Wall clock time and date at job start Wed Apr 1 2020 03:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47205 * 2 1 4 4 C 1.53002 * 109.47217 * 240.00199 * 2 1 3 5 5 N 1.46504 * 109.46794 * 184.99706 * 4 2 1 6 6 C 1.46767 * 124.34486 * 89.99882 * 5 4 2 7 7 C 1.54487 * 105.47169 * 197.01393 * 6 5 4 8 8 C 1.54631 * 101.76291 * 334.58762 * 7 6 5 9 9 C 1.34413 * 124.34993 * 269.69966 * 5 4 2 10 10 O 1.21278 * 124.94496 * 359.57206 * 9 5 4 11 11 N 1.46499 * 109.47113 * 119.99558 * 2 1 3 12 12 C 1.34773 * 120.00232 * 275.00294 * 11 2 1 13 13 O 1.21587 * 119.99800 * 359.97438 * 12 11 2 14 14 N 1.34775 * 119.99744 * 179.97438 * 12 11 2 15 15 C 1.39949 * 119.99646 * 184.35812 * 14 12 11 16 16 C 1.38861 * 120.07490 * 324.67600 * 15 14 12 17 17 C 1.38116 * 119.93460 * 179.76834 * 16 15 14 18 18 C 1.38282 * 120.06346 * 0.50137 * 17 16 15 19 19 C 1.50701 * 119.93010 * 179.72358 * 18 17 16 20 20 C 1.50702 * 109.47243 * 270.02845 * 19 18 17 21 21 H 1.07999 * 119.99773 * 359.97438 * 20 19 18 22 22 C 1.37877 * 119.99949 * 179.97438 * 20 19 18 23 23 N 1.31511 * 119.99752 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99926 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47220 * 89.99866 * 24 22 20 26 26 H 1.48500 * 109.47072 * 210.00258 * 24 22 20 27 27 H 1.48506 * 109.47367 * 329.99698 * 24 22 20 28 28 C 1.38281 * 120.14265 * 359.75111 * 18 17 16 29 29 C 1.38112 * 120.06908 * 359.97438 * 28 18 17 30 30 H 1.08996 * 109.47572 * 300.00109 * 1 2 3 31 31 H 1.08999 * 109.47017 * 60.00629 * 1 2 3 32 32 H 1.08997 * 109.46798 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.46786 * 304.99273 * 4 2 1 34 34 H 1.08990 * 109.47466 * 65.00117 * 4 2 1 35 35 H 1.08992 * 110.25186 * 316.01370 * 6 5 4 36 36 H 1.09000 * 110.24743 * 77.93292 * 6 5 4 37 37 H 1.09000 * 110.96638 * 92.70034 * 7 6 5 38 38 H 1.09002 * 110.96927 * 216.46922 * 7 6 5 39 39 H 1.09002 * 110.48743 * 143.47660 * 8 7 6 40 40 H 1.09006 * 110.48483 * 265.98765 * 8 7 6 41 41 H 0.96999 * 119.99536 * 95.00293 * 11 2 1 42 42 H 0.96997 * 120.00177 * 4.64635 * 14 12 11 43 43 H 1.08007 * 120.02952 * 359.97438 * 16 15 14 44 44 H 1.07995 * 119.96824 * 180.25006 * 17 16 15 45 45 H 1.09000 * 109.46809 * 30.02562 * 19 18 17 46 46 H 1.08993 * 109.47191 * 150.02155 * 19 18 17 47 47 H 0.97003 * 119.99873 * 179.97438 * 23 22 20 48 48 H 1.08001 * 119.96506 * 180.02562 * 28 18 17 49 49 H 1.08002 * 120.03355 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8262 -1.1905 6 6 4.2258 -1.9486 -0.5842 7 6 5.6666 -1.4367 -0.3633 8 6 5.7780 -0.3338 -1.4414 9 6 4.3471 0.0902 -1.6901 10 8 4.0130 1.1097 -2.2555 11 7 2.0183 -0.6905 1.1962 12 6 2.1470 -0.0181 2.3571 13 8 1.8582 1.1617 2.4116 14 7 2.5958 -0.6536 3.4577 15 6 2.6432 0.0194 4.6838 16 6 2.9554 1.3719 4.7237 17 6 2.9966 2.0343 5.9349 18 6 2.7376 1.3497 7.1081 19 6 2.7895 2.0741 8.4285 20 6 4.1868 1.9990 8.9881 21 1 4.9598 1.4785 8.4422 22 6 4.4783 2.5950 10.1967 23 7 3.5371 3.2293 10.8610 24 14 6.2101 2.5014 10.8906 25 1 6.9996 3.6635 10.4095 26 1 6.1507 2.5232 12.3742 27 1 6.8567 1.2428 10.4397 28 6 2.4315 0.0016 7.0723 29 6 2.3831 -0.6651 5.8637 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6055 -1.7197 -1.2951 34 1 1.7518 -0.1583 -2.1369 35 1 3.7720 -2.2207 0.3686 36 1 4.2278 -2.8049 -1.2587 37 1 5.7827 -1.0180 0.6364 38 1 6.3936 -2.2294 -0.5396 39 1 6.3681 0.5042 -1.0703 40 1 6.2190 -0.7353 -2.3538 41 1 2.2491 -1.6317 1.1526 42 1 2.8898 -1.5761 3.3991 43 1 3.1625 1.9060 3.8080 44 1 3.2354 3.0871 5.9661 45 1 2.5127 3.1180 8.2814 46 1 2.0933 1.6085 9.1260 47 1 3.7421 3.6482 11.7116 48 1 2.2292 -0.5302 7.9903 49 1 2.1444 -1.7181 5.8365 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932581784.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:10 Heat of formation + Delta-G solvation = -63.636511 kcal Electronic energy + Delta-G solvation = -29787.000262 eV Core-core repulsion = 25712.705475 eV Total energy + Delta-G solvation = -4074.294788 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.86563 -41.25116 -39.82179 -37.83625 -36.93403 -36.11850 -35.01233 -33.63391 -32.30912 -31.74594 -31.21538 -28.50640 -28.28673 -27.24903 -25.28314 -23.85635 -23.26775 -22.81852 -21.97872 -21.60063 -20.52972 -19.63597 -18.57603 -18.46732 -17.79136 -17.41067 -17.17182 -16.75300 -16.51222 -16.15260 -15.91740 -15.72153 -15.15174 -15.01168 -14.80657 -14.63885 -14.51436 -14.43296 -14.25268 -13.97934 -13.74469 -13.58858 -13.32761 -13.25944 -13.09976 -13.05157 -12.88784 -12.62301 -12.43945 -12.38423 -12.13598 -12.05816 -11.85542 -11.67385 -11.53524 -11.24154 -10.89532 -10.87178 -10.59718 -10.29554 -9.74315 -9.67671 -8.83095 -8.17214 -6.32219 0.50595 0.59569 1.40303 1.41984 1.49590 1.53104 1.53437 2.01406 2.10110 2.41109 3.02891 3.11821 3.15633 3.42559 3.62186 3.68834 4.00977 4.05345 4.07664 4.17250 4.18362 4.26299 4.40156 4.48400 4.57884 4.60801 4.63683 4.68494 4.70253 4.74531 4.76907 4.87996 4.95674 5.07907 5.14667 5.20490 5.23775 5.31793 5.34522 5.42528 5.44003 5.52032 5.57675 5.64676 5.76979 5.96655 6.08522 6.10631 6.14464 6.27971 6.80595 7.00733 7.12155 7.36182 7.50901 8.90736 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015562 B = 0.002164 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.802379 B =12937.320727 C =13794.094819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.146 3.854 3 H 0.045 0.955 4 C 0.122 3.878 5 N -0.615 5.615 6 C 0.098 3.902 7 C -0.126 4.126 8 C -0.155 4.155 9 C 0.499 3.501 10 O -0.590 6.590 11 N -0.712 5.712 12 C 0.698 3.302 13 O -0.620 6.620 14 N -0.664 5.664 15 C 0.139 3.861 16 C -0.124 4.124 17 C -0.123 4.123 18 C -0.075 4.075 19 C 0.057 3.943 20 C -0.526 4.526 21 H 0.056 0.944 22 C 0.001 3.999 23 N -0.932 5.932 24 Si 0.967 3.033 25 H -0.275 1.275 26 H -0.279 1.279 27 H -0.261 1.261 28 C -0.113 4.113 29 C -0.124 4.124 30 H 0.035 0.965 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.130 0.870 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.072 0.928 38 H 0.121 0.879 39 H 0.090 0.910 40 H 0.123 0.877 41 H 0.412 0.588 42 H 0.425 0.575 43 H 0.119 0.881 44 H 0.104 0.896 45 H -0.004 1.004 46 H 0.008 0.992 47 H 0.265 0.735 48 H 0.128 0.872 49 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.181 -21.865 -27.893 35.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.040 3.960 3 H 0.064 0.936 4 C 0.000 4.000 5 N -0.347 5.347 6 C -0.024 4.024 7 C -0.164 4.164 8 C -0.195 4.195 9 C 0.289 3.711 10 O -0.471 6.471 11 N -0.371 5.371 12 C 0.399 3.601 13 O -0.499 6.499 14 N -0.314 5.314 15 C 0.044 3.956 16 C -0.145 4.145 17 C -0.142 4.142 18 C -0.075 4.075 19 C 0.020 3.980 20 C -0.564 4.564 21 H 0.075 0.925 22 C -0.196 4.196 23 N -0.572 5.572 24 Si 0.791 3.209 25 H -0.201 1.201 26 H -0.204 1.204 27 H -0.186 1.186 28 C -0.131 4.131 29 C -0.144 4.144 30 H 0.054 0.946 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.148 0.852 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.122 0.878 37 H 0.091 0.909 38 H 0.139 0.861 39 H 0.109 0.891 40 H 0.141 0.859 41 H 0.251 0.749 42 H 0.264 0.736 43 H 0.137 0.863 44 H 0.122 0.878 45 H 0.014 0.986 46 H 0.026 0.974 47 H 0.074 0.926 48 H 0.146 0.854 49 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.391 -20.255 -28.075 34.621 hybrid contribution 0.776 0.438 0.818 1.210 sum 0.385 -19.816 -27.257 33.701 Atomic orbital electron populations 1.22084 0.93462 1.03754 1.02204 1.21238 0.94935 0.96184 0.83649 0.93648 1.21817 0.78397 1.03644 0.96166 1.48393 1.06051 1.22602 1.57654 1.22466 0.91692 0.88615 0.99597 1.22639 0.97021 0.98429 0.98263 1.22374 0.92697 1.01504 1.02908 1.21690 0.90662 0.82106 0.76668 1.90706 1.83309 1.27583 1.45453 1.44942 1.70859 1.13948 1.07302 1.16147 0.78059 0.84750 0.81173 1.90954 1.57896 1.16490 1.84584 1.42160 1.67317 1.16754 1.05123 1.17301 1.01575 0.91711 0.84980 1.21087 1.01301 0.94936 0.97162 1.20894 1.01511 0.99713 0.92079 1.20379 0.96536 0.95299 0.95333 1.18089 0.96469 0.93763 0.89686 1.21389 0.95577 1.34514 1.04911 0.92533 1.25971 1.01763 0.94675 0.97231 1.70093 1.34964 1.36484 1.15675 0.85412 0.79073 0.78975 0.77398 1.20074 1.20415 1.18550 1.20977 1.00500 0.93296 0.98368 1.21017 1.02248 1.01341 0.89817 0.94560 0.90396 0.89374 0.85199 0.89209 0.89102 0.87751 0.90924 0.86055 0.89103 0.85933 0.74895 0.73643 0.86287 0.87815 0.98613 0.97409 0.92610 0.85407 0.81945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 9.48 71.98 0.68 -1.52 16 2 C 0.15 2.35 2.88 44.99 0.13 2.48 16 3 H 0.05 1.21 7.58 -2.39 -0.02 1.19 16 4 C 0.12 1.18 5.51 86.38 0.48 1.66 16 5 N -0.61 -6.90 2.75 -817.98 -2.25 -9.15 16 6 C 0.10 0.27 7.07 86.83 0.61 0.89 16 7 C -0.13 -0.57 7.18 31.66 0.23 -0.34 16 8 C -0.15 -1.69 6.86 30.59 0.21 -1.48 16 9 C 0.50 9.60 8.02 87.90 0.71 10.31 16 10 O -0.59 -17.88 17.59 -3.02 -0.05 -17.93 16 11 N -0.71 -10.02 4.51 -457.81 -2.06 -12.08 16 12 C 0.70 17.09 8.37 179.06 1.50 18.59 16 13 O -0.62 -22.61 13.46 -3.99 -0.05 -22.66 16 14 N -0.66 -13.88 5.34 -317.18 -1.69 -15.57 16 15 C 0.14 4.26 6.29 38.14 0.24 4.50 16 16 C -0.12 -4.80 8.69 22.39 0.19 -4.61 16 17 C -0.12 -5.43 9.69 22.25 0.22 -5.21 16 18 C -0.07 -3.44 5.07 -19.84 -0.10 -3.54 16 19 C 0.06 3.15 5.10 29.10 0.15 3.30 16 20 C -0.53 -30.62 9.09 25.60 0.23 -30.38 16 21 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 22 C 0.00 0.08 5.46 84.66 0.46 0.55 16 23 N -0.93 -57.28 13.29 21.45 0.28 -57.00 16 24 Si 0.97 44.76 29.54 68.60 2.03 46.79 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 26 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 27 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 28 C -0.11 -4.26 9.69 22.25 0.22 -4.04 16 29 C -0.12 -3.60 9.97 22.39 0.22 -3.37 16 30 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.13 0.16 8.14 -2.39 -0.02 0.14 16 34 H 0.09 1.12 7.92 -2.39 -0.02 1.10 16 35 H 0.09 -0.05 5.95 -2.39 -0.01 -0.07 16 36 H 0.10 -0.22 8.14 -2.39 -0.02 -0.24 16 37 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.12 -0.10 8.14 -2.39 -0.02 -0.12 16 39 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.12 0.84 8.14 -2.38 -0.02 0.82 16 41 H 0.41 2.13 6.52 -92.71 -0.60 1.53 16 42 H 0.42 4.58 8.84 -92.71 -0.82 3.76 16 43 H 0.12 4.82 6.25 -2.91 -0.02 4.80 16 44 H 0.10 4.72 8.06 -2.91 -0.02 4.70 16 45 H 0.00 -0.27 8.08 -2.39 -0.02 -0.29 16 46 H 0.01 0.44 8.08 -2.39 -0.02 0.42 16 47 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 48 H 0.13 4.60 8.06 -2.91 -0.02 4.57 16 49 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -89.07 404.94 2.12 -86.95 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -0.45 Total: 12.89 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: 6.37 Total: -12.23 kcal Atomic # 7 Polarization: -88.08 SS G_CDS: -5.72 Total: -93.80 kcal Atomic # 8 Polarization: -40.48 SS G_CDS: -0.11 Total: -40.59 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -89.07 2.12 -86.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932581784.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.309 kcal (2) G-P(sol) polarization free energy of solvation -89.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds