Wall clock time and date at job start Wed Apr 1 2020 03:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47066 * 2 1 4 4 C 1.53007 * 109.46880 * 119.99416 * 2 1 3 5 5 N 1.46501 * 109.46871 * 175.00045 * 4 2 1 6 6 C 1.34773 * 119.99625 * 180.02562 * 5 4 2 7 7 O 1.21549 * 120.00498 * 0.02562 * 6 5 4 8 8 C 1.47848 * 119.99842 * 180.02562 * 6 5 4 9 9 C 1.40090 * 120.20538 * 359.91192 * 8 6 5 10 10 C 1.37932 * 119.83609 * 180.02562 * 9 8 6 11 11 C 1.38258 * 120.09558 * 359.97438 * 10 9 8 12 12 C 1.38620 * 120.52621 * 0.02562 * 11 10 9 13 13 C 1.38213 * 120.06557 * 359.97438 * 12 11 10 14 14 C 1.51343 * 109.86280 * 179.97438 * 13 12 11 15 15 C 1.54350 * 105.15638 * 342.85502 * 14 13 12 16 16 C 1.51400 * 130.30254 * 179.97438 * 12 11 10 17 17 N 1.46905 * 109.47485 * 239.99593 * 2 1 3 18 18 C 1.46899 * 110.99902 * 85.00020 * 17 2 1 19 19 C 1.50694 * 109.46921 * 180.02562 * 18 17 2 20 20 O 1.21289 * 120.00320 * 359.97438 * 19 18 17 21 21 N 1.34774 * 119.99778 * 180.02562 * 19 18 17 22 22 C 1.37104 * 119.99912 * 179.97438 * 21 19 18 23 23 H 1.08002 * 119.99659 * 0.02562 * 22 21 19 24 24 C 1.38948 * 119.99847 * 179.97438 * 22 21 19 25 25 N 1.31411 * 120.00007 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99967 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46834 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47132 * 119.99643 * 26 24 22 29 29 H 1.48495 * 109.47194 * 240.00057 * 26 24 22 30 30 H 1.08998 * 109.47066 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47266 * 300.00393 * 1 2 3 32 32 H 1.09005 * 109.46850 * 60.00574 * 1 2 3 33 33 H 1.08999 * 109.46833 * 55.00177 * 4 2 1 34 34 H 1.08999 * 109.47259 * 295.00093 * 4 2 1 35 35 H 0.96998 * 120.00158 * 0.02562 * 5 4 2 36 36 H 1.08001 * 120.04547 * 0.07654 * 9 8 6 37 37 H 1.07997 * 119.94999 * 179.97438 * 10 9 8 38 38 H 1.08002 * 119.73459 * 179.97438 * 11 10 9 39 39 H 1.09001 * 110.31227 * 223.93037 * 14 13 12 40 40 H 1.09005 * 110.38814 * 101.82073 * 14 13 12 41 41 H 1.08994 * 110.83039 * 268.08942 * 15 14 13 42 42 H 1.09005 * 111.00228 * 144.59664 * 15 14 13 43 43 H 1.09002 * 110.30571 * 78.25352 * 16 12 11 44 44 H 1.08997 * 110.30299 * 316.19656 * 16 12 11 45 45 H 1.00902 * 111.00047 * 208.95514 * 17 2 1 46 46 H 1.08997 * 109.47340 * 300.00315 * 18 17 2 47 47 H 1.09002 * 109.46992 * 60.00252 * 18 17 2 48 48 H 0.96999 * 120.00622 * 359.97438 * 21 19 18 49 49 H 0.97005 * 119.99743 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 3.5000 -0.8263 1.1907 6 6 4.1729 -1.4290 2.1909 7 8 3.5684 -1.8857 3.1414 8 6 5.6464 -1.5346 2.1320 9 6 6.3473 -1.0114 1.0378 10 6 7.7220 -1.1146 0.9904 11 6 8.4067 -1.7324 2.0205 12 6 7.7227 -2.2535 3.1077 13 6 6.3453 -2.1579 3.1698 14 6 5.8424 -2.7981 4.4456 15 6 7.0098 -3.6764 4.9438 16 6 8.2393 -2.9651 4.3402 17 7 2.0198 -0.6926 -1.1994 18 6 2.0826 0.2224 -2.3469 19 6 2.5875 -0.5220 -3.5559 20 8 2.8680 -1.6989 -3.4700 21 7 2.7285 0.1202 -4.7324 22 6 3.1884 -0.5570 -5.8322 23 1 3.4373 -1.6052 -5.7559 24 6 3.3332 0.1050 -7.0452 25 7 3.0298 1.3802 -7.1382 26 14 3.9591 -0.8178 -8.5440 27 1 4.2279 -2.2317 -8.1781 28 1 2.9348 -0.7701 -9.6181 29 1 5.2127 -0.1851 -9.0270 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.6053 -1.7197 1.2953 34 1 1.7516 -0.1582 2.1370 35 1 3.9824 -0.4621 0.4321 36 1 5.8122 -0.5277 0.2340 37 1 8.2642 -0.7122 0.1475 38 1 9.4831 -1.8103 1.9772 39 1 4.9666 -3.4138 4.2403 40 1 5.6017 -2.0339 5.1847 41 1 6.9223 -4.6922 4.5586 42 1 7.0593 -3.6794 6.0327 43 1 8.6454 -2.2449 5.0505 44 1 9.0010 -3.6943 4.0645 45 1 2.9174 -1.1206 -1.0286 46 1 1.0872 0.6162 -2.5526 47 1 2.7590 1.0460 -2.1182 48 1 2.5046 1.0615 -4.8011 49 1 3.1306 1.8423 -7.9851 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265873246.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:34 Heat of formation + Delta-G solvation = -51.934823 kcal Electronic energy + Delta-G solvation = -29475.760167 eV Core-core repulsion = 25401.972802 eV Total energy + Delta-G solvation = -4073.787364 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.77595 -39.29251 -38.38404 -36.94462 -35.95148 -34.14269 -33.73268 -31.93858 -31.30277 -30.76269 -29.26481 -27.83325 -26.71028 -26.03488 -24.08227 -23.59819 -21.64884 -21.20916 -20.61503 -20.25691 -19.33416 -17.99872 -17.65211 -16.54214 -16.32987 -15.92866 -15.86030 -15.49952 -15.36933 -15.24621 -14.74613 -14.58609 -14.47306 -13.90828 -13.69883 -13.41975 -13.37267 -13.06798 -12.92845 -12.80334 -12.57213 -12.40965 -12.06326 -11.92355 -11.77512 -11.70019 -11.59035 -11.49851 -11.43406 -11.36766 -11.13326 -11.11760 -10.88192 -10.36871 -10.25672 -9.93311 -9.55586 -9.30991 -9.00197 -8.77576 -8.51300 -8.16535 -8.00011 -6.45302 -3.86171 0.64575 1.09868 2.72307 2.98598 3.13833 3.24881 3.32080 3.61858 3.85742 4.01443 4.10911 4.24962 4.30306 4.49745 4.64497 4.70589 4.76411 4.83758 4.92748 4.95423 5.14648 5.18132 5.21551 5.22614 5.27981 5.42391 5.49868 5.52088 5.58749 5.63694 5.65704 5.72635 5.75020 5.79298 5.89949 5.92615 5.95056 5.96462 6.07453 6.15622 6.18287 6.23548 6.30229 6.35102 6.63715 7.11897 7.30078 7.52209 7.53329 8.02740 8.06328 8.57149 9.14441 9.50198 10.01346 10.72372 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011348 B = 0.002374 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.826694 B =11791.087790 C =13720.525178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 H 0.049 0.951 4 C 0.119 3.881 5 N -0.728 5.728 6 C 0.561 3.439 7 O -0.535 6.535 8 C -0.127 4.127 9 C -0.084 4.084 10 C -0.125 4.125 11 C -0.082 4.082 12 C -0.112 4.112 13 C -0.032 4.032 14 C -0.080 4.080 15 C -0.124 4.124 16 C -0.081 4.081 17 N -0.664 5.664 18 C 0.049 3.951 19 C 0.439 3.561 20 O -0.582 6.582 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.104 0.896 24 C 0.022 3.978 25 N -0.901 5.901 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.282 1.282 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.398 0.602 36 H 0.128 0.872 37 H 0.133 0.867 38 H 0.125 0.875 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.347 0.653 46 H 0.088 0.912 47 H 0.043 0.957 48 H 0.392 0.608 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.099 -0.660 22.130 23.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.040 4.040 3 H 0.067 0.933 4 C -0.004 4.004 5 N -0.381 5.381 6 C 0.349 3.651 7 O -0.413 6.413 8 C -0.130 4.130 9 C -0.102 4.102 10 C -0.143 4.143 11 C -0.100 4.100 12 C -0.112 4.112 13 C -0.034 4.034 14 C -0.117 4.117 15 C -0.161 4.161 16 C -0.118 4.118 17 N -0.299 5.299 18 C -0.084 4.084 19 C 0.224 3.776 20 O -0.466 6.466 21 N -0.200 5.200 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.208 1.208 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.234 0.766 36 H 0.146 0.854 37 H 0.151 0.849 38 H 0.143 0.857 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.168 0.832 46 H 0.107 0.893 47 H 0.061 0.939 48 H 0.225 0.775 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.221 -1.908 22.531 23.452 hybrid contribution 1.147 1.134 -1.347 2.101 sum 7.368 -0.774 21.185 22.443 Atomic orbital electron populations 1.21732 0.93292 1.03007 1.01571 1.21825 0.97221 0.95913 0.88997 0.93321 1.21624 0.78965 1.02156 0.97686 1.45985 1.08223 1.60072 1.23799 1.18243 0.86997 0.77636 0.82198 1.90740 1.69870 1.47487 1.33157 1.19662 0.92570 1.04323 0.96437 1.21392 0.94803 0.97646 0.96392 1.21022 0.93992 1.00216 0.99064 1.20837 1.00042 0.96476 0.92624 1.20679 0.93895 1.00162 0.96426 1.20635 0.93617 0.94551 0.94548 1.21098 0.98754 0.98751 0.93077 1.22361 0.93927 0.99154 1.00681 1.21052 0.98355 0.98624 0.93719 1.60123 1.34800 1.32271 1.02723 1.21766 1.01556 0.93771 0.91297 1.19789 0.85092 0.88221 0.84463 1.90537 1.55250 1.16070 1.84725 1.41873 1.57691 1.12424 1.07981 1.19752 1.39834 0.96449 0.86777 0.87860 1.25265 0.97649 0.95786 0.99247 1.69620 1.48671 1.08862 1.27107 0.85806 0.78237 0.79650 0.80705 1.19199 1.20714 1.20759 0.91474 0.92457 0.91955 0.90161 0.90690 0.76580 0.85435 0.84912 0.85739 0.89219 0.89871 0.90880 0.90426 0.90170 0.90592 0.83202 0.89336 0.93869 0.77471 0.91904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.42 37.16 0.35 -1.14 16 2 C 0.07 0.83 2.81 -67.71 -0.19 0.64 16 3 H 0.05 0.52 7.80 -51.93 -0.41 0.12 16 4 C 0.12 1.38 5.31 -4.04 -0.02 1.36 16 5 N -0.73 -8.67 4.94 -61.25 -0.30 -8.97 16 6 C 0.56 7.63 7.77 -12.33 -0.10 7.53 16 7 O -0.53 -8.47 14.70 5.32 0.08 -8.39 16 8 C -0.13 -1.57 5.90 -104.69 -0.62 -2.19 16 9 C -0.08 -0.91 9.56 -39.00 -0.37 -1.28 16 10 C -0.13 -1.22 10.03 -39.69 -0.40 -1.61 16 11 C -0.08 -0.75 10.03 -39.43 -0.40 -1.15 16 12 C -0.11 -1.11 6.14 -104.15 -0.64 -1.75 16 13 C -0.03 -0.38 6.04 -103.74 -0.63 -1.01 16 14 C -0.08 -0.83 5.58 -26.86 -0.15 -0.98 16 15 C -0.12 -0.94 7.08 -25.33 -0.18 -1.12 16 16 C -0.08 -0.60 6.76 -26.84 -0.18 -0.78 16 17 N -0.66 -10.23 5.93 -107.99 -0.64 -10.87 16 18 C 0.05 0.82 5.96 -4.98 -0.03 0.79 16 19 C 0.44 10.07 7.82 -10.99 -0.09 9.99 16 20 O -0.58 -15.53 15.78 5.55 0.09 -15.44 16 21 N -0.56 -13.94 5.29 -10.96 -0.06 -14.00 16 22 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 16 23 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.16 13.05 55.50 0.72 -23.44 16 26 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 27 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 29 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.70 7.45 -51.93 -0.39 0.31 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.40 4.32 5.42 -40.82 -0.22 4.10 16 36 H 0.13 1.22 6.42 -52.49 -0.34 0.88 16 37 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.09 1.07 7.18 -51.93 -0.37 0.70 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.35 5.53 6.41 -39.29 -0.25 5.28 16 46 H 0.09 1.38 7.44 -51.93 -0.39 1.00 16 47 H 0.04 0.63 8.06 -51.93 -0.42 0.21 16 48 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 49 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 400.89 15.07 6.04 6.04 Total: -1.00 -32.96 400.89 -10.23 -43.19 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: -7.26 Total: 16.66 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -3.87 Total: -0.58 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: -0.28 Total: -57.27 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: 0.17 Total: -23.83 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.96 -10.23 -43.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265873246.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.748 kcal (2) G-P(sol) polarization free energy of solvation -32.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds