5.20546 5.22813 5.24500 5.35624 5.41560 5.80179
5.92730 6.02532 6.52700 6.67166 7.05788 7.22408 7.29653 8.23940
8.87186
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.021371 B = 0.002074 C = 0.001999
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1309.894527 B =13499.499950 C =14006.716655
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.061 4.061
3 H 0.131 0.869
4 C 0.516 3.484
5 O -0.578 6.578
6 N -0.714 5.714
7 C 0.134 3.866
8 C 0.062 3.938
9 H 0.096 0.904
10 C -0.135 4.135
11 C -0.116 4.116
12 C 0.088 3.912
13 C 0.121 3.879
14 N -0.644 5.644
15 C -0.291 4.291
16 H 0.050 0.950
17 C -0.081 4.081
18 N -0.965 5.965
19 Si 1.100 2.900
20 H -0.272 1.272
21 H -0.302 1.302
22 H -0.256 1.256
23 C 0.086 3.914
24 O -0.361 6.361
25 C -0.126 4.126
26 C -0.076 4.076
27 C -0.172 4.172
28 C 0.079 3.921
29 N -0.520 5.520
30 C 0.111 3.889
31 H 0.081 0.919
32 H 0.084 0.916
33 H 0.057 0.943
34 H 0.415 0.585
35 H 0.093 0.907
36 H 0.061 0.939
37 H 0.108 0.892
38 H 0.088 0.912
39 H 0.075 0.925
40 H 0.075 0.925
41 H 0.053 0.947
42 H 0.047 0.953
43 H 0.247 0.753
44 H 0.056 0.944
45 H 0.053 0.947
46 H 0.160 0.840
47 H 0.165 0.835
48 H 0.175 0.825
49 H 0.141 0.859
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.415 -13.023 27.971 30.857
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.083 4.083
3 H 0.149 0.851
4 C 0.304 3.696
5 O -0.458 6.458
6 N -0.366 5.366
7 C 0.011 3.989
8 C 0.005 3.995
9 H 0.113 0.887
10 C -0.173 4.173
11 C -0.154 4.154
12 C 0.047 3.953
13 C -0.004 4.004
14 N -0.374 5.374
15 C -0.418 4.418
16 H 0.068 0.932
17 C -0.274 4.274
18 N -0.609 5.609
19 Si 0.925 3.075
20 H -0.198 1.198
21 H -0.230 1.230
22 H -0.181 1.181
23 C -0.039 4.039
24 O -0.279 6.279
25 C -0.128 4.128
26 C -0.101 4.101
27 C -0.191 4.191
28 C -0.077 4.077
29 N -0.229 5.229
30 C -0.046 4.046
31 H 0.100 0.900
32 H 0.103 0.897
33 H 0.076 0.924
34 H 0.252 0.748
35 H 0.111 0.889
36 H 0.079 0.921
37 H 0.126 0.874
38 H 0.106 0.894
39 H 0.093 0.907
40 H 0.094 0.906
41 H 0.071 0.929
42 H 0.065 0.935
43 H 0.056 0.944
44 H 0.074 0.926
45 H 0.071 0.929
46 H 0.178 0.822
47 H 0.183 0.817
48 H 0.192 0.808
49 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges -1.587 -13.899 28.276 31.547
hybrid contribution 2.025 1.131 -1.349 2.683
sum 0.438 -12.768 26.927 29.804
Atomic orbital electron populations
1.21832 0.89989 1.03233 1.04638 1.20271 0.99161 1.00705 0.88137
0.85144 1.20884 0.79417 0.84085 0.85262 1.90725 1.39536 1.28235
1.87287 1.45888 1.53438 1.32412 1.04889 1.21340 0.99525 0.96084
0.81992 1.23581 0.97837 0.83378 0.94712 0.88672 1.23137 1.04285
0.97598 0.92244 1.22390 1.03418 0.91620 0.97970 1.23115 0.96281
0.94104 0.81840 1.22571 0.92584 0.92824 0.92465 1.45907 1.05275
1.64877 1.21371 1.19919 0.97921 1.28902 0.95078 0.93206 1.27100
1.02409 0.97543 1.00321 1.71012 1.32104 1.53749 1.04082 0.83336
0.73220 0.76751 0.74207 1.19789 1.23017 1.18086 1.23297 0.94734
0.94496 0.91363 1.88755 1.77124 1.37748 1.24321 1.20499 0.99852
0.95590 0.96907 1.21893 0.93831 1.01474 0.92941 1.22461 1.01468
0.95771 0.99392 1.23251 0.93463 0.93402 0.97618 1.67662 1.11826
1.39729 1.03732 1.22502 0.96675 0.91823 0.93561 0.89967 0.89667
0.92422 0.74777 0.88894 0.92063 0.87356 0.89386 0.90662 0.90613
0.92869 0.93523 0.94370 0.92634 0.92850 0.82223 0.81745 0.80794
0.84112
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.20 8.90 71.98 0.64 -0.56 16
2 C -0.06 -0.78 2.92 -12.29 -0.04 -0.81 16
3 H 0.13 1.09 7.93 -2.38 -0.02 1.07 16
4 C 0.52 9.80 7.03 87.66 0.62 10.42 16
5 O -0.58 -16.08 15.14 -3.01 -0.05 -16.12 16
6 N -0.71 -11.38 5.45 -463.08 -2.52 -13.90 16
7 C 0.13 2.38 5.41 86.38 0.47 2.84 16
8 C 0.06 1.17 3.38 31.30 0.11 1.28 16
9 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16
10 C -0.13 -2.47 6.60 31.99 0.21 -2.26 16
11 C -0.12 -3.15 6.46 31.40 0.20 -2.95 16
12 C 0.09 2.81 1.66 -10.82 -0.02 2.79 16
13 C 0.12 4.70 8.20 83.40 0.68 5.38 16
14 N -0.64 -30.76 3.58 -739.06 -2.65 -33.41 16
15 C -0.29 -16.78 11.03 84.04 0.93 -15.85 16
16 H 0.05 3.12 8.06 -2.91 -0.02 3.09 16
17 C -0.08 -4.80 5.50 84.86 0.47 -4.34 16
18 N -0.96 -61.63 13.70 21.65 0.30 -61.33 16
19 Si 1.10 51.86 25.51 68.60 1.75 53.61 16
20 H -0.27 -11.75 6.97 99.48 0.69 -11.05 16
21 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16
22 H -0.26 -10.87 5.65 99.48 0.56 -10.31 16
23 C 0.09 3.36 5.12 83.50 0.43 3.79 16
24 O -0.36 -9.64 11.02 -148.98 -1.64 -11.28 16
25 C -0.13 -2.11 4.40 -19.78 -0.09 -2.20 16
26 C -0.08 -1.01 9.81 22.47 0.22 -0.79 16
27 C -0.17 -2.15 10.11 22.36 0.23 -1.92 16
28 C 0.08 1.29 11.18 84.69 0.95 2.24 16
29 N -0.52 -11.75 10.36 -195.84 -2.03 -13.77 16
30 C 0.11 2.36 9.13 84.67 0.77 3.13 16
31 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16
32 H 0.08 0.48 7.56 -2.39 -0.02 0.46 16
33 H 0.06 0.60 7.40 -2.39 -0.02 0.58 16
34 H 0.42 4.96 7.89 -92.70 -0.73 4.23 16
35 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16
36 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16
37 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16
38 H 0.09 1.50 8.05 -2.39 -0.02 1.48 16
39 H 0.07 2.15 7.82 -2.39 -0.02 2.13 16
40 H 0.08 2.15 7.81 -2.39 -0.02 2.13 16
41 H 0.05 2.00 7.91 -2.39 -0.02 1.98 16
42 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16
43 H 0.25 15.88 8.73 -92.71 -0.81 15.07 16
44 H 0.06 2.14 6.98 -2.39 -0.02 2.12 16
45 H 0.05 2.08 6.08 -2.39 -0.01 2.07 16
46 H 0.16 1.20 8.00 -2.91 -0.02 1.18 16
47 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16
48 H 0.18 1.84 8.06 -2.91 -0.02 1.81 16
49 H 0.14 2.99 7.53 -2.91 -0.02 2.97 16
Total: -1.00 -79.83 394.09 -0.04 -79.87
By element:
Atomic # 1 Polarization: 16.13 SS G_CDS: 0.03 Total: 16.15 kcal
Atomic # 6 Polarization: -6.59 SS G_CDS: 6.78 Total: 0.19 kcal
Atomic # 7 Polarization: -115.52 SS G_CDS: -6.90 Total: -122.42 kcal
Atomic # 8 Polarization: -25.72 SS G_CDS: -1.69 Total: -27.40 kcal
Atomic # 14 Polarization: 51.86 SS G_CDS: 1.75 Total: 53.61 kcal
Total: -79.83 -0.04 -79.87 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001755056558.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.562 kcal
(2) G-P(sol) polarization free energy of solvation -79.829 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.267 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.039 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.867 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.305 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.30 seconds