Wall clock time and date at job start Wed Apr 1 2020 03:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46793 * 2 1 4 4 C 1.50697 * 109.47241 * 119.99751 * 2 1 3 5 5 H 1.08007 * 120.00004 * 119.99752 * 4 2 1 6 6 C 1.37879 * 120.00326 * 300.00628 * 4 2 1 7 7 N 1.31508 * 119.99893 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99911 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47787 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47528 * 119.99959 * 8 6 4 11 11 H 1.48506 * 109.47021 * 239.99379 * 8 6 4 12 12 N 1.46495 * 109.47197 * 239.99991 * 2 1 3 13 13 C 1.34782 * 120.00104 * 85.00011 * 12 2 1 14 14 O 1.21370 * 119.99709 * 359.97438 * 13 12 2 15 15 C 1.49315 * 120.00247 * 179.97438 * 13 12 2 16 16 O 1.21395 * 120.00064 * 359.97438 * 15 13 12 17 17 N 1.34777 * 120.00336 * 179.97438 * 15 13 12 18 18 C 1.39889 * 120.00267 * 184.62459 * 17 15 13 19 19 C 1.38931 * 120.00282 * 324.63743 * 18 17 15 20 20 C 1.38026 * 120.00048 * 180.27389 * 19 18 17 21 21 C 1.38920 * 119.99919 * 359.97438 * 20 19 18 22 22 N 1.39843 * 119.99830 * 180.02562 * 21 20 19 23 23 C 1.46843 * 110.99979 * 124.22594 * 22 21 20 24 24 C 1.53043 * 109.52106 * 174.15841 * 23 22 21 25 25 C 1.53120 * 109.27439 * 59.18090 * 24 23 22 26 26 C 1.53116 * 109.16296 * 302.34595 * 25 24 23 27 27 C 1.46844 * 110.99568 * 0.02562 * 22 21 20 28 28 C 1.38922 * 120.00267 * 0.03995 * 21 20 19 29 29 C 1.38021 * 120.00177 * 359.95524 * 28 21 20 30 30 H 1.09003 * 109.46793 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47062 * 299.99549 * 1 2 3 32 32 H 1.08996 * 109.47183 * 60.00358 * 1 2 3 33 33 H 0.97001 * 120.00309 * 180.02562 * 7 6 4 34 34 H 0.97001 * 120.00452 * 264.99741 * 12 2 1 35 35 H 0.96999 * 119.99581 * 4.62931 * 17 15 13 36 36 H 1.07996 * 119.99544 * 0.27881 * 19 18 17 37 37 H 1.08002 * 119.99875 * 180.02562 * 20 19 18 38 38 H 1.08991 * 109.46613 * 294.17610 * 23 22 21 39 39 H 1.09005 * 109.45938 * 54.14684 * 23 22 21 40 40 H 1.09001 * 109.49998 * 299.24389 * 24 23 22 41 41 H 1.09000 * 109.50226 * 179.12202 * 24 23 22 42 42 H 1.08997 * 109.52044 * 182.43738 * 25 24 23 43 43 H 1.09005 * 109.52214 * 62.25145 * 25 24 23 44 44 H 1.09004 * 109.50103 * 297.71548 * 26 25 24 45 45 H 1.08997 * 109.50215 * 177.59818 * 26 25 24 46 46 H 1.09000 * 109.46676 * 305.85572 * 27 22 21 47 47 H 1.08999 * 109.46488 * 65.82457 * 27 22 21 48 48 H 1.08006 * 119.99796 * 179.97438 * 28 21 20 49 49 H 1.08002 * 120.00258 * 180.02562 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9435 0.8301 2.6034 8 14 2.3226 -1.1195 4.0079 9 1 3.1476 -2.2862 3.6038 10 1 3.1472 -0.1858 4.8161 11 1 1.1679 -1.5866 4.8165 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0182 -2.3571 14 8 1.8580 1.1593 -2.4117 15 6 2.6454 -0.7219 -3.5762 16 8 2.9350 -1.8996 -3.5215 17 7 2.7736 -0.0497 -4.7373 18 6 3.1474 -0.7294 -5.9014 19 6 4.0469 -1.7859 -5.8306 20 6 4.4200 -2.4528 -6.9800 21 6 3.8957 -2.0680 -8.2076 22 7 4.2734 -2.7441 -9.3720 23 6 3.0982 -3.2603 -10.0854 24 6 3.5358 -3.8642 -11.4218 25 6 4.5360 -4.9942 -11.1626 26 6 5.7274 -4.4404 -10.3763 27 6 5.2262 -3.8200 -9.0702 28 6 2.9965 -1.0115 -8.2785 29 6 2.6233 -0.3446 -7.1292 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 0.7094 1.1617 3.4844 34 1 2.2491 -1.6317 -1.1526 35 1 2.6068 0.9054 -4.7657 36 1 4.4541 -2.0852 -4.8762 37 1 5.1190 -3.2743 -6.9249 38 1 2.6147 -4.0278 -9.4811 39 1 2.3970 -2.4459 -10.2670 40 1 4.0072 -3.0939 -12.0322 41 1 2.6653 -4.2612 -11.9441 42 1 4.8832 -5.3985 -12.1134 43 1 4.0532 -5.7826 -10.5851 44 1 6.2332 -3.6792 -10.9704 45 1 6.4227 -5.2491 -10.1518 46 1 6.0705 -3.4121 -8.5146 47 1 4.7325 -4.5848 -8.4707 48 1 2.5893 -0.7121 -9.2330 49 1 1.9239 0.4766 -7.1842 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123051190.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:52 Heat of formation + Delta-G solvation = -58.204213 kcal Electronic energy + Delta-G solvation = -29268.795476 eV Core-core repulsion = 25194.736250 eV Total energy + Delta-G solvation = -4074.059226 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.12620 -41.17959 -39.95766 -38.62881 -37.05044 -36.05857 -34.39536 -33.90956 -32.61545 -31.37442 -31.11629 -29.50829 -27.39369 -26.41298 -25.12945 -24.92811 -23.20308 -22.73435 -22.02352 -21.21712 -20.68564 -20.06217 -18.85440 -18.17917 -18.14221 -17.35925 -17.04361 -16.93016 -16.34599 -16.01331 -15.97530 -15.54359 -15.20149 -15.08068 -15.05324 -14.80035 -14.60686 -14.46983 -14.36687 -14.13506 -13.79874 -13.70707 -13.38453 -13.07613 -13.04102 -12.92221 -12.81801 -12.61375 -12.32073 -12.27643 -12.13349 -12.10304 -11.85138 -11.49507 -11.35024 -11.29517 -11.16255 -10.71593 -10.61672 -10.16725 -9.99732 -9.95331 -8.57151 -8.21482 -6.38632 -0.03900 0.39366 0.57758 1.32440 1.43783 1.46187 1.57778 2.11284 2.38193 2.61298 2.73213 2.90027 3.09422 3.46453 3.76524 3.83664 3.95504 4.01637 4.03342 4.19526 4.32731 4.37996 4.44044 4.49853 4.52728 4.63034 4.68485 4.73537 4.84038 4.87198 4.89923 4.93070 5.00167 5.05699 5.12321 5.19883 5.23778 5.27630 5.29055 5.33906 5.36247 5.43587 5.46106 5.58610 5.72522 5.77096 6.01485 6.02252 6.06499 6.28337 6.53775 6.63824 6.78132 7.05143 7.33554 8.84926 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.024857 B = 0.001802 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.170289 B =15534.471371 C =16221.231891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.267 3.733 3 H 0.016 0.984 4 C -0.551 4.551 5 H 0.070 0.930 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.973 3.027 9 H -0.264 1.264 10 H -0.281 1.281 11 H -0.277 1.277 12 N -0.670 5.670 13 C 0.496 3.504 14 O -0.557 6.557 15 C 0.516 3.484 16 O -0.522 6.522 17 N -0.632 5.632 18 C 0.093 3.907 19 C -0.106 4.106 20 C -0.159 4.159 21 C 0.098 3.902 22 N -0.489 5.489 23 C 0.053 3.947 24 C -0.115 4.115 25 C -0.124 4.124 26 C -0.115 4.115 27 C 0.045 3.955 28 C -0.121 4.121 29 C -0.106 4.106 30 H 0.039 0.961 31 H 0.074 0.926 32 H 0.020 0.980 33 H 0.268 0.732 34 H 0.410 0.590 35 H 0.429 0.571 36 H 0.122 0.878 37 H 0.140 0.860 38 H 0.036 0.964 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.042 0.958 48 H 0.153 0.847 49 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.312 -9.357 -29.276 31.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.164 3.836 3 H 0.034 0.966 4 C -0.589 4.589 5 H 0.088 0.912 6 C -0.181 4.181 7 N -0.550 5.550 8 Si 0.797 3.203 9 H -0.189 1.189 10 H -0.207 1.207 11 H -0.202 1.202 12 N -0.319 5.319 13 C 0.276 3.724 14 O -0.437 6.437 15 C 0.298 3.702 16 O -0.397 6.397 17 N -0.279 5.279 18 C -0.001 4.001 19 C -0.127 4.127 20 C -0.180 4.180 21 C -0.001 4.001 22 N -0.204 5.204 23 C -0.072 4.072 24 C -0.153 4.153 25 C -0.162 4.162 26 C -0.153 4.153 27 C -0.082 4.082 28 C -0.142 4.142 29 C -0.127 4.127 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.246 0.754 35 H 0.268 0.732 36 H 0.140 0.860 37 H 0.157 0.843 38 H 0.054 0.946 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.099 0.901 47 H 0.060 0.940 48 H 0.170 0.830 49 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.438 -8.954 -29.449 31.446 hybrid contribution -0.108 -0.475 1.816 1.881 sum 6.330 -9.429 -27.632 29.875 Atomic orbital electron populations 1.21925 0.97400 0.99800 1.00346 1.18646 0.91763 0.92447 0.80716 0.96608 1.21508 1.32994 1.13735 0.90711 0.91198 1.25730 0.94758 0.95571 1.02082 1.70019 1.36602 1.23582 1.24793 0.85285 0.78146 0.78468 0.78377 1.18852 1.20671 1.20248 1.46263 1.61851 1.14808 1.09016 1.20138 0.80235 0.86991 0.85069 1.90711 1.51520 1.16307 1.85201 1.20200 0.78606 0.86642 0.84766 1.90721 1.48180 1.16059 1.84774 1.43038 1.65586 1.13258 1.05996 1.17918 0.98750 0.97586 0.85820 1.21139 0.96096 0.96166 0.99305 1.21297 1.04058 1.01814 0.90875 1.19160 0.96202 0.95893 0.88804 1.59182 1.14905 1.26953 1.19380 1.22349 0.90440 0.99161 0.95215 1.21625 0.99919 0.98195 0.95536 1.21626 0.96067 0.97645 1.00838 1.21610 0.98159 1.00399 0.95089 1.22362 0.95575 0.91744 0.98501 1.20801 0.99128 0.95406 0.98824 1.21050 0.99881 1.01698 0.90034 0.94172 0.90751 0.96061 0.92293 0.75445 0.73166 0.86036 0.84282 0.94611 0.89301 0.90959 0.89825 0.90423 0.92275 0.91181 0.90052 0.90120 0.93962 0.82983 0.83003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.74 9.26 71.98 0.67 -6.07 16 2 C 0.27 13.70 2.56 44.25 0.11 13.81 16 3 H 0.02 0.94 7.58 -2.39 -0.02 0.92 16 4 C -0.55 -29.28 8.73 25.60 0.22 -29.05 16 5 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 6 C 0.02 1.03 5.30 84.66 0.45 1.48 16 7 N -0.91 -51.05 11.32 21.45 0.24 -50.81 16 8 Si 0.97 41.95 29.54 68.60 2.03 43.98 16 9 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 10 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 11 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 12 N -0.67 -29.20 5.06 -447.56 -2.27 -31.46 16 13 C 0.50 20.17 7.85 87.23 0.68 20.86 16 14 O -0.56 -25.03 16.14 -3.31 -0.05 -25.08 16 15 C 0.52 17.72 7.73 87.23 0.67 18.40 16 16 O -0.52 -19.14 13.92 -3.39 -0.05 -19.19 16 17 N -0.63 -17.52 5.32 -304.73 -1.62 -19.14 16 18 C 0.09 2.35 6.30 38.19 0.24 2.59 16 19 C -0.11 -2.82 8.69 22.39 0.19 -2.63 16 20 C -0.16 -3.49 8.81 22.38 0.20 -3.29 16 21 C 0.10 1.88 5.65 38.19 0.22 2.09 16 22 N -0.49 -7.69 4.70 -695.21 -3.27 -10.96 16 23 C 0.05 0.67 5.26 86.33 0.45 1.13 16 24 C -0.12 -1.05 6.09 30.65 0.19 -0.86 16 25 C -0.12 -1.10 6.00 30.67 0.18 -0.91 16 26 C -0.11 -1.16 6.09 30.65 0.19 -0.97 16 27 C 0.04 0.62 4.15 86.33 0.36 0.98 16 28 C -0.12 -2.11 9.15 22.38 0.20 -1.91 16 29 C -0.11 -2.07 9.96 22.38 0.22 -1.84 16 30 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.07 4.00 6.07 -2.39 -0.01 3.99 16 32 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 34 H 0.41 16.55 8.01 -92.71 -0.74 15.81 16 35 H 0.43 10.49 8.30 -92.71 -0.77 9.72 16 36 H 0.12 3.67 6.22 -2.91 -0.02 3.65 16 37 H 0.14 2.64 5.80 -2.91 -0.02 2.62 16 38 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.09 0.98 6.70 -2.38 -0.02 0.97 16 40 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 44 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 45 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.08 1.14 6.98 -2.39 -0.02 1.12 16 47 H 0.04 0.62 7.73 -2.39 -0.02 0.60 16 48 H 0.15 1.91 7.15 -2.91 -0.02 1.89 16 49 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -64.06 392.83 -0.05 -64.12 By element: Atomic # 1 Polarization: 35.28 SS G_CDS: -0.52 Total: 34.75 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: 5.46 Total: 13.79 kcal Atomic # 7 Polarization: -105.45 SS G_CDS: -6.91 Total: -112.37 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: -0.10 Total: -44.26 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -64.06 -0.05 -64.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123051190.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.912 kcal (2) G-P(sol) polarization free energy of solvation -64.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds