Wall clock time and date at job start Wed Apr 1 2020 03:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47328 * 2 1 4 4 O 1.42903 * 109.47038 * 240.00265 * 2 1 3 5 5 C 1.35908 * 117.00444 * 84.88894 * 4 2 1 6 6 C 1.39136 * 120.46849 * 354.49975 * 5 4 2 7 7 C 1.38542 * 118.37430 * 180.02562 * 6 5 4 8 8 C 1.38259 * 119.21807 * 0.02562 * 7 6 5 9 9 N 1.31852 * 120.88736 * 359.97438 * 8 7 6 10 10 C 1.31841 * 121.77932 * 359.70543 * 9 8 7 11 11 C 1.50694 * 109.46925 * 120.00128 * 2 1 3 12 12 O 1.21282 * 119.99970 * 115.00208 * 11 2 1 13 13 N 1.34777 * 120.00114 * 294.99873 * 11 2 1 14 14 C 1.47215 * 126.70177 * 359.97438 * 13 11 2 15 15 C 1.53773 * 106.37788 * 211.27398 * 14 13 11 16 16 H 1.09003 * 111.86157 * 104.04621 * 15 14 13 17 17 C 1.53785 * 109.34686 * 228.51882 * 15 14 13 18 18 N 1.47209 * 106.37973 * 93.95499 * 17 15 14 19 19 C 1.36932 * 126.70247 * 211.28015 * 18 17 15 20 20 H 1.08008 * 120.00099 * 179.97438 * 19 18 17 21 21 C 1.38815 * 120.00401 * 359.96909 * 19 18 17 22 22 N 1.31623 * 119.99711 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00354 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46913 * 60.00258 * 23 21 19 25 25 H 1.48501 * 109.47025 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46785 * 300.00169 * 23 21 19 27 27 C 1.47218 * 106.59324 * 31.27526 * 18 17 15 28 28 C 1.53751 * 106.43292 * 328.72530 * 27 18 17 29 29 C 1.52996 * 112.66866 * 141.05929 * 28 27 18 30 30 C 1.47213 * 126.70346 * 180.02562 * 13 11 2 31 31 H 1.08996 * 109.47006 * 300.00005 * 1 2 3 32 32 H 1.09006 * 109.46835 * 60.00134 * 1 2 3 33 33 H 1.08994 * 109.47119 * 179.97438 * 1 2 3 34 34 H 1.07997 * 120.81896 * 0.02645 * 6 5 4 35 35 H 1.07998 * 120.39538 * 180.02562 * 7 6 5 36 36 H 1.07997 * 119.55477 * 179.97438 * 8 7 6 37 37 H 1.08001 * 119.66052 * 180.28593 * 10 9 8 38 38 H 1.09006 * 110.07249 * 330.50541 * 14 13 11 39 39 H 1.09001 * 110.06975 * 92.04191 * 14 13 11 40 40 H 1.09002 * 110.07289 * 213.18943 * 17 15 14 41 41 H 1.09009 * 110.06897 * 334.66981 * 17 15 14 42 42 H 0.96991 * 120.00022 * 179.97438 * 22 21 19 43 43 H 1.08999 * 110.07486 * 87.95719 * 27 18 17 44 44 H 1.08999 * 110.07094 * 209.43729 * 27 18 17 45 45 H 1.08999 * 109.47160 * 182.67396 * 29 28 27 46 46 H 1.09006 * 109.47199 * 302.67138 * 29 28 27 47 47 H 1.09002 * 109.47338 * 62.67024 * 29 28 27 48 48 H 1.09001 * 110.07863 * 267.95660 * 30 13 11 49 49 H 1.09005 * 110.07305 * 29.44507 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1103 0.0621 -2.3048 6 6 1.6563 1.3768 -2.3390 7 6 1.7832 2.0867 -3.5219 8 6 2.3517 1.4703 -4.6212 9 7 2.7720 0.2223 -4.5554 10 6 2.6752 -0.4854 -3.4473 11 6 2.0323 -0.7104 1.2304 12 8 2.6529 -1.7467 1.1214 13 7 1.7918 -0.1942 2.4520 14 6 1.0595 1.0466 2.7542 15 6 1.6854 1.6179 4.0374 16 1 2.3353 2.4677 3.8284 17 6 0.5691 1.9815 5.0306 18 7 0.3983 0.8128 5.9093 19 6 -0.7631 0.4004 6.5060 20 1 -0.7652 -0.4787 7.1335 21 6 -1.9378 1.1122 6.3047 22 7 -1.9353 2.1832 5.5397 23 14 -3.5219 0.5499 7.1194 24 1 -3.3485 0.5539 8.5942 25 1 -4.6243 1.4729 6.7476 26 1 -3.8524 -0.8242 6.6634 27 6 1.7199 0.1741 6.0209 28 6 2.4414 0.4314 4.6878 29 6 3.9302 0.7322 4.8716 30 6 2.2111 -0.7604 3.7445 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 1.2158 1.8329 -1.4647 35 1 1.4421 3.1095 -3.5847 36 1 2.4529 2.0185 -5.5462 37 1 3.0348 -1.5037 -3.4303 38 1 1.1721 1.7565 1.9348 39 1 0.0043 0.8277 2.9180 40 1 0.8602 2.8522 5.6183 41 1 -0.3574 2.1857 4.4937 42 1 -2.7561 2.6804 5.3986 43 1 2.2822 0.6187 6.8420 44 1 1.6049 -0.8975 6.1838 45 1 4.3787 0.9523 3.9028 46 1 4.0485 1.5924 5.5305 47 1 4.4242 -0.1338 5.3123 48 1 1.4278 -1.4058 4.1421 49 1 3.1354 -1.3255 3.6233 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091999640.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:38 Heat of formation + Delta-G solvation = -12.980006 kcal Electronic energy + Delta-G solvation = -31164.714723 eV Core-core repulsion = 27092.616566 eV Total energy + Delta-G solvation = -4072.098157 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.11058 -41.42986 -40.10373 -38.85997 -36.62924 -34.77305 -33.35619 -33.13017 -32.36441 -31.64078 -31.01431 -27.94200 -27.65188 -26.74486 -25.78759 -24.73928 -24.22757 -23.39254 -21.83791 -20.68445 -20.15324 -19.60341 -18.68782 -18.11164 -17.80299 -17.43140 -17.11751 -16.72544 -16.54466 -16.37795 -15.84491 -15.52075 -15.34091 -14.99692 -14.95768 -14.75581 -14.52440 -14.20596 -14.00550 -13.84882 -13.61785 -13.48248 -13.30801 -13.19168 -13.14839 -12.94561 -12.72703 -12.63386 -12.50781 -12.38143 -12.31988 -11.95144 -11.82784 -11.50298 -11.40720 -11.26070 -11.02913 -10.76019 -10.69067 -10.58857 -9.81463 -9.48624 -8.86664 -7.72460 -5.18034 0.14199 0.22329 1.30797 1.36155 1.50146 1.50378 1.56555 2.32509 2.51289 2.79596 3.13810 3.34011 3.48631 3.52459 3.57951 3.66418 3.70297 3.73973 3.76449 3.89256 3.97762 4.13678 4.22671 4.24582 4.31123 4.36136 4.50387 4.54536 4.56779 4.69765 4.76308 4.79246 4.83582 4.84590 4.97317 4.99815 5.01693 5.05875 5.10670 5.16179 5.23213 5.27768 5.42379 5.44728 5.53528 5.59764 5.87054 6.11364 6.39591 6.41777 6.91160 6.95905 7.15832 7.80777 8.47442 9.25969 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014366 B = 0.002817 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.596954 B = 9938.498695 C =10844.273578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.078 3.922 3 H 0.126 0.874 4 O -0.303 6.303 5 C 0.065 3.935 6 C -0.169 4.169 7 C -0.120 4.120 8 C 0.049 3.951 9 N -0.471 5.471 10 C 0.055 3.945 11 C 0.531 3.469 12 O -0.571 6.571 13 N -0.602 5.602 14 C 0.114 3.886 15 C -0.106 4.106 16 H 0.109 0.891 17 C 0.144 3.856 18 N -0.616 5.616 19 C -0.232 4.232 20 H 0.075 0.925 21 C -0.057 4.057 22 N -0.939 5.939 23 Si 0.971 3.029 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.283 1.283 27 C 0.140 3.860 28 C -0.076 4.076 29 C -0.118 4.118 30 C 0.127 3.873 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.162 0.838 35 H 0.175 0.825 36 H 0.186 0.814 37 H 0.160 0.840 38 H 0.105 0.895 39 H 0.062 0.938 40 H -0.012 1.012 41 H 0.104 0.896 42 H 0.249 0.751 43 H 0.027 0.973 44 H 0.041 0.959 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.050 0.950 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.203 3.981 -14.959 17.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.019 3.981 3 H 0.143 0.857 4 O -0.215 6.215 5 C 0.018 3.982 6 C -0.195 4.195 7 C -0.139 4.139 8 C -0.108 4.108 9 N -0.181 5.181 10 C -0.102 4.102 11 C 0.320 3.680 12 O -0.450 6.450 13 N -0.335 5.335 14 C -0.008 4.008 15 C -0.127 4.127 16 H 0.127 0.873 17 C 0.019 3.981 18 N -0.339 5.339 19 C -0.360 4.360 20 H 0.093 0.907 21 C -0.250 4.250 22 N -0.589 5.589 23 Si 0.800 3.200 24 H -0.210 1.210 25 H -0.218 1.218 26 H -0.210 1.210 27 C 0.014 3.986 28 C -0.078 4.078 29 C -0.175 4.175 30 C 0.005 3.995 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.078 0.922 34 H 0.179 0.821 35 H 0.193 0.807 36 H 0.203 0.797 37 H 0.177 0.823 38 H 0.123 0.877 39 H 0.080 0.920 40 H 0.006 0.994 41 H 0.122 0.878 42 H 0.059 0.941 43 H 0.045 0.955 44 H 0.060 0.940 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.069 0.931 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.705 2.832 -15.763 18.228 hybrid contribution -1.483 -0.031 1.741 2.287 sum 7.223 2.801 -14.021 16.019 Atomic orbital electron populations 1.22383 0.91053 1.04179 1.05554 1.22180 0.96662 0.97235 0.82027 0.85704 1.86193 1.81307 1.37805 1.16166 1.20386 0.97818 0.92351 0.87666 1.22127 1.02651 0.93089 1.01628 1.22422 0.97200 1.02508 0.91769 1.23284 0.96398 0.90637 1.00442 1.67760 1.16055 1.08846 1.25430 1.22279 0.99878 1.01345 0.86723 1.20152 0.79363 0.84855 0.83674 1.90699 1.42635 1.25216 1.86429 1.48470 1.54554 1.25805 1.04684 1.22384 0.95637 0.84712 0.98090 1.22991 0.97452 0.97581 0.94635 0.87323 1.21815 0.98067 0.87387 0.90873 1.44711 1.03980 1.29550 1.55703 1.19306 0.86039 1.08263 1.22434 0.90704 1.25392 1.00275 0.97904 1.01419 1.69766 1.26479 1.19803 1.42871 0.85270 0.79607 0.77088 0.78043 1.21020 1.21772 1.20957 1.21512 0.86204 0.96316 0.94534 1.22082 0.96896 0.94017 0.94778 1.21616 0.91449 1.02291 1.02166 1.22041 0.99669 0.95867 0.81967 0.89079 0.88436 0.92194 0.82060 0.80744 0.79697 0.82277 0.87723 0.91972 0.99394 0.87818 0.94125 0.95547 0.94044 0.91802 0.91522 0.91560 0.93144 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.62 9.04 71.98 0.65 -2.97 16 2 C 0.08 1.85 1.95 29.85 0.06 1.91 16 3 H 0.13 2.17 5.84 -2.39 -0.01 2.16 16 4 O -0.30 -8.20 9.35 -73.52 -0.69 -8.88 16 5 C 0.07 1.46 6.62 22.60 0.15 1.61 16 6 C -0.17 -2.71 8.34 22.56 0.19 -2.52 16 7 C -0.12 -1.49 10.11 22.35 0.23 -1.27 16 8 C 0.05 0.76 11.18 84.69 0.95 1.70 16 9 N -0.47 -10.27 10.36 -195.43 -2.02 -12.30 16 10 C 0.06 1.28 11.14 84.80 0.94 2.22 16 11 C 0.53 16.71 7.26 87.66 0.64 17.34 16 12 O -0.57 -22.67 16.74 15.95 0.27 -22.41 16 13 N -0.60 -18.19 3.32 -815.25 -2.71 -20.89 16 14 C 0.11 3.21 4.80 86.50 0.42 3.62 16 15 C -0.11 -3.29 3.66 -9.59 -0.04 -3.32 16 16 H 0.11 2.79 7.92 -2.39 -0.02 2.77 16 17 C 0.14 6.14 5.56 86.51 0.48 6.62 16 18 N -0.62 -28.80 3.39 -695.37 -2.36 -31.16 16 19 C -0.23 -12.12 10.34 84.03 0.87 -11.25 16 20 H 0.08 3.84 7.83 -2.91 -0.02 3.82 16 21 C -0.06 -2.99 5.49 84.86 0.47 -2.53 16 22 N -0.94 -50.63 10.08 21.65 0.22 -50.41 16 23 Si 0.97 43.36 29.55 68.60 2.03 45.39 16 24 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 25 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 26 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 27 C 0.14 5.30 6.21 86.50 0.54 5.84 16 28 C -0.08 -2.30 1.10 -51.00 -0.06 -2.36 16 29 C -0.12 -2.79 8.52 71.98 0.61 -2.18 16 30 C 0.13 4.09 6.12 86.49 0.53 4.62 16 31 H 0.09 1.90 5.79 -2.39 -0.01 1.88 16 32 H 0.10 1.55 6.92 -2.38 -0.02 1.53 16 33 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.16 1.87 5.59 -2.91 -0.02 1.86 16 35 H 0.18 0.90 8.06 -2.91 -0.02 0.88 16 36 H 0.19 1.61 8.06 -2.91 -0.02 1.59 16 37 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 38 H 0.10 2.11 7.02 -2.38 -0.02 2.09 16 39 H 0.06 2.14 6.87 -2.39 -0.02 2.12 16 40 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 41 H 0.10 4.98 4.82 -2.38 -0.01 4.96 16 42 H 0.25 13.13 8.31 -92.71 -0.77 12.36 16 43 H 0.03 0.99 7.91 -2.39 -0.02 0.97 16 44 H 0.04 1.57 7.51 -2.39 -0.02 1.55 16 45 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 47 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.05 1.86 7.39 -2.39 -0.02 1.84 16 49 H 0.08 2.42 7.60 -2.38 -0.02 2.40 16 Total: -1.00 -69.31 383.74 3.32 -65.99 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.96 Total: 17.58 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: 7.62 Total: 17.10 kcal Atomic # 7 Polarization: -107.90 SS G_CDS: -6.87 Total: -114.77 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -0.42 Total: -31.29 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -69.31 3.32 -65.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091999640.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.006 kcal (2) G-P(sol) polarization free energy of solvation -69.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds