Wall clock time and date at job start Wed Apr 1 2020 03:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47328 * 2 1 4 4 O 1.42903 * 109.47038 * 240.00265 * 2 1 3 5 5 C 1.35908 * 117.00444 * 84.88894 * 4 2 1 6 6 C 1.39136 * 120.46849 * 354.49975 * 5 4 2 7 7 C 1.38542 * 118.37430 * 180.02562 * 6 5 4 8 8 C 1.38259 * 119.21807 * 0.02562 * 7 6 5 9 9 N 1.31852 * 120.88736 * 359.97438 * 8 7 6 10 10 C 1.31841 * 121.77932 * 359.70543 * 9 8 7 11 11 C 1.50694 * 109.46925 * 120.00128 * 2 1 3 12 12 O 1.21282 * 119.99970 * 115.00208 * 11 2 1 13 13 N 1.34777 * 120.00114 * 294.99873 * 11 2 1 14 14 C 1.47215 * 126.70177 * 359.97438 * 13 11 2 15 15 C 1.53773 * 106.37788 * 211.27398 * 14 13 11 16 16 H 1.09003 * 111.86157 * 104.04621 * 15 14 13 17 17 C 1.53785 * 109.34686 * 228.51882 * 15 14 13 18 18 N 1.47209 * 106.37973 * 93.95499 * 17 15 14 19 19 C 1.36932 * 126.70247 * 211.28015 * 18 17 15 20 20 H 1.08008 * 120.00099 * 179.97438 * 19 18 17 21 21 C 1.38815 * 120.00401 * 359.96909 * 19 18 17 22 22 N 1.31623 * 119.99711 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00354 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46913 * 60.00258 * 23 21 19 25 25 H 1.48501 * 109.47025 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46785 * 300.00169 * 23 21 19 27 27 C 1.47218 * 106.59324 * 31.27526 * 18 17 15 28 28 C 1.53751 * 106.43292 * 328.72530 * 27 18 17 29 29 C 1.52996 * 112.66866 * 141.05929 * 28 27 18 30 30 C 1.47213 * 126.70346 * 180.02562 * 13 11 2 31 31 H 1.08996 * 109.47006 * 300.00005 * 1 2 3 32 32 H 1.09006 * 109.46835 * 60.00134 * 1 2 3 33 33 H 1.08994 * 109.47119 * 179.97438 * 1 2 3 34 34 H 1.07997 * 120.81896 * 0.02645 * 6 5 4 35 35 H 1.07998 * 120.39538 * 180.02562 * 7 6 5 36 36 H 1.07997 * 119.55477 * 179.97438 * 8 7 6 37 37 H 1.08001 * 119.66052 * 180.28593 * 10 9 8 38 38 H 1.09006 * 110.07249 * 330.50541 * 14 13 11 39 39 H 1.09001 * 110.06975 * 92.04191 * 14 13 11 40 40 H 1.09002 * 110.07289 * 213.18943 * 17 15 14 41 41 H 1.09009 * 110.06897 * 334.66981 * 17 15 14 42 42 H 0.96991 * 120.00022 * 179.97438 * 22 21 19 43 43 H 1.08999 * 110.07486 * 87.95719 * 27 18 17 44 44 H 1.08999 * 110.07094 * 209.43729 * 27 18 17 45 45 H 1.08999 * 109.47160 * 182.67396 * 29 28 27 46 46 H 1.09006 * 109.47199 * 302.67138 * 29 28 27 47 47 H 1.09002 * 109.47338 * 62.67024 * 29 28 27 48 48 H 1.09001 * 110.07863 * 267.95660 * 30 13 11 49 49 H 1.09005 * 110.07305 * 29.44507 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1103 0.0621 -2.3048 6 6 1.6563 1.3768 -2.3390 7 6 1.7832 2.0867 -3.5219 8 6 2.3517 1.4703 -4.6212 9 7 2.7720 0.2223 -4.5554 10 6 2.6752 -0.4854 -3.4473 11 6 2.0323 -0.7104 1.2304 12 8 2.6529 -1.7467 1.1214 13 7 1.7918 -0.1942 2.4520 14 6 1.0595 1.0466 2.7542 15 6 1.6854 1.6179 4.0374 16 1 2.3353 2.4677 3.8284 17 6 0.5691 1.9815 5.0306 18 7 0.3983 0.8128 5.9093 19 6 -0.7631 0.4004 6.5060 20 1 -0.7652 -0.4787 7.1335 21 6 -1.9378 1.1122 6.3047 22 7 -1.9353 2.1832 5.5397 23 14 -3.5219 0.5499 7.1194 24 1 -3.3485 0.5539 8.5942 25 1 -4.6243 1.4729 6.7476 26 1 -3.8524 -0.8242 6.6634 27 6 1.7199 0.1741 6.0209 28 6 2.4414 0.4314 4.6878 29 6 3.9302 0.7322 4.8716 30 6 2.2111 -0.7604 3.7445 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 1.2158 1.8329 -1.4647 35 1 1.4421 3.1095 -3.5847 36 1 2.4529 2.0185 -5.5462 37 1 3.0348 -1.5037 -3.4303 38 1 1.1721 1.7565 1.9348 39 1 0.0043 0.8277 2.9180 40 1 0.8602 2.8522 5.6183 41 1 -0.3574 2.1857 4.4937 42 1 -2.7561 2.6804 5.3986 43 1 2.2822 0.6187 6.8420 44 1 1.6049 -0.8975 6.1838 45 1 4.3787 0.9523 3.9028 46 1 4.0485 1.5924 5.5305 47 1 4.4242 -0.1338 5.3123 48 1 1.4278 -1.4058 4.1421 49 1 3.1354 -1.3255 3.6233 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091999640.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:39 Heat of formation + Delta-G solvation = 4.676654 kcal Electronic energy + Delta-G solvation = -31163.949073 eV Core-core repulsion = 27092.616566 eV Total energy + Delta-G solvation = -4071.332507 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.11746 -40.29378 -38.96565 -37.73103 -35.07544 -33.30631 -32.49992 -32.06912 -30.91631 -30.26158 -30.03568 -26.74430 -25.99024 -25.26717 -24.80048 -23.88878 -23.09841 -22.22191 -20.25737 -19.47304 -18.80771 -18.71611 -17.12979 -17.00450 -16.84890 -16.33940 -15.98002 -15.44479 -15.35739 -14.77751 -14.65338 -14.44926 -14.14062 -13.88456 -13.75213 -13.58226 -13.32817 -13.15774 -12.84659 -12.59130 -12.49410 -12.35596 -12.19017 -11.91688 -11.82792 -11.67172 -11.41533 -11.39580 -10.99940 -10.91042 -10.82361 -10.26755 -10.22155 -10.09217 -10.04254 -9.88073 -9.85723 -9.70720 -9.63342 -8.82144 -8.67524 -8.48484 -7.00614 -5.77454 -3.21697 0.86386 0.96675 2.36898 2.59119 3.32691 3.37823 3.38136 3.40119 3.53535 4.20814 4.29621 4.37991 4.38331 4.49810 4.58108 4.67668 4.80559 4.83252 4.91762 4.97964 5.10352 5.33873 5.36480 5.37652 5.46027 5.47953 5.50682 5.60362 5.68270 5.74837 5.78337 5.85258 5.88274 5.95855 6.05609 6.09696 6.16451 6.23336 6.25697 6.31214 6.38130 6.62705 6.67263 6.78574 6.94862 7.25767 7.48891 7.64313 7.67754 7.69715 8.17374 8.24581 9.08448 9.68821 10.35539 11.24171 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014366 B = 0.002817 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.596954 B = 9938.498695 C =10844.273578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.072 3.928 3 H 0.096 0.904 4 O -0.278 6.278 5 C 0.086 3.914 6 C -0.170 4.170 7 C -0.129 4.129 8 C 0.052 3.948 9 N -0.448 5.448 10 C 0.075 3.925 11 C 0.535 3.465 12 O -0.528 6.528 13 N -0.606 5.606 14 C 0.107 3.893 15 C -0.116 4.116 16 H 0.079 0.921 17 C 0.140 3.860 18 N -0.594 5.594 19 C -0.218 4.218 20 H 0.078 0.922 21 C -0.010 4.010 22 N -0.923 5.923 23 Si 0.915 3.085 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.144 3.856 28 C -0.087 4.087 29 C -0.124 4.124 30 C 0.126 3.874 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.157 0.843 37 H 0.165 0.835 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.010 0.990 41 H 0.128 0.872 42 H 0.254 0.746 43 H 0.023 0.977 44 H 0.045 0.955 45 H 0.050 0.950 46 H 0.059 0.941 47 H 0.054 0.946 48 H 0.075 0.925 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.619 2.085 -13.554 15.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.012 3.988 3 H 0.114 0.886 4 O -0.189 6.189 5 C 0.038 3.962 6 C -0.196 4.196 7 C -0.149 4.149 8 C -0.104 4.104 9 N -0.157 5.157 10 C -0.084 4.084 11 C 0.321 3.679 12 O -0.405 6.405 13 N -0.340 5.340 14 C -0.015 4.015 15 C -0.137 4.137 16 H 0.098 0.902 17 C 0.014 3.986 18 N -0.318 5.318 19 C -0.346 4.346 20 H 0.096 0.904 21 C -0.205 4.205 22 N -0.572 5.572 23 Si 0.746 3.254 24 H -0.212 1.212 25 H -0.215 1.215 26 H -0.212 1.212 27 C 0.017 3.983 28 C -0.089 4.089 29 C -0.182 4.182 30 C 0.004 3.996 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.160 0.840 35 H 0.156 0.844 36 H 0.175 0.825 37 H 0.182 0.818 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.028 0.972 41 H 0.145 0.855 42 H 0.065 0.935 43 H 0.041 0.959 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.078 0.922 47 H 0.074 0.926 48 H 0.093 0.907 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.101 0.940 -14.362 16.515 hybrid contribution -1.312 0.550 1.323 1.943 sum 6.789 1.490 -13.038 14.775 Atomic orbital electron populations 1.22413 0.92071 1.04878 1.04432 1.22190 0.96172 0.96722 0.83742 0.88614 1.86231 1.80622 1.36606 1.15415 1.20280 0.96336 0.91241 0.88373 1.21842 1.03392 0.94102 1.00299 1.22020 0.98730 1.01169 0.92953 1.22675 0.97581 0.91327 0.98853 1.67745 1.15005 1.07488 1.25433 1.22254 0.98940 1.01027 0.86166 1.19466 0.80299 0.85310 0.82804 1.90723 1.40665 1.23280 1.85795 1.48470 1.54894 1.25744 1.04878 1.22477 0.97410 0.84375 0.97241 1.23085 0.98706 0.96464 0.95416 0.90246 1.21997 0.97374 0.88479 0.90703 1.44482 1.03249 1.28695 1.55373 1.19047 0.84698 1.08379 1.22447 0.90368 1.24741 0.97928 0.97440 1.00437 1.69547 1.26423 1.19193 1.42048 0.86132 0.82674 0.77666 0.78936 1.21182 1.21529 1.21157 1.21367 0.87504 0.96810 0.92582 1.22178 0.95292 0.94538 0.96941 1.21653 0.93923 1.01478 1.01155 1.22142 1.00307 0.95803 0.81309 0.89089 0.90843 0.90471 0.83986 0.84360 0.82525 0.81806 0.91824 0.89364 0.97157 0.85474 0.93542 0.95933 0.93661 0.93074 0.92215 0.92645 0.90727 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 9.04 37.16 0.34 -1.69 16 2 C 0.07 0.91 1.95 -27.89 -0.05 0.85 16 3 H 0.10 1.01 5.84 -51.93 -0.30 0.71 16 4 O -0.28 -3.85 9.35 -39.31 -0.37 -4.22 16 5 C 0.09 1.02 6.62 -39.07 -0.26 0.76 16 6 C -0.17 -1.64 8.34 -39.14 -0.33 -1.97 16 7 C -0.13 -1.06 10.11 -39.46 -0.40 -1.46 16 8 C 0.05 0.48 11.18 -17.54 -0.20 0.28 16 9 N -0.45 -5.14 10.36 -13.12 -0.14 -5.28 16 10 C 0.07 0.88 11.14 -17.37 -0.19 0.68 16 11 C 0.53 8.63 7.26 -10.99 -0.08 8.55 16 12 O -0.53 -10.42 16.74 -14.30 -0.24 -10.66 16 13 N -0.61 -9.49 3.32 -171.61 -0.57 -10.06 16 14 C 0.11 1.61 4.80 -3.25 -0.02 1.59 16 15 C -0.12 -1.90 3.66 -88.76 -0.33 -2.22 16 16 H 0.08 1.16 7.92 -51.93 -0.41 0.75 16 17 C 0.14 2.98 5.56 -3.25 -0.02 2.96 16 18 N -0.59 -13.71 3.39 -171.14 -0.58 -14.29 16 19 C -0.22 -5.59 10.34 -15.06 -0.16 -5.74 16 20 H 0.08 1.96 7.83 -52.48 -0.41 1.55 16 21 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 22 N -0.92 -24.49 10.08 55.49 0.56 -23.93 16 23 Si 0.92 20.86 29.55 -169.99 -5.02 15.84 16 24 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 C 0.14 2.73 6.21 -3.26 -0.02 2.71 16 28 C -0.09 -1.39 1.10 -152.69 -0.17 -1.55 16 29 C -0.12 -1.65 8.52 37.16 0.32 -1.33 16 30 C 0.13 2.06 6.12 -3.27 -0.02 2.04 16 31 H 0.09 1.03 5.79 -51.93 -0.30 0.73 16 32 H 0.07 0.69 6.92 -51.93 -0.36 0.33 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.14 1.15 5.59 -52.49 -0.29 0.85 16 35 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 36 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.16 1.72 8.06 -52.49 -0.42 1.29 16 38 H 0.06 0.76 7.02 -51.93 -0.36 0.40 16 39 H 0.09 1.53 6.87 -51.93 -0.36 1.18 16 40 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.13 3.01 4.82 -51.92 -0.25 2.76 16 42 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 43 H 0.02 0.43 7.91 -51.93 -0.41 0.02 16 44 H 0.05 0.84 7.51 -51.93 -0.39 0.45 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.07 1.34 7.39 -51.93 -0.38 0.95 16 49 H 0.07 1.16 7.60 -51.93 -0.39 0.77 16 LS Contribution 383.74 15.07 5.78 5.78 Total: -1.00 -30.71 383.74 -9.39 -40.11 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -7.15 Total: 2.61 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -1.67 Total: 4.10 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.73 Total: -53.55 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.61 Total: -14.88 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.71 -9.39 -40.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091999640.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.785 kcal (2) G-P(sol) polarization free energy of solvation -30.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds