Wall clock time and date at job start Wed Apr 1 2020 03:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47012 * 2 1 4 4 O 1.42901 * 109.47238 * 239.99517 * 2 1 3 5 5 C 1.53005 * 109.46664 * 119.99803 * 2 1 3 6 6 N 1.46898 * 109.46863 * 185.00031 * 5 2 1 7 7 C 1.46897 * 110.99879 * 188.95444 * 6 5 2 8 8 N 1.36608 * 111.00105 * 65.00151 * 6 5 2 9 9 C 1.34771 * 120.00050 * 239.99882 * 8 6 5 10 10 O 1.21675 * 119.99832 * 0.02562 * 9 8 6 11 11 C 1.46907 * 120.00278 * 179.97438 * 9 8 6 12 12 C 1.36382 * 126.76628 * 359.97438 * 11 9 8 13 13 N 1.35474 * 109.76786 * 180.02562 * 12 11 9 14 14 C 1.46498 * 124.78505 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.46841 * 264.99438 * 14 13 12 16 16 C 1.50701 * 109.47056 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00107 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99886 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00290 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00164 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47146 * 60.00086 * 20 18 16 22 22 H 1.48499 * 109.47734 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47348 * 300.00280 * 20 18 16 24 24 C 1.37962 * 110.42658 * 359.97438 * 13 12 11 25 25 C 1.39122 * 133.19056 * 179.97438 * 24 13 12 26 26 C 1.37764 * 119.93365 * 180.02562 * 25 24 13 27 27 C 1.38753 * 120.63243 * 359.97438 * 26 25 24 28 28 C 1.37755 * 120.30240 * 0.02562 * 27 26 25 29 29 C 1.39277 * 119.67283 * 0.02562 * 28 27 26 30 30 H 1.08999 * 109.47481 * 300.00607 * 1 2 3 31 31 H 1.09004 * 109.46515 * 59.99992 * 1 2 3 32 32 H 1.08996 * 109.47470 * 179.97438 * 1 2 3 33 33 H 0.96691 * 114.00015 * 300.00329 * 4 2 1 34 34 H 1.08995 * 109.46948 * 65.00348 * 5 2 1 35 35 H 1.09001 * 109.47236 * 304.99942 * 5 2 1 36 36 H 1.09005 * 109.47131 * 296.04168 * 7 6 5 37 37 H 1.09002 * 109.47142 * 56.04724 * 7 6 5 38 38 H 1.09005 * 109.47153 * 176.05209 * 7 6 5 39 39 H 0.96995 * 119.99636 * 59.99537 * 8 6 5 40 40 H 1.07998 * 125.11426 * 0.02562 * 12 11 9 41 41 H 1.08997 * 109.47563 * 24.98976 * 14 13 12 42 42 H 1.09001 * 109.47090 * 144.99590 * 14 13 12 43 43 H 1.09001 * 109.47116 * 300.00267 * 15 14 13 44 44 H 1.09001 * 109.47155 * 60.00191 * 15 14 13 45 45 H 0.97000 * 120.00967 * 179.97438 * 19 18 16 46 46 H 1.08003 * 120.03471 * 359.97438 * 25 24 13 47 47 H 1.07992 * 119.68366 * 179.97438 * 26 25 24 48 48 H 1.07998 * 119.85023 * 179.97438 * 27 26 25 49 49 H 1.08002 * 120.16856 * 179.72194 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0399 -0.7213 1.2493 6 7 3.5039 -0.6176 1.3113 7 6 4.0477 -1.4726 2.3748 8 7 3.8962 0.6803 1.4779 9 6 4.6825 1.2703 0.5560 10 8 5.0425 0.6471 -0.4251 11 6 5.1039 2.6662 0.7349 12 6 4.7827 3.4891 1.7739 13 7 5.3553 4.7032 1.5908 14 6 5.2250 5.8359 2.5106 15 6 4.0849 6.7432 2.0441 16 6 3.9505 7.9082 2.9906 17 1 4.6123 7.9932 3.8397 18 6 2.9825 8.8655 2.7725 19 7 2.1768 8.7623 1.7382 20 14 2.8154 10.3091 3.9461 21 1 4.0844 11.0802 3.9662 22 1 1.7088 11.1898 3.4933 23 1 2.5206 9.8054 5.3117 24 6 6.0792 4.7219 0.4165 25 6 6.8376 5.6999 -0.2190 26 6 7.4602 5.4177 -1.4151 27 6 7.3396 4.1636 -1.9963 28 6 6.5930 3.1820 -1.3825 29 6 5.9574 3.4538 -0.1735 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7210 -1.5952 -1.2328 34 1 1.7516 -1.7715 1.2056 35 1 1.6053 -0.2617 2.1370 36 1 3.6898 -1.1208 3.3425 37 1 3.7200 -2.5004 2.2180 38 1 5.1367 -1.4311 2.3533 39 1 3.6089 1.1771 2.2598 40 1 4.1649 3.2142 2.6160 41 1 5.0086 5.4670 3.5132 42 1 6.1568 6.4014 2.5248 43 1 4.3012 7.1122 1.0415 44 1 3.1531 6.1778 2.0299 45 1 1.4955 9.4355 1.5849 46 1 6.9376 6.6795 0.2246 47 1 8.0476 6.1800 -1.9051 48 1 7.8327 3.9562 -2.9345 49 1 6.4970 2.2079 -1.8390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000910154245.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:53 Heat of formation + Delta-G solvation = 2.406034 kcal Electronic energy + Delta-G solvation = -30319.879283 eV Core-core repulsion = 26248.448315 eV Total energy + Delta-G solvation = -4071.430968 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.20139 -39.72851 -37.71408 -36.84126 -36.26197 -34.07322 -32.52770 -31.93427 -31.08102 -30.39180 -28.84003 -28.38575 -27.38992 -25.35551 -24.05949 -22.63775 -22.25444 -21.76848 -21.35406 -20.37575 -19.57849 -17.83585 -17.15992 -16.64920 -16.35385 -16.16640 -15.69949 -15.49914 -15.18223 -15.14032 -14.86629 -14.41325 -14.23596 -13.93509 -13.63171 -13.47400 -13.35473 -13.16625 -12.89418 -12.76605 -12.61265 -12.46561 -12.31817 -12.13357 -11.98202 -11.80021 -11.37302 -11.20779 -11.09144 -10.95458 -10.73468 -10.58851 -10.30820 -10.11051 -9.93038 -9.54284 -9.46749 -9.18591 -9.16513 -8.88028 -8.57371 -7.91697 -7.30718 -6.21039 -4.27908 1.32450 1.91321 2.38970 2.69509 3.16262 3.19868 3.26172 3.28204 3.77595 4.03471 4.28359 4.32246 4.38493 4.69098 4.84982 4.91047 5.00745 5.01701 5.03680 5.10361 5.14778 5.16503 5.19168 5.23451 5.37744 5.48945 5.50351 5.58540 5.60300 5.75864 5.86812 5.88731 5.97825 5.98165 6.02693 6.04855 6.34657 6.40531 6.52409 6.76487 6.92612 6.99458 7.05888 7.31552 7.36052 7.39046 7.52056 7.55726 7.65565 7.72129 7.76820 8.08486 8.77665 8.80637 9.38158 10.89589 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008869 B = 0.003138 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3156.453733 B = 8919.421267 C =10755.424140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.109 3.891 3 H 0.098 0.902 4 O -0.539 6.539 5 C 0.004 3.996 6 N -0.285 5.285 7 C 0.007 3.993 8 N -0.589 5.589 9 C 0.611 3.389 10 O -0.510 6.510 11 C -0.249 4.249 12 C 0.119 3.881 13 N -0.450 5.450 14 C 0.101 3.899 15 C 0.012 3.988 16 C -0.533 4.533 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.887 5.887 20 Si 0.897 3.103 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.276 1.276 24 C 0.092 3.908 25 C -0.114 4.114 26 C -0.109 4.109 27 C -0.146 4.146 28 C -0.071 4.071 29 C -0.060 4.060 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.365 0.635 34 H 0.089 0.911 35 H 0.049 0.951 36 H 0.031 0.969 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.375 0.625 40 H 0.168 0.832 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.026 0.974 44 H 0.022 0.978 45 H 0.265 0.735 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.119 0.881 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.793 -17.951 0.706 18.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.049 3.951 3 H 0.116 0.884 4 O -0.342 6.342 5 C -0.125 4.125 6 N -0.101 5.101 7 C -0.142 4.142 8 N -0.337 5.337 9 C 0.401 3.599 10 O -0.383 6.383 11 C -0.262 4.262 12 C -0.017 4.017 13 N -0.127 5.127 14 C -0.018 4.018 15 C -0.025 4.025 16 C -0.571 4.571 17 H 0.077 0.923 18 C -0.140 4.140 19 N -0.525 5.525 20 Si 0.724 3.276 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.013 4.013 25 C -0.134 4.134 26 C -0.129 4.129 27 C -0.165 4.165 28 C -0.090 4.090 29 C -0.064 4.064 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.211 0.789 34 H 0.107 0.893 35 H 0.067 0.933 36 H 0.050 0.950 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.213 0.787 40 H 0.185 0.815 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.044 0.956 44 H 0.041 0.959 45 H 0.074 0.926 46 H 0.141 0.859 47 H 0.140 0.860 48 H 0.137 0.863 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.368 -17.583 -0.446 17.748 hybrid contribution -1.263 0.833 2.258 2.718 sum 1.104 -16.750 1.813 16.884 Atomic orbital electron populations 1.22505 0.96299 1.02328 1.03188 1.21802 0.91899 0.97232 0.84125 0.88384 1.86778 1.76922 1.27963 1.42561 1.23445 0.87876 1.02082 0.99060 1.62775 1.09116 0.94368 1.43804 1.22914 1.01878 0.97337 0.92040 1.45294 1.54526 1.08024 1.25825 1.17023 0.76857 0.84381 0.81632 1.90753 1.54346 1.64732 1.28483 1.19693 1.12517 0.94203 0.99787 1.22014 0.96435 0.84609 0.98631 1.44342 1.38733 1.11207 1.18400 1.22459 1.02881 0.85367 0.91099 1.19448 0.91781 0.93534 0.97750 1.20942 1.17561 1.07607 1.11032 0.92329 1.24993 0.95428 0.98149 0.95401 1.69953 1.19417 1.35325 1.27782 0.86582 0.77894 0.82099 0.81013 1.20040 1.21100 1.20101 1.18259 0.98624 0.95933 0.88455 1.20131 0.99047 0.97887 0.96304 1.20749 1.00170 0.96944 0.95006 1.20882 1.01574 0.93553 1.00473 1.20582 0.95595 0.99529 0.93273 1.18644 1.00072 0.91998 0.95702 0.91639 0.91308 0.92395 0.78935 0.89281 0.93254 0.95012 0.90160 0.90469 0.78709 0.81511 0.89981 0.90147 0.95594 0.95917 0.92551 0.85883 0.86015 0.86289 0.85372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.57 9.53 37.16 0.35 -1.21 16 2 C 0.11 1.20 3.64 -26.73 -0.10 1.11 16 3 H 0.10 1.37 7.47 -51.93 -0.39 0.98 16 4 O -0.54 -6.97 13.29 -35.23 -0.47 -7.44 16 5 C 0.00 0.03 4.82 -3.82 -0.02 0.02 16 6 N -0.28 -3.25 4.52 -121.13 -0.55 -3.80 16 7 C 0.01 0.06 9.98 60.06 0.60 0.66 16 8 N -0.59 -7.30 4.01 30.31 0.12 -7.18 16 9 C 0.61 10.03 7.77 -12.75 -0.10 9.93 16 10 O -0.51 -10.20 16.48 5.21 0.09 -10.12 16 11 C -0.25 -4.16 6.27 -103.31 -0.65 -4.81 16 12 C 0.12 1.80 10.75 -16.61 -0.18 1.62 16 13 N -0.45 -7.83 2.74 -114.22 -0.31 -8.15 16 14 C 0.10 1.85 5.89 -4.04 -0.02 1.82 16 15 C 0.01 0.29 5.30 -27.88 -0.15 0.15 16 16 C -0.53 -13.76 9.11 -34.44 -0.31 -14.08 16 17 H 0.06 1.43 7.74 -52.49 -0.41 1.03 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -25.40 13.29 55.43 0.74 -24.66 16 20 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 24 C 0.09 1.68 6.79 -83.96 -0.57 1.11 16 25 C -0.11 -1.92 9.97 -39.43 -0.39 -2.32 16 26 C -0.11 -1.63 10.01 -39.56 -0.40 -2.03 16 27 C -0.15 -2.17 10.03 -39.57 -0.40 -2.57 16 28 C -0.07 -1.21 9.85 -39.37 -0.39 -1.60 16 29 C -0.06 -1.09 6.27 -104.95 -0.66 -1.75 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.36 3.08 9.04 45.56 0.41 3.49 16 34 H 0.09 0.61 8.03 -51.93 -0.42 0.20 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.08 0.55 8.06 -51.93 -0.42 0.13 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.37 3.68 7.71 -185.15 -1.43 2.26 16 40 H 0.17 1.86 7.38 -52.49 -0.39 1.47 16 41 H 0.08 1.33 8.11 -51.93 -0.42 0.91 16 42 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 43 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 46 H 0.12 2.01 8.06 -52.48 -0.42 1.59 16 47 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 48 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 49 H 0.13 2.19 7.45 -52.49 -0.39 1.80 16 LS Contribution 413.40 15.07 6.23 6.23 Total: -1.00 -34.43 413.40 -10.70 -45.14 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -8.05 Total: 7.00 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -3.47 Total: -12.35 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: 0.00 Total: -43.79 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.38 Total: -17.56 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.43 -10.70 -45.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910154245.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.542 kcal (2) G-P(sol) polarization free energy of solvation -34.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds