Wall clock time and date at job start Wed Apr 1 2020 03:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35978 * 116.99817 * 2 1 4 4 C 1.38541 * 120.08206 * 359.95579 * 3 2 1 5 5 C 1.38248 * 120.01177 * 180.02562 * 4 3 2 6 6 C 1.38276 * 120.18084 * 0.02562 * 5 4 3 7 7 C 1.38199 * 120.16552 * 0.02562 * 6 5 4 8 8 C 1.38725 * 119.98000 * 359.97438 * 7 6 5 9 9 N 1.40119 * 120.08874 * 180.02562 * 8 7 6 10 10 C 1.46500 * 120.00241 * 264.71805 * 9 8 7 11 11 C 1.53000 * 109.47175 * 94.61096 * 10 9 8 12 12 C 1.47194 * 109.47079 * 184.87387 * 11 10 9 13 13 N 6.49772 * 138.81855 * 254.48667 * 2 1 3 14 14 C 1.34779 * 119.99868 * 84.71809 * 9 8 7 15 15 O 1.21298 * 119.99809 * 184.32611 * 14 9 8 16 16 C 1.50700 * 120.00375 * 4.32147 * 14 9 8 17 17 H 1.09000 * 109.46898 * 321.43847 * 16 14 9 18 18 C 1.53000 * 109.46736 * 81.43727 * 16 14 9 19 19 N 1.46896 * 109.47082 * 201.43916 * 16 14 9 20 20 C 1.46905 * 110.99824 * 155.00240 * 19 16 14 21 21 H 1.09000 * 109.47047 * 34.99476 * 20 19 16 22 22 C 1.52996 * 109.46735 * 274.99920 * 20 19 16 23 23 C 1.50698 * 109.47438 * 154.99881 * 20 19 16 24 24 H 1.08001 * 119.99851 * 4.80258 * 23 20 19 25 25 C 1.37875 * 120.00283 * 184.80754 * 23 20 19 26 26 N 1.31519 * 119.99793 * 6.63916 * 25 23 20 27 27 Si 1.86793 * 120.00068 * 186.63896 * 25 23 20 28 28 H 1.48498 * 109.47138 * 94.99221 * 27 25 23 29 29 H 1.48507 * 109.47158 * 214.98809 * 27 25 23 30 30 H 1.48497 * 109.47425 * 334.99044 * 27 25 23 31 31 H 1.08996 * 109.47348 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47240 * 299.99905 * 1 2 3 33 33 H 1.08998 * 109.47217 * 59.99585 * 1 2 3 34 34 H 1.07998 * 119.99682 * 0.02562 * 4 3 2 35 35 H 1.08004 * 119.91063 * 180.27514 * 5 4 3 36 36 H 1.07999 * 119.92152 * 179.97438 * 6 5 4 37 37 H 1.07992 * 120.00899 * 180.02562 * 7 6 5 38 38 H 1.09001 * 109.47625 * 214.61108 * 10 9 8 39 39 H 1.09001 * 109.47161 * 334.61266 * 10 9 8 40 40 H 1.08997 * 109.47129 * 304.87482 * 11 10 9 41 41 H 1.09005 * 109.46775 * 64.87250 * 11 10 9 42 42 H 1.09002 * 109.46666 * 181.40760 * 18 16 14 43 43 H 1.09004 * 109.47200 * 301.39998 * 18 16 14 44 44 H 1.08994 * 109.47408 * 61.40881 * 18 16 14 45 45 H 1.00899 * 110.99994 * 278.94986 * 19 16 14 46 46 H 1.08997 * 109.47587 * 64.70473 * 22 20 19 47 47 H 1.09008 * 109.47066 * 184.70345 * 22 20 19 48 48 H 1.09001 * 109.47107 * 304.70159 * 22 20 19 49 49 H 0.96997 * 119.99612 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2934 2.3746 -0.0009 5 6 1.9225 3.6056 -0.0015 6 6 3.3032 3.6807 -0.0016 7 6 4.0615 2.5253 -0.0018 8 6 3.4373 1.2864 -0.0012 9 7 4.2039 0.1136 -0.0008 10 6 4.5068 -0.5640 -1.2639 11 6 5.8701 -0.0978 -1.7786 12 6 6.1226 -0.6882 -3.1031 13 7 6.3194 -1.1443 -4.1225 14 6 4.6626 -0.3913 1.1616 15 8 5.3910 -1.3612 1.1561 16 6 4.2707 0.2493 2.4682 17 1 4.2511 1.3327 2.3502 18 6 2.8826 -0.2439 2.8818 19 7 5.2477 -0.1130 3.5036 20 6 5.2783 0.8932 4.5736 21 1 4.2747 1.2891 4.7288 22 6 6.2199 2.0317 4.1761 23 6 5.7698 0.2565 5.8480 24 1 6.1065 -0.7697 5.8440 25 6 5.7896 0.9839 7.0190 26 7 5.2599 2.1872 7.0547 27 14 6.5687 0.2605 8.5549 28 1 7.9763 0.7218 8.6602 29 1 5.8108 0.7066 9.7515 30 1 6.5384 -1.2220 8.4741 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 0.2148 2.3195 -0.0012 35 1 1.3339 4.5112 0.0023 36 1 3.7903 4.6446 -0.0024 37 1 5.1396 2.5869 -0.0015 38 1 4.5288 -1.6417 -1.1020 39 1 3.7390 -0.3226 -1.9990 40 1 5.8760 0.9893 -1.8583 41 1 6.6484 -0.4155 -1.0847 42 1 2.5886 0.2385 3.8140 43 1 2.1621 0.0030 2.1020 44 1 2.9083 -1.3242 3.0240 45 1 5.0564 -1.0310 3.8759 46 1 5.8199 2.5457 3.3022 47 1 6.3077 2.7361 5.0034 48 1 7.2030 1.6245 3.9399 49 1 5.2742 2.6991 7.8785 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602862804.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:49 Heat of formation + Delta-G solvation = -26.914492 kcal Electronic energy + Delta-G solvation = -31448.078429 eV Core-core repulsion = 27375.376027 eV Total energy + Delta-G solvation = -4072.702401 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.93216 -40.37683 -38.45212 -38.08330 -37.63967 -36.43269 -34.89091 -33.12440 -31.94303 -31.13280 -30.23569 -28.68975 -28.02662 -27.22363 -26.28644 -24.32882 -23.46406 -23.01853 -21.60957 -20.56628 -19.20740 -18.70311 -18.59135 -17.88418 -17.42761 -17.13520 -16.76858 -16.55493 -16.08022 -16.05468 -15.77568 -15.55882 -15.25380 -15.07688 -14.74955 -14.64765 -14.51827 -14.26776 -13.77247 -13.71781 -13.58702 -13.47255 -13.39927 -13.29285 -12.99507 -12.91094 -12.79209 -12.59675 -12.50303 -12.42971 -12.30389 -12.20336 -12.07537 -11.90415 -11.83965 -11.82061 -10.95215 -10.80645 -10.51243 -10.01342 -9.74860 -9.11029 -8.96868 -8.13019 -6.21852 0.27855 0.51352 1.43315 1.45675 1.51902 1.55563 1.69131 1.76678 1.94459 2.39007 2.45204 2.78096 3.08610 3.18872 3.46946 3.76687 3.95537 4.02115 4.05679 4.09669 4.16109 4.26122 4.35239 4.43230 4.45835 4.46758 4.56718 4.64099 4.73623 4.74606 4.81652 4.83954 4.86830 4.89609 4.95150 5.09248 5.18012 5.23279 5.35329 5.37126 5.47470 5.54047 5.63346 5.70464 5.84681 5.87920 6.19363 6.25863 6.46513 6.52042 6.59159 6.79983 7.01017 7.23310 7.47308 8.95220 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010477 B = 0.003471 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.841397 B = 8063.819612 C = 9181.832757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.326 6.326 3 C 0.122 3.878 4 C -0.205 4.205 5 C -0.071 4.071 6 C -0.150 4.150 7 C -0.083 4.083 8 C 0.072 3.928 9 N -0.554 5.554 10 C 0.131 3.869 11 C -0.037 4.037 12 C 0.244 3.756 13 N -0.487 5.487 14 C 0.540 3.460 15 O -0.548 6.548 16 C 0.076 3.924 17 H 0.093 0.907 18 C -0.162 4.162 19 N -0.673 5.673 20 C 0.222 3.778 21 H -0.015 1.015 22 C -0.108 4.108 23 C -0.538 4.538 24 H 0.053 0.947 25 C 0.021 3.979 26 N -0.913 5.913 27 Si 0.953 3.047 28 H -0.277 1.277 29 H -0.282 1.282 30 H -0.271 1.271 31 H 0.109 0.891 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.148 0.852 37 H 0.140 0.860 38 H 0.078 0.922 39 H 0.102 0.898 40 H 0.137 0.863 41 H 0.112 0.888 42 H 0.052 0.948 43 H 0.082 0.918 44 H 0.052 0.948 45 H 0.334 0.666 46 H 0.030 0.970 47 H 0.044 0.956 48 H 0.029 0.971 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.342 4.626 -17.223 21.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.240 6.240 3 C 0.075 3.925 4 C -0.224 4.224 5 C -0.089 4.089 6 C -0.168 4.168 7 C -0.102 4.102 8 C -0.019 4.019 9 N -0.283 5.283 10 C 0.008 3.992 11 C -0.078 4.078 12 C -0.073 4.073 13 N -0.165 5.165 14 C 0.329 3.671 15 O -0.424 6.424 16 C -0.038 4.038 17 H 0.111 0.889 18 C -0.221 4.221 19 N -0.304 5.304 20 C 0.114 3.886 21 H 0.003 0.997 22 C -0.166 4.166 23 C -0.576 4.576 24 H 0.071 0.929 25 C -0.179 4.179 26 N -0.552 5.552 27 Si 0.779 3.221 28 H -0.203 1.203 29 H -0.208 1.208 30 H -0.196 1.196 31 H 0.127 0.873 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.170 0.830 35 H 0.171 0.829 36 H 0.166 0.834 37 H 0.158 0.842 38 H 0.097 0.903 39 H 0.120 0.880 40 H 0.155 0.845 41 H 0.131 0.869 42 H 0.071 0.929 43 H 0.101 0.899 44 H 0.072 0.928 45 H 0.152 0.848 46 H 0.049 0.951 47 H 0.063 0.937 48 H 0.048 0.952 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.058 3.600 -18.954 22.237 hybrid contribution -0.604 -0.261 1.933 2.042 sum -11.662 3.339 -17.021 20.901 Atomic orbital electron populations 1.23331 0.76715 1.05222 1.02454 1.86152 1.23097 1.26571 1.88161 1.19415 0.91317 0.85507 0.96236 1.21467 1.01248 0.91552 1.08147 1.21410 0.94825 0.97908 0.94772 1.21296 0.94205 0.98667 1.02648 1.21458 1.01211 0.90667 0.96902 1.17045 0.86995 0.86331 1.11479 1.45049 1.52293 1.25168 1.05798 1.21314 0.95315 0.97907 0.84639 1.19755 1.00121 1.02948 0.84998 1.29072 0.91910 0.92105 0.94228 1.81164 1.10167 1.11028 1.14136 1.20842 0.78164 0.82875 0.85217 1.90646 1.36358 1.28041 1.87315 1.21369 0.91673 1.00242 0.90526 0.88936 1.22284 0.96520 1.01122 1.02174 1.60405 1.49557 1.05957 1.14433 1.18894 0.93352 0.89272 0.87085 0.99739 1.21495 0.98642 0.98317 0.98172 1.21531 1.43432 0.98665 0.93967 0.92909 1.25585 0.95459 0.95453 1.01366 1.70047 1.44723 1.12187 1.28280 0.85617 0.78569 0.78744 0.79128 1.20308 1.20800 1.19604 0.87251 0.91910 0.90902 0.82996 0.82893 0.83386 0.84222 0.90322 0.87951 0.84511 0.86949 0.92864 0.89905 0.92841 0.84775 0.95147 0.93680 0.95162 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.31 16 2 O -0.33 -6.29 8.83 -93.31 -0.82 -7.11 16 3 C 0.12 2.34 5.41 22.60 0.12 2.46 16 4 C -0.21 -3.02 9.04 22.34 0.20 -2.82 16 5 C -0.07 -0.95 10.04 22.28 0.22 -0.73 16 6 C -0.15 -2.24 10.04 22.27 0.22 -2.02 16 7 C -0.08 -1.53 9.31 22.38 0.21 -1.32 16 8 C 0.07 1.52 3.59 38.19 0.14 1.65 16 9 N -0.55 -13.24 2.27 -630.78 -1.43 -14.67 16 10 C 0.13 2.57 5.28 86.38 0.46 3.02 16 11 C -0.04 -0.62 6.00 28.79 0.17 -0.44 16 12 C 0.24 5.08 15.43 89.46 1.38 6.46 16 13 N -0.49 -12.99 18.52 19.98 0.37 -12.62 16 14 C 0.54 17.54 6.85 87.66 0.60 18.14 16 15 O -0.55 -21.25 16.28 -3.08 -0.05 -21.30 16 16 C 0.08 2.68 2.12 44.17 0.09 2.78 16 17 H 0.09 3.28 5.75 -2.39 -0.01 3.26 16 18 C -0.16 -5.27 9.09 71.98 0.65 -4.62 16 19 N -0.67 -29.35 5.63 -477.17 -2.69 -32.04 16 20 C 0.22 11.02 2.29 44.17 0.10 11.13 16 21 H -0.01 -0.81 7.10 -2.39 -0.02 -0.82 16 22 C -0.11 -5.12 9.25 71.98 0.67 -4.45 16 23 C -0.54 -29.46 8.50 25.60 0.22 -29.25 16 24 H 0.05 2.92 7.67 -2.91 -0.02 2.90 16 25 C 0.02 1.16 5.21 84.65 0.44 1.60 16 26 N -0.91 -51.32 11.98 21.45 0.26 -51.07 16 27 Si 0.95 43.40 29.54 68.60 2.03 45.43 16 28 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 29 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 30 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 31 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 0.64 7.67 -2.39 -0.02 0.62 16 33 H 0.07 0.55 7.66 -2.39 -0.02 0.53 16 34 H 0.15 1.50 6.30 -2.91 -0.02 1.48 16 35 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 36 H 0.15 1.63 8.06 -2.91 -0.02 1.60 16 37 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 38 H 0.08 1.78 7.63 -2.39 -0.02 1.76 16 39 H 0.10 1.63 8.01 -2.39 -0.02 1.61 16 40 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 42 H 0.05 1.90 7.44 -2.39 -0.02 1.88 16 43 H 0.08 2.30 4.86 -2.39 -0.01 2.29 16 44 H 0.05 1.76 8.11 -2.39 -0.02 1.74 16 45 H 0.33 15.19 7.98 -89.69 -0.72 14.47 16 46 H 0.03 1.24 7.49 -2.39 -0.02 1.23 16 47 H 0.04 2.33 6.63 -2.38 -0.02 2.31 16 48 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -70.69 406.95 4.93 -65.75 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.26 Total: 24.72 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 7.01 Total: 2.90 kcal Atomic # 7 Polarization: -106.91 SS G_CDS: -3.49 Total: -110.40 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.87 Total: -28.41 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -70.69 4.93 -65.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602862804.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.840 kcal (2) G-P(sol) polarization free energy of solvation -70.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds