Wall clock time and date at job start Wed Apr 1 2020 03:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47079 * 2 1 4 4 N 1.46502 * 109.47080 * 240.00176 * 2 1 3 5 5 C 1.34772 * 120.00081 * 84.99763 * 4 2 1 6 6 O 1.21545 * 119.99958 * 0.02562 * 5 4 2 7 7 C 1.47849 * 119.99639 * 179.72574 * 5 4 2 8 8 C 1.39570 * 120.14789 * 359.97438 * 7 5 4 9 9 C 1.37963 * 119.85224 * 179.76950 * 8 7 5 10 10 C 1.38360 * 120.14486 * 0.51108 * 9 8 7 11 11 C 1.38357 * 120.29122 * 359.74266 * 10 9 8 12 12 C 1.37963 * 120.14658 * 0.02562 * 11 10 9 13 13 C 1.50699 * 109.47506 * 120.00255 * 2 1 3 14 14 O 1.21278 * 120.00778 * 119.99971 * 13 2 1 15 15 N 1.34778 * 119.99642 * 300.00165 * 13 2 1 16 16 C 1.47425 * 125.64837 * 0.02562 * 15 13 2 17 17 C 1.54919 * 104.83019 * 204.09388 * 16 15 13 18 18 C 1.55148 * 101.58072 * 322.98944 * 17 16 15 19 19 H 1.09002 * 110.72415 * 276.96065 * 18 17 16 20 20 N 1.46504 * 110.72030 * 153.86881 * 18 17 16 21 21 C 1.46503 * 119.99539 * 301.45305 * 20 18 17 22 22 C 1.36926 * 120.00552 * 121.45208 * 20 18 17 23 23 H 1.08003 * 120.00088 * 23.50767 * 22 20 18 24 24 C 1.38812 * 120.00643 * 203.50595 * 22 20 18 25 25 N 1.31624 * 119.99576 * 15.22513 * 24 22 20 26 26 Si 1.86794 * 120.00556 * 195.21941 * 24 22 20 27 27 H 1.48501 * 109.46886 * 60.00189 * 26 24 22 28 28 H 1.48500 * 109.47239 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47064 * 300.00216 * 26 24 22 30 30 C 1.47029 * 125.64989 * 179.71610 * 15 13 2 31 31 H 1.09000 * 109.47079 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47140 * 299.99636 * 1 2 3 33 33 H 1.08991 * 109.47257 * 60.00287 * 1 2 3 34 34 H 0.97004 * 119.99543 * 264.99860 * 4 2 1 35 35 H 1.07997 * 120.07197 * 359.97438 * 8 7 5 36 36 H 1.08001 * 119.92567 * 180.27734 * 9 8 7 37 37 H 1.07998 * 119.85157 * 179.76353 * 10 9 8 38 38 H 1.07999 * 119.92537 * 180.02562 * 11 10 9 39 39 H 1.08000 * 120.07002 * 180.02562 * 12 11 10 40 40 H 1.09003 * 110.36785 * 322.92977 * 16 15 13 41 41 H 1.08993 * 110.36522 * 85.14693 * 16 15 13 42 42 H 1.09000 * 111.00149 * 81.06946 * 17 16 15 43 43 H 1.09001 * 110.99904 * 204.91600 * 17 16 15 44 44 H 1.08998 * 109.47245 * 95.21907 * 21 20 18 45 45 H 1.08999 * 109.47031 * 215.21789 * 21 20 18 46 46 H 1.08999 * 109.47301 * 335.21354 * 21 20 18 47 47 H 0.96998 * 120.00098 * 179.97438 * 25 24 22 48 48 H 1.09003 * 109.87877 * 298.39760 * 30 15 13 49 49 H 1.08997 * 109.88178 * 59.55486 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8583 1.1612 -2.4116 7 6 2.6455 -0.7138 -3.5628 8 6 2.9843 -2.0664 -3.5020 9 6 3.4445 -2.7105 -4.6319 10 6 3.5804 -2.0161 -5.8209 11 6 3.2513 -0.6738 -5.8866 12 6 2.7855 -0.0189 -4.7652 13 6 2.0324 -0.7104 1.2304 14 8 2.7297 -1.6965 1.1192 15 7 1.7068 -0.2500 2.4545 16 6 0.8705 0.9316 2.7336 17 6 1.2943 1.3915 4.1510 18 6 1.5388 0.0329 4.8591 19 1 0.6015 -0.3844 5.2272 20 7 2.5014 0.1844 5.9532 21 6 3.8469 0.6951 5.6794 22 6 2.1435 -0.1512 7.2315 23 1 1.3426 -0.8557 7.4008 24 6 2.8099 0.4140 8.3100 25 7 3.5656 1.4771 8.1329 26 14 2.6343 -0.3338 10.0127 27 1 3.1169 -1.7380 9.9888 28 1 3.4395 0.4504 10.9833 29 1 1.2064 -0.3079 10.4198 30 6 2.1215 -0.8466 3.7327 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5137 -0.8899 34 1 2.2490 -1.6318 -1.1526 35 1 2.8834 -2.6083 -2.5733 36 1 3.7027 -3.7583 -4.5873 37 1 3.9446 -2.5241 -6.7015 38 1 3.3592 -0.1376 -6.8178 39 1 2.5286 1.0288 -4.8180 40 1 1.0688 1.7174 2.0047 41 1 -0.1851 0.6607 2.7207 42 1 2.2094 1.9824 4.1126 43 1 0.4925 1.9470 4.6374 44 1 3.8716 1.7696 5.8605 45 1 4.5638 0.1997 6.3342 46 1 4.1067 0.4958 4.6397 47 1 4.0310 1.8723 8.8866 48 1 1.7310 -1.8612 3.8122 49 1 3.2093 -0.8596 3.8001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193878553.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:26 Heat of formation + Delta-G solvation = -7.811124 kcal Electronic energy + Delta-G solvation = -29874.600421 eV Core-core repulsion = 25802.726403 eV Total energy + Delta-G solvation = -4071.874017 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.79033 -39.87736 -38.54023 -37.55205 -35.19662 -34.89736 -32.46369 -31.60044 -31.30524 -30.28752 -29.78313 -27.80105 -26.09050 -25.37733 -24.18798 -23.05573 -22.63985 -22.18276 -20.63596 -19.78994 -19.23503 -18.43444 -17.17166 -16.91101 -16.48814 -16.22638 -15.85092 -15.55443 -15.36506 -14.89778 -14.77037 -14.59858 -14.10825 -13.93998 -13.76515 -13.54411 -13.39929 -13.26283 -12.95569 -12.69020 -12.50349 -12.37582 -12.28331 -12.04947 -11.94522 -11.67013 -11.47170 -11.30413 -11.02218 -10.79268 -10.63794 -10.52394 -10.30993 -10.22824 -9.95346 -9.91441 -9.83276 -9.47116 -9.38098 -9.25234 -8.61871 -8.46367 -6.85301 -5.80412 -3.27946 0.49354 0.98074 2.52876 2.57509 2.67089 3.23610 3.35257 3.41438 3.42486 3.53973 4.27933 4.38666 4.43254 4.46265 4.55247 4.74428 4.86190 4.92661 4.95191 4.99016 5.09386 5.19928 5.24564 5.39185 5.40255 5.46319 5.52519 5.57172 5.59700 5.68162 5.81364 5.92558 5.93689 5.95706 6.00557 6.04963 6.09667 6.21836 6.32592 6.46421 6.48783 6.57350 6.74723 6.82160 7.23851 7.27758 7.58804 7.66223 7.73794 7.92655 8.12316 8.31398 9.13983 9.76825 10.25829 11.24240 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.027115 B = 0.001929 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.374307 B =14513.667851 C =14849.053541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.129 3.871 3 H 0.115 0.885 4 N -0.707 5.707 5 C 0.562 3.438 6 O -0.537 6.537 7 C -0.133 4.133 8 C -0.084 4.084 9 C -0.128 4.128 10 C -0.095 4.095 11 C -0.130 4.130 12 C -0.060 4.060 13 C 0.522 3.478 14 O -0.546 6.546 15 N -0.603 5.603 16 C 0.093 3.907 17 C -0.151 4.151 18 C 0.173 3.827 19 H 0.080 0.920 20 N -0.585 5.585 21 C 0.157 3.843 22 C -0.264 4.264 23 H 0.069 0.931 24 C 0.006 3.994 25 N -0.902 5.902 26 Si 0.906 3.094 27 H -0.284 1.284 28 H -0.290 1.290 29 H -0.282 1.282 30 C 0.086 3.914 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.409 0.591 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.137 0.863 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.035 0.965 45 H 0.040 0.960 46 H 0.003 0.997 47 H 0.254 0.746 48 H 0.063 0.937 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.471 -4.506 -25.485 26.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.021 3.979 3 H 0.132 0.868 4 N -0.361 5.361 5 C 0.350 3.650 6 O -0.415 6.415 7 C -0.136 4.136 8 C -0.102 4.102 9 C -0.146 4.146 10 C -0.113 4.113 11 C -0.148 4.148 12 C -0.078 4.078 13 C 0.309 3.691 14 O -0.424 6.424 15 N -0.336 5.336 16 C -0.030 4.030 17 C -0.192 4.192 18 C 0.062 3.938 19 H 0.098 0.902 20 N -0.305 5.305 21 C 0.013 3.987 22 C -0.393 4.393 23 H 0.087 0.913 24 C -0.193 4.193 25 N -0.546 5.546 26 Si 0.736 3.264 27 H -0.210 1.210 28 H -0.216 1.216 29 H -0.208 1.208 30 C -0.038 4.038 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.247 0.753 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.154 0.846 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.053 0.947 45 H 0.059 0.941 46 H 0.022 0.978 47 H 0.064 0.936 48 H 0.081 0.919 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.148 -4.115 -25.434 26.097 hybrid contribution 0.146 -0.741 1.034 1.281 sum -4.003 -4.857 -24.400 25.199 Atomic orbital electron populations 1.22263 0.92692 1.03306 1.04130 1.20712 0.95849 0.98053 0.83267 0.86768 1.45671 1.67076 1.14914 1.08405 1.18260 0.77426 0.86394 0.82934 1.90771 1.50401 1.15357 1.85002 1.19910 1.04864 0.94555 0.94303 1.21415 0.96403 0.93418 0.99011 1.21147 1.00265 1.00449 0.92693 1.21407 0.97421 0.94527 0.97985 1.21180 1.00113 0.94909 0.98589 1.21308 0.95012 1.00487 0.91033 1.20099 0.80626 0.84690 0.83682 1.90679 1.38781 1.26876 1.86056 1.48401 1.50421 1.29418 1.05387 1.22579 0.94515 0.87068 0.98822 1.23415 1.02410 1.00600 0.92752 1.21304 0.93336 0.91778 0.87340 0.90218 1.43848 1.08479 1.75303 1.02862 1.20809 0.85318 0.98671 0.93939 1.19144 1.18565 1.19721 0.81859 0.91282 1.25026 1.00241 0.96018 0.98034 1.70063 1.33928 1.20169 1.30445 0.86319 0.77623 0.78661 0.83820 1.20996 1.21624 1.20847 1.22819 1.01361 0.97594 0.81989 0.91806 0.89984 0.90853 0.75276 0.85335 0.85255 0.85538 0.85258 0.84556 0.90977 0.91001 0.90498 0.90123 0.94708 0.94132 0.97837 0.93564 0.91891 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 9.29 37.16 0.35 -1.31 16 2 C 0.13 1.58 2.33 -69.08 -0.16 1.42 16 3 H 0.11 1.45 7.28 -51.93 -0.38 1.07 16 4 N -0.71 -8.29 4.90 -55.88 -0.27 -8.57 16 5 C 0.56 6.97 7.74 -12.33 -0.10 6.88 16 6 O -0.54 -8.07 16.01 5.33 0.09 -7.98 16 7 C -0.13 -1.38 5.87 -104.97 -0.62 -1.99 16 8 C -0.08 -0.71 9.54 -39.19 -0.37 -1.09 16 9 C -0.13 -0.89 10.03 -39.64 -0.40 -1.29 16 10 C -0.10 -0.61 10.04 -39.49 -0.40 -1.01 16 11 C -0.13 -0.92 10.03 -39.64 -0.40 -1.32 16 12 C -0.06 -0.55 9.60 -39.18 -0.38 -0.93 16 13 C 0.52 7.80 7.28 -10.99 -0.08 7.72 16 14 O -0.55 -9.69 16.16 5.56 0.09 -9.60 16 15 N -0.60 -9.01 3.32 -170.51 -0.57 -9.58 16 16 C 0.09 1.17 5.14 -2.52 -0.01 1.15 16 17 C -0.15 -2.41 6.65 -24.58 -0.16 -2.58 16 18 C 0.17 3.25 3.43 -66.09 -0.23 3.03 16 19 H 0.08 1.47 7.93 -51.93 -0.41 1.06 16 20 N -0.58 -13.87 2.93 -171.39 -0.50 -14.38 16 21 C 0.16 3.74 7.69 59.85 0.46 4.20 16 22 C -0.26 -6.93 9.59 -15.06 -0.14 -7.07 16 23 H 0.07 1.76 7.86 -52.48 -0.41 1.35 16 24 C 0.01 0.16 5.05 -17.43 -0.09 0.07 16 25 N -0.90 -25.57 10.87 55.49 0.60 -24.97 16 26 Si 0.91 21.29 29.58 -169.99 -5.03 16.26 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 29 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 30 C 0.09 1.52 6.40 -3.06 -0.02 1.50 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.73 4.99 -51.93 -0.26 0.47 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.41 4.46 5.83 -40.82 -0.24 4.22 16 35 H 0.13 0.95 6.41 -52.49 -0.34 0.61 16 36 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 37 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 38 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 39 H 0.14 1.26 7.65 -52.49 -0.40 0.85 16 40 H 0.07 0.78 7.36 -51.93 -0.38 0.40 16 41 H 0.07 0.75 7.07 -51.93 -0.37 0.39 16 42 H 0.08 1.36 7.28 -51.93 -0.38 0.99 16 43 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 44 H 0.03 0.89 7.32 -51.93 -0.38 0.51 16 45 H 0.04 1.05 7.44 -51.93 -0.39 0.66 16 46 H 0.00 0.07 6.29 -51.93 -0.33 -0.26 16 47 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 48 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.07 1.48 6.13 -51.93 -0.32 1.16 16 LS Contribution 392.69 15.07 5.92 5.92 Total: -1.00 -32.20 392.69 -9.49 -41.69 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -7.07 Total: 3.81 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: -2.74 Total: 7.39 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -0.74 Total: -57.49 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: 0.18 Total: -17.58 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.20 -9.49 -41.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193878553.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.882 kcal (2) G-P(sol) polarization free energy of solvation -32.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds