Wall clock time and date at job start Wed Apr 1 2020 03:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47276 * 2 1 4 4 C 1.47194 * 109.47274 * 239.99313 * 2 1 3 5 5 N 2.60797 * 109.47404 * 239.99288 * 2 1 3 6 6 C 1.50706 * 109.46901 * 119.99124 * 2 1 3 7 7 O 1.21283 * 119.99503 * 116.76034 * 6 2 1 8 8 N 1.34783 * 120.00140 * 296.76527 * 6 2 1 9 9 C 1.46498 * 119.99747 * 184.91059 * 8 6 2 10 10 H 1.08994 * 110.36037 * 332.57467 * 9 8 6 11 11 C 1.55920 * 110.40089 * 210.24655 * 9 8 6 12 12 H 1.09001 * 115.92470 * 41.12525 * 11 9 8 13 13 C 1.55930 * 104.49848 * 170.81992 * 11 9 8 14 14 C 1.54581 * 104.64405 * 70.27494 * 13 11 9 15 15 C 1.55920 * 104.64428 * 0.02562 * 14 13 11 16 16 H 1.08999 * 115.92440 * 160.03219 * 15 14 13 17 17 C 1.56951 * 100.65190 * 274.87516 * 11 9 8 18 18 C 1.54581 * 110.49698 * 94.96691 * 9 8 6 19 19 H 1.08997 * 110.40387 * 237.63028 * 18 9 8 20 20 C 1.50706 * 110.40596 * 0.05091 * 18 9 8 21 21 O 1.21279 * 120.00043 * 66.75874 * 20 18 9 22 22 N 1.34769 * 119.99574 * 246.76835 * 20 18 9 23 23 C 1.47067 * 136.06445 * 4.56830 * 22 20 18 24 24 C 1.53756 * 87.88987 * 152.97154 * 23 22 20 25 25 C 1.50693 * 114.08664 * 139.78514 * 24 23 22 26 26 H 1.08005 * 120.00335 * 262.20166 * 25 24 23 27 27 C 1.37880 * 120.00131 * 82.20139 * 25 24 23 28 28 N 1.31510 * 119.99795 * 5.38010 * 27 25 24 29 29 Si 1.86802 * 119.99880 * 185.37536 * 27 25 24 30 30 H 1.48501 * 109.47008 * 60.00499 * 29 27 25 31 31 H 1.48505 * 109.46981 * 180.02562 * 29 27 25 32 32 H 1.48502 * 109.47103 * 300.00042 * 29 27 25 33 33 C 1.47070 * 136.05358 * 184.95183 * 22 20 18 34 34 H 1.09000 * 109.47276 * 180.02562 * 1 2 3 35 35 H 1.09004 * 109.47429 * 300.00874 * 1 2 3 36 36 H 1.08996 * 109.46848 * 60.00559 * 1 2 3 37 37 H 0.96996 * 119.99719 * 4.91512 * 8 6 2 38 38 H 1.09004 * 110.40261 * 189.06974 * 13 11 9 39 39 H 1.08996 * 110.40029 * 311.48636 * 13 11 9 40 40 H 1.08995 * 110.40078 * 241.21151 * 14 13 11 41 41 H 1.09003 * 110.49829 * 118.84110 * 14 13 11 42 42 H 1.08999 * 112.02909 * 63.17136 * 17 11 9 43 43 H 1.09000 * 112.02943 * 189.69687 * 17 11 9 44 44 H 1.08999 * 113.47372 * 267.70967 * 23 22 20 45 45 H 1.09002 * 113.46063 * 38.14581 * 23 22 20 46 46 H 1.09008 * 114.39148 * 272.68212 * 24 23 22 47 47 H 0.97001 * 119.99980 * 184.99794 * 28 27 25 48 48 H 1.08996 * 113.47017 * 321.85901 * 33 22 20 49 49 H 1.09009 * 113.46620 * 92.24073 * 33 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6940 -1.2017 5 7 2.3994 -1.2297 -2.1292 6 6 2.0323 -0.7103 1.2306 7 8 2.6803 -1.7295 1.1204 8 7 1.7613 -0.2128 2.4537 9 6 2.3387 -0.8413 3.6444 10 1 2.5305 -1.8982 3.4600 11 6 1.3868 -0.6667 4.8668 12 1 0.3237 -0.7985 4.6656 13 6 2.0037 -1.5741 5.9748 14 6 3.3074 -0.8539 6.3886 15 6 3.3551 0.4210 5.4923 16 1 3.9971 1.2280 5.8454 17 6 1.8255 0.7517 5.3759 18 6 3.6424 -0.1211 4.0582 19 1 4.4752 -0.8241 4.0774 20 6 3.9359 1.0173 3.1153 21 8 3.2027 1.9829 3.0837 22 7 5.0130 0.9622 2.3072 23 6 6.0551 -0.0282 1.9975 24 6 6.1873 0.6278 0.6132 25 6 7.6072 0.7497 0.1234 26 1 8.1414 1.6808 0.2422 27 6 8.2244 -0.3275 -0.4764 28 7 7.5425 -1.4260 -0.7169 29 14 10.0293 -0.2265 -0.9474 30 1 10.8449 0.0231 0.2682 31 1 10.4501 -1.5063 -1.5722 32 1 10.2274 0.8840 -1.9132 33 6 5.6675 1.8689 1.3519 34 1 -0.3634 -1.0276 0.0005 35 1 -0.3634 0.5140 0.8899 36 1 -0.3633 0.5137 -0.8900 37 1 1.1840 0.5612 2.5454 38 1 1.3255 -1.6504 6.8247 39 1 2.2265 -2.5634 5.5752 40 1 4.1711 -1.4892 6.1925 41 1 3.2722 -0.5763 7.4421 42 1 1.6303 1.5294 4.6377 43 1 1.3851 0.9931 6.3433 44 1 6.9485 0.0744 2.6135 45 1 5.6833 -1.0522 1.9604 46 1 5.5020 0.2353 -0.1382 47 1 7.9928 -2.2085 -1.0717 48 1 4.9657 2.4612 0.7649 49 1 6.4581 2.4724 1.7980 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271222373.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:17 Heat of formation + Delta-G solvation = -24.338323 kcal Electronic energy + Delta-G solvation = -32293.653901 eV Core-core repulsion = 28221.063210 eV Total energy + Delta-G solvation = -4072.590690 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.39387 -40.75429 -40.29929 -38.27538 -37.70245 -35.46055 -34.68198 -34.14410 -31.86869 -30.34937 -29.71722 -28.54502 -27.01752 -26.71322 -26.18591 -24.00350 -22.50594 -21.70355 -21.07476 -20.32697 -19.63807 -18.83346 -18.77715 -18.37028 -17.85903 -17.35268 -16.90206 -16.62476 -16.16828 -16.02311 -15.89828 -15.74419 -15.16137 -14.99556 -14.66884 -14.53672 -14.16863 -14.10089 -13.78696 -13.74644 -13.32466 -13.30879 -13.24757 -12.91722 -12.81627 -12.80932 -12.70404 -12.45819 -12.44952 -12.25971 -12.21685 -12.03076 -12.00505 -11.76593 -11.68973 -11.38923 -11.19560 -11.02285 -10.96678 -10.60109 -10.41286 -10.13965 -9.50896 -8.19250 -6.33347 1.33506 1.42430 1.43592 1.48260 1.51952 1.67763 1.70761 2.03241 2.28492 2.41959 2.74667 3.10175 3.35640 3.45649 3.52281 3.68387 3.78404 3.87942 4.07723 4.11724 4.17926 4.21969 4.33401 4.33602 4.39306 4.43788 4.53583 4.61698 4.66149 4.68464 4.74616 4.77939 4.80128 4.84572 4.93409 5.01528 5.07284 5.13839 5.18998 5.19975 5.22702 5.29204 5.43324 5.47643 5.52116 5.54399 5.75359 6.17732 6.35413 6.51881 6.76277 6.94303 7.13574 7.25790 7.38126 8.89588 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009931 B = 0.004404 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.809899 B = 6356.981103 C = 8042.878405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.010 4.010 3 H 0.155 0.845 4 C 0.235 3.765 5 N -0.470 5.470 6 C 0.521 3.479 7 O -0.574 6.574 8 N -0.696 5.696 9 C 0.156 3.844 10 H 0.081 0.919 11 C -0.089 4.089 12 H 0.134 0.866 13 C -0.116 4.116 14 C -0.120 4.120 15 C -0.083 4.083 16 H 0.094 0.906 17 C -0.117 4.117 18 C -0.123 4.123 19 H 0.070 0.930 20 C 0.550 3.450 21 O -0.565 6.565 22 N -0.643 5.643 23 C 0.118 3.882 24 C 0.026 3.974 25 C -0.529 4.529 26 H 0.072 0.928 27 C 0.017 3.983 28 N -0.922 5.922 29 Si 0.958 3.042 30 H -0.261 1.261 31 H -0.291 1.291 32 H -0.268 1.268 33 C 0.112 3.888 34 H 0.067 0.933 35 H 0.115 0.885 36 H 0.096 0.904 37 H 0.420 0.580 38 H 0.095 0.905 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.077 0.923 45 H 0.035 0.965 46 H 0.019 0.981 47 H 0.261 0.739 48 H 0.062 0.938 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.641 4.811 16.340 24.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.035 4.035 3 H 0.173 0.827 4 C -0.083 4.083 5 N -0.146 5.146 6 C 0.306 3.694 7 O -0.452 6.452 8 N -0.348 5.348 9 C 0.051 3.949 10 H 0.099 0.901 11 C -0.108 4.108 12 H 0.152 0.848 13 C -0.154 4.154 14 C -0.158 4.158 15 C -0.102 4.102 16 H 0.112 0.888 17 C -0.155 4.155 18 C -0.145 4.145 19 H 0.088 0.912 20 C 0.342 3.658 21 O -0.446 6.446 22 N -0.376 5.376 23 C -0.005 4.005 24 C 0.007 3.993 25 C -0.567 4.567 26 H 0.090 0.910 27 C -0.183 4.183 28 N -0.560 5.560 29 Si 0.783 3.217 30 H -0.186 1.186 31 H -0.217 1.217 32 H -0.193 1.193 33 C -0.011 4.011 34 H 0.086 0.914 35 H 0.134 0.866 36 H 0.115 0.885 37 H 0.259 0.741 38 H 0.114 0.886 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.107 0.893 42 H 0.095 0.905 43 H 0.114 0.886 44 H 0.095 0.905 45 H 0.053 0.947 46 H 0.037 0.963 47 H 0.070 0.930 48 H 0.080 0.920 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.172 3.634 14.854 22.994 hybrid contribution 1.509 -0.097 -0.544 1.607 sum -15.663 3.537 14.310 21.509 Atomic orbital electron populations 1.21871 0.85601 1.04672 1.06851 1.19160 1.01639 0.99926 0.82731 0.82730 1.28900 0.92418 0.92858 0.94154 1.81183 1.08919 1.09810 1.14703 1.20395 0.79151 0.84293 0.85531 1.90815 1.40934 1.26392 1.87107 1.45711 1.50957 1.33964 1.04167 1.22139 0.91481 0.96183 0.85116 0.90076 1.23902 0.98859 0.96396 0.91645 0.84804 1.22603 0.96585 0.97762 0.98426 1.22674 0.98104 0.95057 0.99962 1.23456 0.98663 0.97748 0.90345 0.88793 1.23692 0.92958 0.96399 1.02413 1.23008 0.99674 0.95429 0.96418 0.91157 1.20258 0.78720 0.88004 0.78855 1.90527 1.48487 1.35814 1.69764 1.50029 1.25682 1.20302 1.41580 1.23186 0.87917 0.91725 0.97674 1.20130 0.95931 0.92054 0.91217 1.21236 0.97755 0.99057 1.38664 0.91003 1.25867 1.02516 0.95439 0.94433 1.70146 1.37247 1.03693 1.44877 0.85612 0.79959 0.77177 0.78975 1.18577 1.21731 1.19317 1.23096 0.94470 0.94812 0.88688 0.91426 0.86628 0.88502 0.74095 0.88606 0.91999 0.92618 0.89349 0.90481 0.88632 0.90451 0.94679 0.96292 0.93003 0.91958 0.89608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 9.07 71.98 0.65 -1.09 16 2 C -0.01 -0.25 3.10 -13.35 -0.04 -0.29 16 3 H 0.16 3.32 8.14 -2.39 -0.02 3.30 16 4 C 0.24 8.43 13.88 89.44 1.24 9.67 16 5 N -0.47 -20.44 18.54 20.00 0.37 -20.07 16 6 C 0.52 15.87 6.78 87.66 0.59 16.46 16 7 O -0.57 -24.29 15.58 -3.04 -0.05 -24.33 16 8 N -0.70 -16.10 3.32 -435.22 -1.45 -17.55 16 9 C 0.16 3.68 2.69 46.54 0.13 3.81 16 10 H 0.08 2.30 7.04 -2.39 -0.02 2.28 16 11 C -0.09 -1.27 4.79 -7.38 -0.04 -1.31 16 12 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 13 C -0.12 -1.53 6.21 32.15 0.20 -1.33 16 14 C -0.12 -1.89 6.21 32.14 0.20 -1.69 16 15 C -0.08 -1.69 4.48 -7.37 -0.03 -1.72 16 16 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 17 C -0.12 -1.84 6.26 33.36 0.21 -1.63 16 18 C -0.12 -3.39 2.71 -9.97 -0.03 -3.41 16 19 H 0.07 2.22 7.30 -2.39 -0.02 2.20 16 20 C 0.55 18.74 5.78 87.66 0.51 19.25 16 21 O -0.57 -19.17 14.83 -3.02 -0.04 -19.22 16 22 N -0.64 -25.56 3.69 -857.81 -3.16 -28.73 16 23 C 0.12 5.41 7.61 83.26 0.63 6.04 16 24 C 0.03 1.31 3.80 -11.12 -0.04 1.27 16 25 C -0.53 -28.35 8.81 25.60 0.23 -28.13 16 26 H 0.07 3.63 7.82 -2.91 -0.02 3.61 16 27 C 0.02 0.97 5.45 84.66 0.46 1.43 16 28 N -0.92 -55.99 13.29 21.45 0.28 -55.70 16 29 Si 0.96 43.32 29.54 68.60 2.03 45.35 16 30 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 31 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 32 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 33 C 0.11 4.61 8.18 83.17 0.68 5.29 16 34 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.12 0.75 7.65 -2.38 -0.02 0.73 16 36 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.42 7.27 7.61 -92.71 -0.71 6.57 16 38 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.06 0.93 7.83 -2.39 -0.02 0.91 16 40 H 0.05 1.01 7.83 -2.39 -0.02 1.00 16 41 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.08 1.47 6.26 -2.39 -0.01 1.45 16 43 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.08 3.41 8.10 -2.39 -0.02 3.39 16 45 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.02 1.12 8.14 -2.38 -0.02 1.10 16 47 H 0.26 15.29 8.32 -92.71 -0.77 14.51 16 48 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 49 H 0.09 3.32 8.10 -2.38 -0.02 3.30 16 Total: -1.00 -78.86 399.31 3.80 -75.06 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 0.26 Total: 22.56 kcal Atomic # 6 Polarization: 17.07 SS G_CDS: 5.55 Total: 22.62 kcal Atomic # 7 Polarization: -118.09 SS G_CDS: -3.95 Total: -122.05 kcal Atomic # 8 Polarization: -43.46 SS G_CDS: -0.09 Total: -43.55 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -78.86 3.80 -75.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271222373.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.724 kcal (2) G-P(sol) polarization free energy of solvation -78.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds