Wall clock time and date at job start Wed Apr 1 2020 03:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47205 * 2 1 4 4 C 1.53002 * 109.47217 * 240.00199 * 2 1 3 5 5 N 1.46504 * 109.46794 * 184.99706 * 4 2 1 6 6 C 1.46767 * 124.34486 * 89.99882 * 5 4 2 7 7 C 1.54487 * 105.47169 * 197.01393 * 6 5 4 8 8 C 1.54631 * 101.76291 * 334.58762 * 7 6 5 9 9 C 1.34413 * 124.34993 * 269.69966 * 5 4 2 10 10 O 1.21278 * 124.94496 * 359.57206 * 9 5 4 11 11 N 1.46499 * 109.47113 * 119.99558 * 2 1 3 12 12 C 1.34773 * 120.00232 * 275.00294 * 11 2 1 13 13 O 1.21587 * 119.99800 * 359.97438 * 12 11 2 14 14 N 1.34775 * 119.99744 * 179.97438 * 12 11 2 15 15 C 1.39949 * 119.99646 * 184.35812 * 14 12 11 16 16 C 1.38861 * 120.07490 * 324.67600 * 15 14 12 17 17 C 1.38116 * 119.93460 * 179.76834 * 16 15 14 18 18 C 1.38282 * 120.06346 * 0.50137 * 17 16 15 19 19 C 1.50701 * 119.93010 * 179.72358 * 18 17 16 20 20 C 1.50702 * 109.47243 * 270.02845 * 19 18 17 21 21 H 1.07999 * 119.99773 * 359.97438 * 20 19 18 22 22 C 1.37877 * 119.99949 * 179.97438 * 20 19 18 23 23 N 1.31511 * 119.99752 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99926 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47220 * 89.99866 * 24 22 20 26 26 H 1.48500 * 109.47072 * 210.00258 * 24 22 20 27 27 H 1.48506 * 109.47367 * 329.99698 * 24 22 20 28 28 C 1.38281 * 120.14265 * 359.75111 * 18 17 16 29 29 C 1.38112 * 120.06908 * 359.97438 * 28 18 17 30 30 H 1.08996 * 109.47572 * 300.00109 * 1 2 3 31 31 H 1.08999 * 109.47017 * 60.00629 * 1 2 3 32 32 H 1.08997 * 109.46798 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.46786 * 304.99273 * 4 2 1 34 34 H 1.08990 * 109.47466 * 65.00117 * 4 2 1 35 35 H 1.08992 * 110.25186 * 316.01370 * 6 5 4 36 36 H 1.09000 * 110.24743 * 77.93292 * 6 5 4 37 37 H 1.09000 * 110.96638 * 92.70034 * 7 6 5 38 38 H 1.09002 * 110.96927 * 216.46922 * 7 6 5 39 39 H 1.09002 * 110.48743 * 143.47660 * 8 7 6 40 40 H 1.09006 * 110.48483 * 265.98765 * 8 7 6 41 41 H 0.96999 * 119.99536 * 95.00293 * 11 2 1 42 42 H 0.96997 * 120.00177 * 4.64635 * 14 12 11 43 43 H 1.08007 * 120.02952 * 359.97438 * 16 15 14 44 44 H 1.07995 * 119.96824 * 180.25006 * 17 16 15 45 45 H 1.09000 * 109.46809 * 30.02562 * 19 18 17 46 46 H 1.08993 * 109.47191 * 150.02155 * 19 18 17 47 47 H 0.97003 * 119.99873 * 179.97438 * 23 22 20 48 48 H 1.08001 * 119.96506 * 180.02562 * 28 18 17 49 49 H 1.08002 * 120.03355 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8262 -1.1905 6 6 4.2258 -1.9486 -0.5842 7 6 5.6666 -1.4367 -0.3633 8 6 5.7780 -0.3338 -1.4414 9 6 4.3471 0.0902 -1.6901 10 8 4.0130 1.1097 -2.2555 11 7 2.0183 -0.6905 1.1962 12 6 2.1470 -0.0181 2.3571 13 8 1.8582 1.1617 2.4116 14 7 2.5958 -0.6536 3.4577 15 6 2.6432 0.0194 4.6838 16 6 2.9554 1.3719 4.7237 17 6 2.9966 2.0343 5.9349 18 6 2.7376 1.3497 7.1081 19 6 2.7895 2.0741 8.4285 20 6 4.1868 1.9990 8.9881 21 1 4.9598 1.4785 8.4422 22 6 4.4783 2.5950 10.1967 23 7 3.5371 3.2293 10.8610 24 14 6.2101 2.5014 10.8906 25 1 6.9996 3.6635 10.4095 26 1 6.1507 2.5232 12.3742 27 1 6.8567 1.2428 10.4397 28 6 2.4315 0.0016 7.0723 29 6 2.3831 -0.6651 5.8637 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6055 -1.7197 -1.2951 34 1 1.7518 -0.1583 -2.1369 35 1 3.7720 -2.2207 0.3686 36 1 4.2278 -2.8049 -1.2587 37 1 5.7827 -1.0180 0.6364 38 1 6.3936 -2.2294 -0.5396 39 1 6.3681 0.5042 -1.0703 40 1 6.2190 -0.7353 -2.3538 41 1 2.2491 -1.6317 1.1526 42 1 2.8898 -1.5761 3.3991 43 1 3.1625 1.9060 3.8080 44 1 3.2354 3.0871 5.9661 45 1 2.5127 3.1180 8.2814 46 1 2.0933 1.6085 9.1260 47 1 3.7421 3.6482 11.7116 48 1 2.2292 -0.5302 7.9903 49 1 2.1444 -1.7181 5.8365 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932581784.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:11 Heat of formation + Delta-G solvation = -38.748324 kcal Electronic energy + Delta-G solvation = -29785.921030 eV Core-core repulsion = 25712.705475 eV Total energy + Delta-G solvation = -4073.215555 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.03016 -40.33575 -38.46715 -36.98628 -36.14298 -34.75560 -33.21270 -32.73447 -31.15109 -30.25753 -29.93316 -28.03360 -26.73151 -26.48742 -23.57062 -22.48240 -22.35298 -22.07685 -20.93613 -20.20958 -19.84603 -18.61032 -17.44591 -17.18835 -16.84796 -16.33499 -16.22730 -15.46993 -15.27070 -14.90668 -14.67611 -14.32597 -14.28314 -14.19771 -13.91071 -13.83773 -13.44055 -13.11510 -13.02825 -12.80888 -12.78033 -12.52566 -12.50573 -12.25763 -11.98339 -11.93561 -11.56037 -11.45855 -11.32445 -11.25505 -10.82567 -10.58698 -10.39032 -10.16246 -10.11658 -9.84696 -9.48909 -9.40897 -9.23829 -9.05338 -8.39991 -8.24115 -7.34117 -6.01224 -4.05175 1.97873 2.11400 2.21471 2.43285 2.60138 3.18372 3.31896 3.37986 3.41693 3.88940 3.97440 4.00708 4.26424 4.38991 4.40896 4.52098 4.60273 4.61641 4.86815 4.89972 4.99905 5.08334 5.16020 5.25064 5.32679 5.36036 5.38727 5.45010 5.50731 5.60183 5.67377 5.86786 5.97732 6.08417 6.08972 6.12971 6.24112 6.27217 6.57173 6.65997 6.70914 6.98128 7.06257 7.21059 7.26269 7.55189 7.76305 7.78834 7.86763 7.91039 7.94624 8.35463 8.51942 9.00174 9.58327 11.08384 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015562 B = 0.002164 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.802379 B =12937.320727 C =13794.094819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.143 3.857 3 H 0.094 0.906 4 C 0.119 3.881 5 N -0.618 5.618 6 C 0.103 3.897 7 C -0.133 4.133 8 C -0.156 4.156 9 C 0.518 3.482 10 O -0.528 6.528 11 N -0.739 5.739 12 C 0.702 3.298 13 O -0.568 6.568 14 N -0.682 5.682 15 C 0.120 3.880 16 C -0.115 4.115 17 C -0.109 4.109 18 C -0.043 4.043 19 C 0.048 3.952 20 C -0.510 4.510 21 H 0.057 0.943 22 C 0.057 3.943 23 N -0.894 5.894 24 Si 0.895 3.105 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.274 1.274 28 C -0.109 4.109 29 C -0.145 4.145 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.389 0.611 42 H 0.399 0.601 43 H 0.128 0.872 44 H 0.120 0.880 45 H 0.029 0.971 46 H 0.028 0.972 47 H 0.262 0.738 48 H 0.121 0.879 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.778 -16.867 -26.475 31.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 H 0.112 0.888 4 C -0.004 4.004 5 N -0.353 5.353 6 C -0.020 4.020 7 C -0.171 4.171 8 C -0.196 4.196 9 C 0.306 3.694 10 O -0.404 6.404 11 N -0.396 5.396 12 C 0.402 3.598 13 O -0.444 6.444 14 N -0.329 5.329 15 C 0.027 3.973 16 C -0.135 4.135 17 C -0.128 4.128 18 C -0.043 4.043 19 C 0.011 3.989 20 C -0.548 4.548 21 H 0.075 0.925 22 C -0.144 4.144 23 N -0.533 5.533 24 Si 0.723 3.277 25 H -0.206 1.206 26 H -0.212 1.212 27 H -0.198 1.198 28 C -0.128 4.128 29 C -0.165 4.165 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.117 0.883 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.224 0.776 42 H 0.233 0.767 43 H 0.146 0.854 44 H 0.138 0.862 45 H 0.047 0.953 46 H 0.046 0.954 47 H 0.071 0.929 48 H 0.139 0.861 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.361 -15.131 -26.630 30.659 hybrid contribution 1.143 -1.079 0.508 1.652 sum -0.217 -16.210 -26.122 30.744 Atomic orbital electron populations 1.22151 0.94441 1.02224 1.03356 1.21284 0.94227 0.98152 0.82647 0.88758 1.21766 0.78495 1.01809 0.98308 1.48208 1.05802 1.22470 1.58804 1.22130 0.92448 0.89158 0.98248 1.22600 0.95828 0.98680 0.99945 1.22331 0.95150 1.00953 1.01142 1.20954 0.88673 0.82534 0.77277 1.90749 1.82122 1.24967 1.42562 1.45218 1.72289 1.13140 1.08992 1.15935 0.78376 0.85293 0.80162 1.90961 1.55864 1.13824 1.83720 1.42436 1.67710 1.15872 1.06859 1.17277 1.04272 0.92663 0.83060 1.21141 1.00449 0.93343 0.98608 1.21017 1.00258 1.00147 0.91339 1.20702 0.92706 0.93736 0.97201 1.18348 0.97631 0.95295 0.87646 1.21068 0.94713 1.34501 1.04534 0.92480 1.25018 0.97220 0.95278 0.96897 1.69960 1.32573 1.35640 1.15171 0.86542 0.84621 0.78516 0.78048 1.20607 1.21204 1.19840 1.20855 1.00883 0.94572 0.96476 1.20707 1.04707 0.99340 0.91759 0.91207 0.91349 0.92397 0.89685 0.88259 0.90841 0.90823 0.89698 0.88966 0.87862 0.87831 0.77598 0.76732 0.85385 0.86182 0.95323 0.95352 0.92871 0.86082 0.86983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.48 37.16 0.35 -0.91 16 2 C 0.14 1.23 2.88 -67.93 -0.20 1.04 16 3 H 0.09 1.19 7.58 -51.93 -0.39 0.79 16 4 C 0.12 0.72 5.51 -4.04 -0.02 0.70 16 5 N -0.62 -4.20 2.75 -172.41 -0.47 -4.67 16 6 C 0.10 0.38 7.07 -3.12 -0.02 0.36 16 7 C -0.13 -0.52 7.18 -25.09 -0.18 -0.70 16 8 C -0.16 -0.95 6.86 -26.74 -0.18 -1.13 16 9 C 0.52 5.04 8.02 -10.86 -0.09 4.95 16 10 O -0.53 -7.54 17.59 5.56 0.10 -7.44 16 11 N -0.74 -6.22 4.51 -58.67 -0.26 -6.48 16 12 C 0.70 9.19 8.37 -86.92 -0.73 8.46 16 13 O -0.57 -10.17 13.46 5.29 0.07 -10.10 16 14 N -0.68 -8.27 5.34 -14.22 -0.08 -8.35 16 15 C 0.12 1.97 6.29 -83.69 -0.53 1.44 16 16 C -0.12 -2.19 8.69 -39.40 -0.34 -2.53 16 17 C -0.11 -2.28 9.69 -39.61 -0.38 -2.66 16 18 C -0.04 -0.95 5.07 -104.59 -0.53 -1.48 16 19 C 0.05 1.24 5.10 -29.03 -0.15 1.09 16 20 C -0.51 -14.36 9.09 -34.44 -0.31 -14.68 16 21 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 22 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 23 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 24 Si 0.90 21.62 29.54 -169.99 -5.02 16.59 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 28 C -0.11 -2.11 9.69 -39.61 -0.38 -2.50 16 29 C -0.14 -2.34 9.97 -39.39 -0.39 -2.73 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.10 0.67 7.92 -51.93 -0.41 0.26 16 35 H 0.07 0.19 5.95 -51.93 -0.31 -0.12 16 36 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.39 1.98 6.52 -40.82 -0.27 1.72 16 42 H 0.40 3.23 8.84 -40.82 -0.36 2.87 16 43 H 0.13 2.49 6.25 -52.48 -0.33 2.16 16 44 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 45 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 46 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 47 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 48 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 49 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 404.94 15.07 6.10 6.10 Total: -1.00 -36.85 404.94 -10.53 -47.39 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -7.52 Total: 2.61 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -4.18 Total: -9.75 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: -0.08 Total: -45.40 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: 0.17 Total: -17.54 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.85 -10.53 -47.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932581784.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.639 kcal (2) G-P(sol) polarization free energy of solvation -36.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds