Wall clock time and date at job start Wed Apr 1 2020 04:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.47218 * 2 1 4 4 C 1.50699 * 109.46752 * 120.00127 * 2 1 3 5 5 O 1.21285 * 119.99831 * 93.74036 * 4 2 1 6 6 N 1.34770 * 120.00174 * 273.73238 * 4 2 1 7 7 C 1.46496 * 119.99869 * 0.02562 * 6 4 2 8 8 C 1.46500 * 120.00053 * 180.02562 * 6 4 2 9 9 C 1.50700 * 109.47006 * 90.00469 * 8 6 4 10 10 H 1.08000 * 120.00157 * 359.97438 * 9 8 6 11 11 C 1.37880 * 119.99941 * 180.02562 * 9 8 6 12 12 N 1.31518 * 119.99806 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 120.00138 * 0.02562 * 11 9 8 14 14 H 1.48489 * 109.47371 * 89.99772 * 13 11 9 15 15 H 1.48495 * 109.47063 * 210.00252 * 13 11 9 16 16 H 1.48502 * 109.46922 * 329.99662 * 13 11 9 17 17 N 1.46900 * 109.46748 * 239.99963 * 2 1 3 18 18 C 1.47189 * 111.00161 * 59.27801 * 17 2 1 19 19 C 1.52985 * 108.72818 * 54.36563 * 18 17 2 20 20 N 1.46005 * 110.04348 * 50.29307 * 19 18 17 21 21 C 1.39930 * 118.53963 * 161.81739 * 20 19 18 22 22 C 1.38868 * 120.07118 * 89.18546 * 21 20 19 23 23 C 1.38106 * 119.93165 * 180.30278 * 22 21 20 24 24 C 1.38286 * 120.06820 * 359.42468 * 23 22 21 25 25 C 1.38287 * 120.13888 * 0.60068 * 24 23 22 26 26 C 1.38116 * 120.07119 * 359.67583 * 25 24 23 27 27 C 1.33723 * 122.92797 * 342.09560 * 20 19 18 28 28 O 1.21282 * 118.62706 * 181.42792 * 27 20 19 29 29 C 1.46910 * 110.99916 * 182.17001 * 17 2 1 30 30 H 1.08996 * 109.47038 * 300.00002 * 1 2 3 31 31 H 1.09003 * 109.46686 * 59.99596 * 1 2 3 32 32 H 1.08997 * 109.47218 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47709 * 89.99866 * 7 6 4 34 34 H 1.09000 * 109.47127 * 209.99799 * 7 6 4 35 35 H 1.09003 * 109.47375 * 329.99387 * 7 6 4 36 36 H 1.08998 * 109.47056 * 209.99877 * 8 6 4 37 37 H 1.08993 * 109.47378 * 330.00526 * 8 6 4 38 38 H 0.96999 * 119.99848 * 179.97438 * 12 11 9 39 39 H 1.08992 * 109.59322 * 294.59247 * 18 17 2 40 40 H 1.09006 * 109.71940 * 174.20878 * 18 17 2 41 41 H 1.08993 * 109.37520 * 290.11796 * 19 18 17 42 42 H 1.09000 * 109.37659 * 170.46873 * 19 18 17 43 43 H 1.08004 * 120.03295 * 0.02562 * 22 21 20 44 44 H 1.08000 * 119.96721 * 179.70491 * 23 22 21 45 45 H 1.07997 * 119.93350 * 180.28345 * 24 23 22 46 46 H 1.08000 * 119.96405 * 179.70496 * 25 24 23 47 47 H 1.07995 * 120.03642 * 180.02562 * 26 25 24 48 48 H 1.09005 * 109.38507 * 47.08324 * 29 17 2 49 49 H 1.08997 * 109.38871 * 166.87872 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.2990 -1.8926 1.1817 6 7 2.1853 -0.0322 2.3850 7 6 1.8627 1.3956 2.4439 8 6 2.6740 -0.7227 3.5810 9 6 4.1782 -0.6425 3.6279 10 1 4.7162 -0.1289 2.8449 11 6 4.8675 -1.2257 4.6699 12 7 6.1802 -1.1561 4.7105 13 14 3.9370 -2.1159 6.0231 14 1 3.7773 -3.5458 5.6559 15 1 4.6957 -2.0133 7.2955 16 1 2.5984 -1.4961 6.1936 17 7 2.0196 -0.6925 -1.1995 18 6 1.5336 -0.0352 -2.4234 19 6 1.9175 1.4448 -2.3717 20 7 3.3363 1.5831 -2.0562 21 6 3.9679 2.8000 -2.3359 22 6 3.9843 3.8105 -1.3836 23 6 4.6031 5.0127 -1.6650 24 6 5.2162 5.2064 -2.8893 25 6 5.2013 4.2023 -3.8399 26 6 4.5792 2.9998 -3.5667 27 6 4.0604 0.5968 -1.5167 28 8 5.2277 0.8053 -1.2620 29 6 3.4873 -0.7573 -1.2078 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 0.8161 1.5206 2.7212 34 1 2.4958 1.8807 3.1868 35 1 2.0365 1.8480 1.4675 36 1 2.2571 -0.2492 4.4698 37 1 2.3668 -1.7680 3.5481 38 1 6.6651 -1.5661 5.4438 39 1 0.4494 -0.1297 -2.4832 40 1 1.9899 -0.5008 -3.2970 41 1 1.3261 1.9452 -1.6050 42 1 1.7157 1.9048 -3.3391 43 1 3.5097 3.6581 -0.4254 44 1 4.6120 5.8007 -0.9266 45 1 5.7035 6.1457 -3.1053 46 1 5.6769 4.3583 -4.7969 47 1 4.5681 2.2158 -4.3094 48 1 3.8404 -1.0880 -0.2310 49 1 3.8139 -1.4654 -1.9693 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360617146.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:59 Heat of formation + Delta-G solvation = -26.271757 kcal Electronic energy + Delta-G solvation = -32035.249107 eV Core-core repulsion = 27962.574577 eV Total energy + Delta-G solvation = -4072.674530 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.58382 -40.91938 -39.63968 -38.57886 -36.72749 -36.12984 -34.77930 -32.88504 -31.94302 -31.44269 -30.65073 -30.00221 -27.51187 -26.79258 -26.01177 -24.61252 -23.83727 -23.60947 -22.41366 -20.72834 -19.36560 -19.18194 -18.69173 -18.49074 -17.90197 -17.39991 -17.20071 -16.95301 -16.63064 -16.14269 -16.02579 -15.74961 -15.52016 -15.36700 -14.85779 -14.68026 -14.55215 -14.41777 -14.13447 -13.99688 -13.79441 -13.70916 -13.52294 -13.36016 -13.16424 -13.03658 -12.91734 -12.62886 -12.57106 -12.52361 -12.45537 -12.27599 -12.07770 -12.04525 -11.79399 -11.62342 -10.86860 -10.56700 -10.11596 -9.95312 -9.81060 -9.45833 -9.41755 -8.36783 -6.43885 0.21713 0.37963 1.27013 1.29465 1.35077 1.43442 1.62658 1.72836 2.17963 2.28348 2.67911 2.73014 2.97026 3.36066 3.50601 3.72293 3.84888 3.87584 3.93349 3.98680 4.07789 4.19112 4.20816 4.29266 4.34842 4.43586 4.48020 4.53854 4.55976 4.60196 4.62438 4.71409 4.77408 4.81885 4.86143 4.89951 4.96288 5.01358 5.26562 5.31298 5.41403 5.45717 5.47249 5.50534 5.52609 5.59322 5.80357 6.00907 6.10550 6.19456 6.58156 6.63850 6.90308 7.17100 7.37953 8.81013 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012130 B = 0.003712 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.764441 B = 7542.303934 C = 8618.297333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.064 3.936 3 H 0.071 0.929 4 C 0.498 3.502 5 O -0.573 6.573 6 N -0.608 5.608 7 C 0.077 3.923 8 C 0.227 3.773 9 C -0.539 4.539 10 H 0.015 0.985 11 C 0.008 3.992 12 N -0.948 5.948 13 Si 0.955 3.045 14 H -0.274 1.274 15 H -0.274 1.274 16 H -0.233 1.233 17 N -0.507 5.507 18 C 0.037 3.963 19 C 0.070 3.930 20 N -0.560 5.560 21 C 0.111 3.889 22 C -0.130 4.130 23 C -0.117 4.117 24 C -0.116 4.116 25 C -0.114 4.114 26 C -0.122 4.122 27 C 0.487 3.513 28 O -0.586 6.586 29 C 0.048 3.952 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.022 0.978 38 H 0.269 0.731 39 H 0.144 0.856 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.145 0.855 45 H 0.155 0.845 46 H 0.153 0.847 47 H 0.128 0.872 48 H 0.072 0.928 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.555 14.264 -19.411 29.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.047 4.047 3 H 0.088 0.912 4 C 0.286 3.714 5 O -0.452 6.452 6 N -0.340 5.340 7 C -0.065 4.065 8 C 0.104 3.896 9 C -0.578 4.578 10 H 0.033 0.967 11 C -0.190 4.190 12 N -0.588 5.588 13 Si 0.777 3.223 14 H -0.200 1.200 15 H -0.199 1.199 16 H -0.156 1.156 17 N -0.231 5.231 18 C -0.090 4.090 19 C -0.052 4.052 20 N -0.290 5.290 21 C 0.022 3.978 22 C -0.149 4.149 23 C -0.136 4.136 24 C -0.134 4.134 25 C -0.132 4.132 26 C -0.141 4.141 27 C 0.275 3.725 28 O -0.465 6.465 29 C -0.084 4.084 30 H 0.097 0.903 31 H 0.128 0.872 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.040 0.960 38 H 0.078 0.922 39 H 0.162 0.838 40 H 0.121 0.879 41 H 0.104 0.896 42 H 0.134 0.866 43 H 0.131 0.869 44 H 0.163 0.837 45 H 0.172 0.828 46 H 0.171 0.829 47 H 0.146 0.854 48 H 0.091 0.909 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -15.903 13.194 -19.159 28.179 hybrid contribution 1.345 0.022 1.071 1.720 sum -14.558 13.216 -18.088 26.716 Atomic orbital electron populations 1.21832 0.87990 1.04039 1.05084 1.21874 1.00090 0.95414 0.87303 0.91150 1.21141 0.77685 0.87396 0.85210 1.90644 1.51897 1.17950 1.84747 1.47973 1.63908 1.11303 1.10820 1.21987 1.02171 0.79379 1.02941 1.19314 0.92367 0.93359 0.84530 1.21533 0.92138 1.35865 1.08224 0.96701 1.25968 0.95683 0.96309 1.01009 1.70096 1.08647 1.46298 1.33767 0.85616 0.80029 0.79080 0.77590 1.19999 1.19906 1.15595 1.62321 1.05835 1.52442 1.02479 1.22971 1.04904 0.89660 0.91425 1.22611 0.77851 1.00344 1.04373 1.45150 1.11621 1.10625 1.61619 1.17848 0.99126 0.86047 0.94791 1.21440 1.00788 0.94292 0.98391 1.21369 0.97202 0.96767 0.98214 1.21609 0.98331 1.00393 0.93063 1.21413 0.98444 0.92417 1.00916 1.21455 0.97873 0.98727 0.96058 1.21710 0.86406 0.88091 0.76250 1.90747 1.19717 1.82627 1.53365 1.22344 0.89275 0.92205 1.04550 0.90269 0.87210 0.91756 0.88921 0.91910 0.90887 0.92870 0.95997 0.92240 0.83831 0.87917 0.89552 0.86636 0.86885 0.83701 0.82782 0.82903 0.85388 0.90927 0.85373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 8.84 71.98 0.64 -1.65 16 2 C 0.06 1.76 1.13 44.17 0.05 1.81 16 3 H 0.07 1.84 3.75 -2.39 -0.01 1.83 16 4 C 0.50 20.54 5.69 87.66 0.50 21.04 16 5 O -0.57 -29.35 15.00 -3.04 -0.05 -29.40 16 6 N -0.61 -25.54 2.86 -851.16 -2.43 -27.97 16 7 C 0.08 2.32 10.06 127.77 1.29 3.61 16 8 C 0.23 11.43 4.23 85.63 0.36 11.79 16 9 C -0.54 -33.63 9.94 25.60 0.25 -33.37 16 10 H 0.01 1.06 8.06 -2.91 -0.02 1.03 16 11 C 0.01 0.50 5.47 84.65 0.46 0.96 16 12 N -0.95 -63.23 13.96 21.45 0.30 -62.93 16 13 Si 0.96 45.94 27.47 68.60 1.88 47.82 16 14 H -0.27 -13.21 7.11 99.48 0.71 -12.51 16 15 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 16 H -0.23 -9.88 6.54 99.48 0.65 -9.23 16 17 N -0.51 -13.39 4.62 -880.01 -4.07 -17.46 16 18 C 0.04 0.53 5.47 86.24 0.47 1.00 16 19 C 0.07 1.01 5.61 86.47 0.49 1.50 16 20 N -0.56 -14.28 2.67 -634.52 -1.69 -15.98 16 21 C 0.11 2.88 4.15 38.15 0.16 3.04 16 22 C -0.13 -3.29 9.97 22.39 0.22 -3.07 16 23 C -0.12 -2.38 10.04 22.25 0.22 -2.15 16 24 C -0.12 -1.99 10.04 22.29 0.22 -1.76 16 25 C -0.11 -2.02 10.04 22.25 0.22 -1.80 16 26 C -0.12 -2.71 9.97 22.39 0.22 -2.49 16 27 C 0.49 17.43 6.92 87.68 0.61 18.04 16 28 O -0.59 -27.84 16.80 -3.04 -0.05 -27.90 16 29 C 0.05 1.67 5.54 85.41 0.47 2.14 16 30 H 0.08 1.22 7.94 -2.39 -0.02 1.20 16 31 H 0.11 0.94 6.24 -2.39 -0.01 0.92 16 32 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.06 2.06 8.07 -2.39 -0.02 2.04 16 35 H 0.07 1.90 5.83 -2.39 -0.01 1.89 16 36 H 0.05 2.42 7.13 -2.39 -0.02 2.41 16 37 H 0.02 1.17 6.85 -2.39 -0.02 1.16 16 38 H 0.27 16.55 8.31 -92.71 -0.77 15.78 16 39 H 0.14 1.03 6.61 -2.39 -0.02 1.02 16 40 H 0.10 1.29 8.08 -2.38 -0.02 1.28 16 41 H 0.09 1.05 6.56 -2.39 -0.02 1.03 16 42 H 0.12 1.03 8.11 -2.39 -0.02 1.01 16 43 H 0.11 2.93 8.06 -2.91 -0.02 2.91 16 44 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 45 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 46 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 47 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16 48 H 0.07 3.44 5.92 -2.38 -0.01 3.43 16 49 H 0.13 3.96 8.14 -2.39 -0.02 3.94 16 Total: -1.00 -96.18 389.42 1.66 -94.52 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.90 Total: 20.66 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: 6.86 Total: 18.63 kcal Atomic # 7 Polarization: -116.44 SS G_CDS: -7.89 Total: -124.34 kcal Atomic # 8 Polarization: -57.20 SS G_CDS: -0.10 Total: -57.29 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 1.88 Total: 47.82 kcal Total: -96.18 1.66 -94.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360617146.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.251 kcal (2) G-P(sol) polarization free energy of solvation -96.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds