Wall clock time and date at job start Wed Apr 1 2020 03:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47290 * 2 1 4 4 O 1.42897 * 109.47477 * 120.00368 * 2 1 3 5 5 C 1.53004 * 109.46778 * 240.00213 * 2 1 3 6 6 H 1.08997 * 109.47075 * 58.59772 * 5 2 1 7 7 C 1.53006 * 109.46850 * 178.59659 * 5 2 1 8 8 O 1.42903 * 109.46923 * 55.00251 * 7 5 2 9 9 N 1.46901 * 109.47106 * 298.59645 * 5 2 1 10 10 C 1.46900 * 110.99661 * 151.73324 * 9 5 2 11 11 C 1.50698 * 109.46654 * 184.85085 * 10 9 5 12 12 C 1.35088 * 126.07368 * 102.93174 * 11 10 9 13 13 N 1.35044 * 107.97738 * 179.97438 * 12 11 10 14 14 C 1.46501 * 125.92697 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.46976 * 125.00026 * 14 13 12 16 16 H 1.08000 * 119.99849 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00456 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99173 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00555 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47207 * 90.00074 * 19 17 15 21 21 H 1.48501 * 109.47079 * 210.00178 * 19 17 15 22 22 H 1.48499 * 109.46983 * 329.99939 * 19 17 15 23 23 N 1.40072 * 108.13731 * 359.97438 * 13 12 11 24 24 C 1.31618 * 108.11211 * 359.75664 * 23 13 12 25 25 C 1.48411 * 126.03857 * 180.22066 * 24 23 13 26 26 C 1.39330 * 120.12228 * 136.62676 * 25 24 23 27 27 C 1.38022 * 119.88351 * 179.71794 * 26 25 24 28 28 C 1.38315 * 120.11368 * 0.55687 * 27 26 25 29 29 C 1.38324 * 120.24797 * 359.71958 * 28 27 26 30 30 C 1.38022 * 120.11340 * 0.02562 * 29 28 27 31 31 H 1.09000 * 109.47010 * 186.03774 * 1 2 3 32 32 H 1.09007 * 109.47258 * 306.03311 * 1 2 3 33 33 H 1.09003 * 109.47374 * 66.03471 * 1 2 3 34 34 H 0.96702 * 114.00101 * 59.99658 * 4 2 1 35 35 H 1.09004 * 109.46819 * 175.00012 * 7 5 2 36 36 H 1.09000 * 109.47261 * 294.99739 * 7 5 2 37 37 H 0.96703 * 113.99663 * 179.97438 * 8 7 5 38 38 H 1.00893 * 110.99812 * 27.77922 * 9 5 2 39 39 H 1.08997 * 109.47297 * 304.85172 * 10 9 5 40 40 H 1.09007 * 109.47145 * 64.85491 * 10 9 5 41 41 H 1.07997 * 126.01424 * 359.95826 * 12 11 10 42 42 H 1.08992 * 109.46905 * 245.00014 * 14 13 12 43 43 H 1.09004 * 109.47229 * 5.00315 * 14 13 12 44 44 H 0.97002 * 119.99391 * 179.97438 * 18 17 15 45 45 H 1.08009 * 120.05492 * 359.97438 * 26 25 24 46 46 H 1.08000 * 119.94315 * 180.27275 * 27 26 25 47 47 H 1.08007 * 119.87614 * 179.74005 * 28 27 26 48 48 H 1.07999 * 119.94183 * 180.02562 * 29 28 27 49 49 H 1.08001 * 120.05265 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0399 -0.7212 -1.2493 6 1 1.6561 -0.2221 -2.1391 7 6 3.5695 -0.6907 -1.2671 8 8 4.0711 -1.2405 -0.0472 9 7 1.5781 -2.1157 -1.2325 10 6 1.4362 -2.6397 -2.5975 11 6 0.8494 -4.0267 -2.5446 12 6 -0.4312 -4.3595 -2.8169 13 7 -0.5579 -5.6945 -2.6570 14 6 -1.7849 -6.4709 -2.8517 15 6 -1.5264 -7.5795 -3.8392 16 1 -0.5461 -7.6944 -4.2776 17 6 -2.5410 -8.4477 -4.1824 18 7 -3.7347 -8.3080 -3.6481 19 14 -2.2205 -9.8222 -5.4059 20 1 -1.7648 -11.0349 -4.6799 21 1 -3.4715 -10.1287 -6.1451 22 1 -1.1704 -9.3958 -6.3654 23 7 0.6874 -6.2077 -2.2726 24 6 1.5403 -5.2073 -2.2089 25 6 2.9754 -5.3053 -1.8437 26 6 3.9320 -4.6013 -2.5721 27 6 5.2647 -4.6914 -2.2245 28 6 5.6524 -5.4879 -1.1623 29 6 4.7077 -6.1936 -0.4392 30 6 3.3718 -6.1065 -0.7750 31 1 -0.3633 -1.0220 0.1081 32 1 -0.3634 0.6046 0.8311 33 1 -0.3634 0.4174 -0.9391 34 1 1.7210 -1.5953 1.2328 35 1 3.9349 -1.2797 -2.1084 36 1 3.9112 0.3393 -1.3692 37 1 5.0363 -1.2533 0.0109 38 1 0.7138 -2.2041 -0.7195 39 1 0.7766 -1.9877 -3.1703 40 1 2.4150 -2.6772 -3.0759 41 1 -1.2158 -3.6780 -3.1106 42 1 -2.0992 -6.8984 -1.8996 43 1 -2.5704 -5.8193 -3.2344 44 1 -4.4486 -8.9185 -3.8897 45 1 3.6306 -3.9828 -3.4047 46 1 6.0065 -4.1426 -2.7857 47 1 6.6968 -5.5590 -0.8962 48 1 5.0159 -6.8138 0.3895 49 1 2.6349 -6.6576 -0.2095 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419813359.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:07 Heat of formation + Delta-G solvation = 2.161634 kcal Electronic energy + Delta-G solvation = -30780.003209 eV Core-core repulsion = 26708.561643 eV Total energy + Delta-G solvation = -4071.441566 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.63262 -38.93870 -38.52200 -35.98370 -35.14400 -33.77023 -32.32588 -31.52036 -30.63045 -30.14224 -29.56879 -28.29661 -26.92526 -24.54978 -23.66441 -23.23137 -22.24304 -21.65636 -20.41449 -19.88167 -19.27435 -17.40667 -17.08696 -16.69859 -16.40047 -15.84437 -15.79368 -15.19655 -14.96711 -14.69761 -14.50065 -14.26243 -14.00783 -13.84101 -13.73653 -13.31504 -13.26736 -13.13654 -12.83382 -12.58554 -12.48561 -12.29564 -12.20415 -12.10120 -11.76772 -11.59182 -11.25146 -11.02434 -10.94629 -10.88998 -10.82981 -10.69108 -10.29318 -10.02147 -9.91693 -9.75414 -9.58789 -8.98066 -8.66625 -8.64902 -8.31982 -8.15677 -7.59859 -6.29547 -4.34747 1.48978 1.70063 2.66735 3.21343 3.22515 3.27446 3.31735 3.47986 4.10043 4.20631 4.27908 4.35629 4.46295 4.70225 4.85359 4.96236 4.99807 5.06903 5.13338 5.17023 5.22160 5.28879 5.34460 5.42276 5.43877 5.48951 5.56497 5.63350 5.66740 5.69092 5.80621 5.81667 5.91038 6.00230 6.15416 6.23104 6.34247 6.49797 6.64586 6.74330 6.77527 6.94344 7.02719 7.06141 7.22269 7.33083 7.42210 7.64704 7.81092 7.82846 7.83387 7.92772 8.51909 8.74278 9.31487 10.79385 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010937 B = 0.003245 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.532450 B = 8626.445966 C =10454.138401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.109 3.891 3 H 0.094 0.906 4 O -0.539 6.539 5 C 0.051 3.949 6 H 0.059 0.941 7 C 0.097 3.903 8 O -0.534 6.534 9 N -0.666 5.666 10 C 0.146 3.854 11 C -0.251 4.251 12 C 0.053 3.947 13 N -0.321 5.321 14 C 0.256 3.744 15 C -0.530 4.530 16 H 0.069 0.931 17 C 0.063 3.937 18 N -0.895 5.895 19 Si 0.908 3.092 20 H -0.277 1.277 21 H -0.284 1.284 22 H -0.272 1.272 23 N -0.265 5.265 24 C 0.094 3.906 25 C 0.025 3.975 26 C -0.094 4.094 27 C -0.122 4.122 28 C -0.125 4.125 29 C -0.121 4.121 30 C -0.094 4.094 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.378 0.622 35 H 0.040 0.960 36 H 0.033 0.967 37 H 0.362 0.638 38 H 0.338 0.662 39 H 0.028 0.972 40 H 0.074 0.926 41 H 0.162 0.838 42 H 0.046 0.954 43 H 0.054 0.946 44 H 0.268 0.732 45 H 0.117 0.883 46 H 0.115 0.885 47 H 0.114 0.886 48 H 0.118 0.882 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.975 16.588 4.674 22.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.049 3.951 3 H 0.111 0.889 4 O -0.344 6.344 5 C -0.059 4.059 6 H 0.077 0.923 7 C 0.018 3.982 8 O -0.336 6.336 9 N -0.300 5.300 10 C 0.017 3.983 11 C -0.264 4.264 12 C -0.097 4.097 13 N -0.100 5.100 14 C 0.139 3.861 15 C -0.568 4.568 16 H 0.087 0.913 17 C -0.140 4.140 18 N -0.533 5.533 19 Si 0.735 3.265 20 H -0.202 1.202 21 H -0.210 1.210 22 H -0.197 1.197 23 N -0.089 5.089 24 C -0.069 4.069 25 C 0.023 3.977 26 C -0.113 4.113 27 C -0.141 4.141 28 C -0.144 4.144 29 C -0.139 4.139 30 C -0.114 4.114 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.226 0.774 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.207 0.793 38 H 0.159 0.841 39 H 0.046 0.954 40 H 0.092 0.908 41 H 0.179 0.821 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.135 0.865 46 H 0.133 0.867 47 H 0.133 0.867 48 H 0.136 0.864 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 13.645 15.387 5.110 21.191 hybrid contribution -0.641 0.113 -1.532 1.664 sum 13.004 15.500 3.578 20.546 Atomic orbital electron populations 1.22619 0.97147 1.02784 1.02601 1.21856 0.91859 0.96214 0.85157 0.88859 1.86534 1.77180 1.29079 1.41583 1.22403 0.95036 0.90282 0.98193 0.92350 1.21968 0.93302 0.95406 0.87566 1.86753 1.24286 1.85311 1.37280 1.60500 1.36813 1.16822 1.15835 1.20159 0.99070 0.90475 0.88608 1.19569 0.93396 0.95065 1.18338 1.22224 0.97777 0.87185 1.02551 1.49388 1.09266 1.04746 1.46581 1.19758 0.76343 0.91353 0.98642 1.21234 0.97952 1.12705 1.24901 0.91270 1.24937 0.94662 0.97788 0.96589 1.69919 1.01920 1.38166 1.43310 0.86320 0.77727 0.81698 0.80754 1.20230 1.20959 1.19673 1.77689 0.89701 1.21281 1.20209 1.20429 0.93090 0.91107 1.02322 1.17705 0.88694 0.96343 0.94928 1.21002 0.92315 0.98887 0.99134 1.20890 0.95486 0.99802 0.97874 1.21037 0.98957 0.97936 0.96426 1.20988 0.92971 0.99963 0.99939 1.21196 0.95931 0.97639 0.96594 0.91927 0.91615 0.91916 0.77447 0.94178 0.94855 0.79319 0.84132 0.95419 0.90826 0.82066 0.93604 0.92779 0.92283 0.86460 0.86663 0.86748 0.86431 0.86078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.63 9.20 37.16 0.34 -1.29 16 2 C 0.11 1.04 3.34 -26.73 -0.09 0.95 16 3 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 4 O -0.54 -6.45 11.23 -57.71 -0.65 -7.09 16 5 C 0.05 0.49 2.35 -67.71 -0.16 0.33 16 6 H 0.06 0.51 7.67 -51.93 -0.40 0.11 16 7 C 0.10 0.92 6.83 37.16 0.25 1.18 16 8 O -0.53 -5.88 11.43 -57.71 -0.66 -6.54 16 9 N -0.67 -7.65 5.74 -107.99 -0.62 -8.27 16 10 C 0.15 1.85 5.60 -4.98 -0.03 1.82 16 11 C -0.25 -4.16 5.55 -104.76 -0.58 -4.74 16 12 C 0.05 0.95 11.33 -17.26 -0.20 0.76 16 13 N -0.32 -7.09 3.67 -62.58 -0.23 -7.32 16 14 C 0.26 6.36 6.26 -5.19 -0.03 6.32 16 15 C -0.53 -14.57 9.23 -34.44 -0.32 -14.88 16 16 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -25.07 13.29 55.43 0.74 -24.34 16 19 Si 0.91 21.30 29.54 -169.99 -5.02 16.28 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 N -0.27 -5.99 12.44 33.43 0.42 -5.57 16 24 C 0.09 1.79 6.66 -82.78 -0.55 1.23 16 25 C 0.03 0.42 5.73 -104.90 -0.60 -0.18 16 26 C -0.09 -1.33 8.84 -39.25 -0.35 -1.67 16 27 C -0.12 -1.47 10.03 -39.63 -0.40 -1.86 16 28 C -0.13 -1.47 10.04 -39.52 -0.40 -1.87 16 29 C -0.12 -1.58 10.03 -39.63 -0.40 -1.98 16 30 C -0.09 -1.50 9.78 -39.26 -0.38 -1.88 16 31 H 0.06 0.56 6.50 -51.93 -0.34 0.22 16 32 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.38 4.40 8.25 45.56 0.38 4.77 16 35 H 0.04 0.39 7.68 -51.93 -0.40 -0.01 16 36 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.36 2.78 9.12 45.56 0.42 3.19 16 38 H 0.34 3.96 5.99 -39.30 -0.24 3.73 16 39 H 0.03 0.32 7.92 -51.93 -0.41 -0.09 16 40 H 0.07 0.92 5.22 -51.92 -0.27 0.65 16 41 H 0.16 2.38 8.06 -52.49 -0.42 1.96 16 42 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.05 1.31 8.07 -51.93 -0.42 0.90 16 44 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.12 1.55 6.30 -52.48 -0.33 1.22 16 46 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 47 H 0.11 1.05 8.06 -52.48 -0.42 0.63 16 48 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 49 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 404.78 15.07 6.10 6.10 Total: -1.00 -31.43 404.78 -9.69 -41.12 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -5.78 Total: 11.77 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: -3.98 Total: -16.14 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.30 Total: -45.50 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: -1.31 Total: -13.63 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.43 -9.69 -41.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419813359.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.283 kcal (2) G-P(sol) polarization free energy of solvation -31.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds