Wall clock time and date at job start Wed Apr 1 2020 03:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 O 1.42905 * 109.47264 * 240.00288 * 2 1 3 5 5 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 6 6 N 1.46499 * 109.47658 * 184.99947 * 5 2 1 7 7 C 1.46497 * 120.00084 * 89.99809 * 6 5 2 8 8 C 1.50706 * 109.47328 * 90.00310 * 7 6 5 9 9 O 1.21287 * 119.99336 * 0.02562 * 8 7 6 10 10 N 1.34769 * 120.00253 * 179.97438 * 8 7 6 11 11 C 1.46496 * 119.99831 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.47032 * 90.00578 * 11 10 8 13 13 H 1.08001 * 119.99841 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00013 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00257 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99935 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47358 * 89.99617 * 16 14 12 18 18 H 1.48497 * 109.47499 * 209.99837 * 16 14 12 19 19 H 1.48506 * 109.46941 * 329.99475 * 16 14 12 20 20 C 1.46496 * 120.00278 * 0.02562 * 10 8 7 21 21 C 1.53004 * 109.47734 * 89.99248 * 20 10 8 22 22 C 1.47200 * 109.47347 * 180.02562 * 21 20 10 23 23 N 7.27262 * 117.35742 * 28.31281 * 2 1 3 24 24 C 1.39672 * 120.00149 * 270.00205 * 6 5 2 25 25 C 1.38913 * 120.07447 * 359.72051 * 24 6 5 26 26 C 1.38106 * 119.92455 * 179.76975 * 25 24 6 27 27 C 1.38282 * 120.07550 * 0.50503 * 26 25 24 28 28 C 1.38288 * 120.14895 * 359.74603 * 27 26 25 29 29 C 1.38103 * 120.07664 * 0.02562 * 28 27 26 30 30 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 33 33 H 0.96702 * 113.99404 * 59.99785 * 4 2 1 34 34 H 1.09001 * 109.47563 * 305.00337 * 5 2 1 35 35 H 1.09004 * 109.47313 * 64.99993 * 5 2 1 36 36 H 1.08998 * 109.47425 * 210.00148 * 7 6 5 37 37 H 1.09004 * 109.47057 * 330.00625 * 7 6 5 38 38 H 1.09004 * 109.47097 * 210.00055 * 11 10 8 39 39 H 1.08995 * 109.47620 * 330.00537 * 11 10 8 40 40 H 0.97003 * 120.00279 * 180.02562 * 15 14 12 41 41 H 1.09000 * 109.47627 * 209.99797 * 20 10 8 42 42 H 1.09005 * 109.46870 * 329.99365 * 20 10 8 43 43 H 1.09000 * 109.47011 * 300.00925 * 21 20 10 44 44 H 1.08998 * 109.46192 * 60.00176 * 21 20 10 45 45 H 1.07996 * 120.03700 * 0.02562 * 25 24 6 46 46 H 1.07998 * 119.96243 * 180.25963 * 26 25 24 47 47 H 1.07999 * 119.92943 * 179.72661 * 27 26 25 48 48 H 1.07997 * 119.96295 * 179.97438 * 28 27 26 49 49 H 1.07996 * 120.04335 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2491 6 7 3.5001 -0.6179 1.3109 7 6 4.1259 0.5099 2.0056 8 6 4.3422 0.1508 3.4532 9 8 4.0070 -0.9401 3.8638 10 7 4.9090 1.0413 4.2910 11 6 5.1187 0.6923 5.6982 12 6 6.4751 0.0560 5.8612 13 1 7.1165 -0.0756 5.0023 14 6 6.8967 -0.3590 7.1066 15 7 6.1155 -0.1992 8.1523 16 14 8.5776 -1.1483 7.3084 17 1 9.5876 -0.0970 7.5908 18 1 8.5392 -2.1134 8.4364 19 1 8.9425 -1.8623 6.0584 20 6 5.3143 2.3587 3.7948 21 6 4.1514 3.3413 3.9472 22 6 4.5585 4.6648 3.4481 23 7 4.8720 5.6865 3.0635 24 6 4.2955 -1.5946 0.7073 25 6 3.7038 -2.6677 0.0531 26 6 4.4932 -3.6291 -0.5468 27 6 5.8712 -3.5300 -0.4876 28 6 6.4635 -2.4658 0.1673 29 6 5.6801 -1.4983 0.7653 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.7210 -0.2700 -1.9980 34 1 1.6054 -0.2618 2.1369 35 1 1.7517 -1.7715 1.2055 36 1 5.0851 0.7363 1.5402 37 1 3.4757 1.3824 1.9410 38 1 5.0648 1.5941 6.3081 39 1 4.3478 -0.0089 6.0175 40 1 6.4123 -0.4908 9.0286 41 1 6.1693 2.7160 4.3687 42 1 5.5894 2.2819 2.7428 43 1 3.2963 2.9840 3.3733 44 1 3.8763 3.4180 4.9991 45 1 2.6277 -2.7478 0.0100 46 1 4.0338 -4.4614 -1.0592 47 1 6.4863 -4.2855 -0.9537 48 1 7.5400 -2.3915 0.2120 49 1 6.1432 -0.6677 1.2770 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170720895.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:47 Heat of formation + Delta-G solvation = -16.770517 kcal Electronic energy + Delta-G solvation = -30929.028777 eV Core-core repulsion = 26856.766251 eV Total energy + Delta-G solvation = -4072.262526 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.98211 -38.77299 -37.67766 -36.91183 -35.59781 -35.05724 -32.91324 -31.79647 -30.88232 -30.70539 -29.76994 -28.40362 -26.92017 -25.04623 -24.04863 -22.88026 -22.22313 -21.52476 -20.42494 -18.64067 -17.91707 -17.67555 -17.06445 -16.72631 -16.45638 -16.00195 -15.53656 -15.04479 -14.93048 -14.76527 -14.64184 -14.21754 -14.07004 -13.86014 -13.68856 -13.41987 -13.21696 -13.00493 -12.75833 -12.66910 -12.49890 -12.42662 -12.22794 -12.20143 -11.95246 -11.82524 -11.57752 -11.30777 -11.25148 -11.12109 -11.01913 -10.87787 -10.64446 -10.54810 -10.19378 -10.13888 -9.88936 -9.70348 -8.95365 -8.56022 -8.47681 -7.86902 -7.03099 -6.09389 -4.13697 1.79720 1.95346 2.67560 2.75784 3.06795 3.25074 3.28736 3.36246 3.41235 3.67236 4.05958 4.15380 4.27685 4.42282 4.70443 4.81064 4.87195 4.88921 4.99032 5.10290 5.12217 5.12841 5.22092 5.26867 5.32010 5.35408 5.41413 5.49297 5.54942 5.62096 5.71121 5.76304 5.77177 5.84933 5.95408 6.01276 6.05501 6.30223 6.57302 6.79721 6.89251 6.95031 7.13833 7.33145 7.37940 7.44325 7.51630 7.52187 7.73250 7.86966 8.16532 8.23675 8.83338 8.97567 9.52109 10.98754 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007850 B = 0.004053 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3565.948595 B = 6907.640589 C = 9061.076058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.081 3.919 3 H 0.053 0.947 4 O -0.552 6.552 5 C 0.135 3.865 6 N -0.603 5.603 7 C 0.100 3.900 8 C 0.483 3.517 9 O -0.516 6.516 10 N -0.598 5.598 11 C 0.246 3.754 12 C -0.527 4.527 13 H 0.058 0.942 14 C 0.063 3.937 15 N -0.894 5.894 16 Si 0.895 3.105 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.273 1.273 20 C 0.116 3.884 21 C -0.050 4.050 22 C 0.216 3.784 23 N -0.444 5.444 24 C 0.235 3.765 25 C -0.168 4.168 26 C -0.084 4.084 27 C -0.184 4.184 28 C -0.078 4.078 29 C -0.191 4.191 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.370 0.630 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.034 0.966 39 H 0.045 0.955 40 H 0.263 0.737 41 H 0.095 0.905 42 H 0.074 0.926 43 H 0.104 0.896 44 H 0.118 0.882 45 H 0.121 0.879 46 H 0.113 0.887 47 H 0.111 0.889 48 H 0.115 0.885 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.614 1.968 -17.505 20.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.020 3.980 3 H 0.071 0.929 4 O -0.357 6.357 5 C 0.011 3.989 6 N -0.312 5.312 7 C -0.027 4.027 8 C 0.267 3.733 9 O -0.390 6.390 10 N -0.331 5.331 11 C 0.127 3.873 12 C -0.566 4.566 13 H 0.076 0.924 14 C -0.139 4.139 15 N -0.533 5.533 16 Si 0.723 3.277 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.010 4.010 21 C -0.092 4.092 22 C -0.102 4.102 23 N -0.121 5.121 24 C 0.134 3.866 25 C -0.190 4.190 26 C -0.102 4.102 27 C -0.204 4.204 28 C -0.097 4.097 29 C -0.213 4.213 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.216 0.784 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.118 0.882 37 H 0.111 0.889 38 H 0.052 0.948 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.114 0.886 42 H 0.092 0.908 43 H 0.122 0.878 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.131 0.869 47 H 0.129 0.871 48 H 0.133 0.867 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.168 2.576 -17.092 19.566 hybrid contribution 0.565 -0.283 0.164 0.653 sum -8.603 2.293 -16.928 19.127 Atomic orbital electron populations 1.22471 0.96300 1.03002 1.02539 1.22413 0.92422 0.95893 0.87241 0.92871 1.86691 1.76852 1.56776 1.15335 1.21431 0.80167 1.02104 0.95160 1.45835 1.03726 1.24363 1.57233 1.21457 1.00362 0.89596 0.91300 1.21112 0.78850 0.85343 0.88003 1.90712 1.49732 1.21447 1.77127 1.48276 1.59591 1.12398 1.12863 1.19324 0.97554 0.96625 0.73774 1.21402 1.01265 1.40102 0.93805 0.92411 1.24897 0.97580 0.95647 0.95768 1.69912 1.36557 1.47371 0.99481 0.86539 0.83984 0.79262 0.77936 1.20654 1.21115 1.19810 1.21314 0.95782 0.83342 1.00596 1.19904 1.00867 0.84414 1.03988 1.29089 0.93343 0.94681 0.93099 1.81209 1.08811 1.12261 1.09838 1.17639 0.89896 0.88131 0.90910 1.20570 0.99659 0.95228 1.03543 1.20791 0.93618 0.97710 0.98110 1.20798 0.94786 0.99872 1.04901 1.20796 0.99069 0.93718 0.96106 1.20646 0.91922 1.02236 1.06472 0.91457 0.91627 0.92300 0.78424 0.89453 0.89845 0.88247 0.88852 0.94827 0.93713 0.92700 0.88618 0.90817 0.87784 0.86408 0.86075 0.86911 0.87138 0.86698 0.86674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.20 9.53 37.16 0.35 -0.84 16 2 C 0.08 0.68 3.82 -26.74 -0.10 0.58 16 3 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 4 O -0.55 -5.12 11.16 -35.23 -0.39 -5.51 16 5 C 0.14 1.52 5.00 -4.05 -0.02 1.50 16 6 N -0.60 -8.23 2.07 -173.12 -0.36 -8.58 16 7 C 0.10 1.28 4.19 -5.19 -0.02 1.26 16 8 C 0.48 8.56 7.74 -10.99 -0.09 8.48 16 9 O -0.52 -11.87 16.01 5.55 0.09 -11.78 16 10 N -0.60 -10.47 2.46 -175.06 -0.43 -10.90 16 11 C 0.25 5.72 5.16 -5.19 -0.03 5.69 16 12 C -0.53 -13.99 9.39 -34.44 -0.32 -14.32 16 13 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -25.49 13.29 55.43 0.74 -24.76 16 16 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 C 0.12 1.45 5.17 -4.04 -0.02 1.42 16 21 C -0.05 -0.47 6.03 -29.52 -0.18 -0.65 16 22 C 0.22 2.43 15.43 -20.77 -0.32 2.11 16 23 N -0.44 -6.22 18.54 42.15 0.78 -5.44 16 24 C 0.23 3.62 6.30 -83.79 -0.53 3.09 16 25 C -0.17 -2.43 8.06 -39.38 -0.32 -2.75 16 26 C -0.08 -1.13 10.04 -39.61 -0.40 -1.53 16 27 C -0.18 -2.52 10.04 -39.55 -0.40 -2.92 16 28 C -0.08 -1.15 10.04 -39.61 -0.40 -1.55 16 29 C -0.19 -3.02 9.21 -39.38 -0.36 -3.38 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.37 2.04 9.08 45.56 0.41 2.46 16 34 H 0.09 0.93 8.07 -51.93 -0.42 0.51 16 35 H 0.08 1.01 6.19 -51.93 -0.32 0.69 16 36 H 0.10 1.18 5.46 -51.93 -0.28 0.90 16 37 H 0.09 0.85 7.12 -51.93 -0.37 0.48 16 38 H 0.03 0.77 8.07 -51.93 -0.42 0.36 16 39 H 0.04 1.20 7.42 -51.93 -0.39 0.82 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.10 1.30 8.07 -51.93 -0.42 0.88 16 42 H 0.07 0.75 6.44 -51.93 -0.33 0.41 16 43 H 0.10 0.74 7.22 -51.93 -0.38 0.36 16 44 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.12 1.64 5.53 -52.49 -0.29 1.35 16 46 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 47 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 48 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 49 H 0.12 1.79 6.14 -52.49 -0.32 1.47 16 LS Contribution 410.81 15.07 6.19 6.19 Total: -1.00 -35.21 410.81 -8.10 -43.31 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.45 Total: 3.27 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -3.24 Total: -2.17 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: 0.73 Total: -49.68 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.30 Total: -17.29 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.21 -8.10 -43.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170720895.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.540 kcal (2) G-P(sol) polarization free energy of solvation -35.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds