Wall clock time and date at job start Wed Apr 1 2020 02:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47242 * 2 1 4 4 N 1.46500 * 109.47160 * 120.00385 * 2 1 3 5 5 C 1.36938 * 120.00035 * 275.00170 * 4 2 1 6 6 H 1.07995 * 119.99553 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99754 * 180.02562 * 5 4 2 8 8 N 1.31613 * 120.00499 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99636 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47533 * 59.99581 * 9 7 5 11 11 H 1.48499 * 109.46733 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.46815 * 299.99241 * 9 7 5 13 13 C 1.53007 * 109.47213 * 240.00225 * 2 1 3 14 14 H 1.09003 * 109.49701 * 185.00137 * 13 2 1 15 15 C 1.53041 * 109.49301 * 64.93614 * 13 2 1 16 16 C 1.53044 * 109.53331 * 178.65393 * 15 13 2 17 17 C 1.53186 * 109.31966 * 61.36451 * 16 15 13 18 18 N 1.46931 * 108.77064 * 305.36719 * 17 16 15 19 19 C 1.34774 * 120.62586 * 233.57972 * 18 17 16 20 20 O 1.21366 * 119.99818 * 171.28382 * 19 18 17 21 21 C 1.49353 * 120.00351 * 351.28559 * 19 18 17 22 22 O 1.21373 * 119.99763 * 353.42662 * 21 19 18 23 23 N 1.34782 * 119.99959 * 173.42796 * 21 19 18 24 24 C 1.39728 * 119.99502 * 183.62478 * 23 21 19 25 25 C 1.38922 * 120.07710 * 324.22167 * 24 23 21 26 26 C 1.38099 * 119.92160 * 179.81303 * 25 24 23 27 27 C 1.38295 * 120.07375 * 0.44231 * 26 25 24 28 28 C 1.38291 * 120.15335 * 359.79400 * 27 26 25 29 29 C 1.38094 * 120.07699 * 359.97438 * 28 27 26 30 30 C 1.46925 * 118.74332 * 53.60795 * 18 17 16 31 31 H 1.09003 * 109.47069 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46973 * 299.99553 * 1 2 3 33 33 H 1.08999 * 109.46792 * 59.99787 * 1 2 3 34 34 H 0.97003 * 120.00319 * 95.00248 * 4 2 1 35 35 H 0.96997 * 120.00748 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.46303 * 298.67082 * 15 13 2 37 37 H 1.08996 * 109.46505 * 58.63326 * 15 13 2 38 38 H 1.09008 * 109.49613 * 181.32066 * 16 15 13 39 39 H 1.08999 * 109.49400 * 301.37395 * 16 15 13 40 40 H 1.09000 * 109.58476 * 65.14863 * 17 16 15 41 41 H 1.08996 * 109.59146 * 185.57982 * 17 16 15 42 42 H 0.96998 * 120.00134 * 3.62280 * 23 21 19 43 43 H 1.07996 * 120.04004 * 0.02562 * 25 24 23 44 44 H 1.08003 * 119.96199 * 180.21072 * 26 25 24 45 45 H 1.08005 * 119.92154 * 179.76559 * 27 26 25 46 46 H 1.08005 * 119.95929 * 179.97438 * 28 27 26 47 47 H 1.08000 * 120.04074 * 180.02562 * 29 28 27 48 48 H 1.08997 * 109.58822 * 186.60401 * 30 18 17 49 49 H 1.08998 * 109.58853 * 66.16908 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1491 -0.0076 2.3758 6 1 1.8926 1.0403 2.4242 7 6 2.6123 -0.6620 3.5089 8 7 2.9254 -1.9390 3.4498 9 14 2.7900 0.2696 5.1183 10 1 1.4673 0.8054 5.5289 11 1 3.2991 -0.6489 6.1683 12 1 3.7445 1.3927 4.9373 13 6 2.0400 -0.7212 -1.2493 14 1 3.1264 -0.7997 -1.2061 15 6 1.6341 0.0680 -2.4961 16 6 2.1726 -0.6348 -3.7444 17 6 1.5624 -2.0367 -3.8397 18 7 1.8245 -2.7527 -2.5837 19 6 2.4164 -3.9635 -2.5942 20 8 2.7710 -4.4746 -1.5521 21 6 2.6362 -4.6761 -3.8882 22 8 2.1770 -4.2228 -4.9162 23 7 3.3445 -5.8225 -3.9144 24 6 3.6147 -6.4490 -5.1337 25 6 2.6711 -6.4249 -6.1530 26 6 2.9431 -7.0419 -7.3582 27 6 4.1494 -7.6910 -7.5478 28 6 5.0890 -7.7211 -6.5336 29 6 4.8255 -7.1022 -5.3275 30 6 1.4283 -2.1241 -1.3162 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 2.2491 -1.6319 1.1525 35 1 3.2494 -2.3962 4.2415 36 1 0.5470 0.1249 -2.5519 37 1 2.0477 1.0748 -2.4393 38 1 1.9032 -0.0598 -4.6304 39 1 3.2577 -0.7135 -3.6780 40 1 0.4868 -1.9571 -3.9974 41 1 2.0166 -2.5773 -4.6701 42 1 3.6667 -6.2126 -3.0868 43 1 1.7274 -5.9214 -6.0043 44 1 2.2113 -7.0206 -8.1523 45 1 4.3580 -8.1759 -8.4901 46 1 6.0299 -8.2293 -6.6849 47 1 5.5599 -7.1257 -4.5360 48 1 1.7940 -2.7224 -0.4816 49 1 0.3418 -2.0516 -1.2681 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271644456.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:25 Heat of formation + Delta-G solvation = -11.478939 kcal Electronic energy + Delta-G solvation = -30379.631739 eV Core-core repulsion = 26307.598673 eV Total energy + Delta-G solvation = -4072.033066 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.40598 -39.87998 -38.56704 -37.84948 -35.78997 -34.92063 -32.91051 -31.91254 -31.23358 -30.10858 -29.79229 -27.92144 -26.45114 -24.62107 -24.08062 -23.22773 -23.05431 -22.00978 -21.02395 -20.15390 -18.77815 -18.21477 -17.54283 -17.24521 -16.84939 -16.22565 -16.15022 -15.58923 -15.01394 -14.94337 -14.77775 -14.39515 -14.12922 -14.02534 -13.81602 -13.72350 -13.62615 -13.17855 -13.12481 -12.89726 -12.70684 -12.46450 -12.18717 -11.87818 -11.69777 -11.56385 -11.42014 -10.98903 -10.91667 -10.83177 -10.65383 -10.61488 -10.44889 -10.26468 -10.24226 -9.90579 -9.55192 -9.32788 -9.14860 -8.87575 -8.60408 -8.49690 -6.92586 -5.71192 -3.00774 0.75883 1.09113 1.43316 2.13716 3.02890 3.32186 3.46295 3.50584 3.51787 3.51849 4.09978 4.59205 4.60927 4.64506 4.84937 4.89096 5.00880 5.05103 5.09344 5.18421 5.21045 5.23679 5.43420 5.57753 5.61003 5.67579 5.75019 5.79246 5.86331 5.89304 5.94928 5.96990 6.01503 6.10836 6.12767 6.18571 6.22555 6.26680 6.35278 6.38283 6.46437 6.61149 6.67661 6.73557 6.79989 6.89936 7.11874 7.25593 7.51056 7.73342 7.88032 8.46546 9.57410 10.15175 10.49381 11.50930 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016855 B = 0.002377 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.790367 B =11779.119753 C =13032.840859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.180 3.820 3 H 0.050 0.950 4 N -0.725 5.725 5 C -0.240 4.240 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.930 5.930 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.103 4.103 14 H 0.075 0.925 15 C -0.116 4.116 16 C -0.134 4.134 17 C 0.070 3.930 18 N -0.574 5.574 19 C 0.502 3.498 20 O -0.509 6.509 21 C 0.514 3.486 22 O -0.496 6.496 23 N -0.646 5.646 24 C 0.140 3.860 25 C -0.119 4.119 26 C -0.103 4.103 27 C -0.133 4.133 28 C -0.102 4.102 29 C -0.139 4.139 30 C 0.111 3.889 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.039 0.961 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.133 0.867 42 H 0.425 0.575 43 H 0.139 0.861 44 H 0.126 0.874 45 H 0.123 0.877 46 H 0.127 0.873 47 H 0.129 0.871 48 H 0.102 0.898 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.149 -8.474 -24.330 25.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.070 3.930 3 H 0.068 0.932 4 N -0.367 5.367 5 C -0.371 4.371 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.578 5.578 9 Si 0.736 3.264 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.214 1.214 13 C -0.123 4.123 14 H 0.094 0.906 15 C -0.154 4.154 16 C -0.172 4.172 17 C -0.052 4.052 18 N -0.306 5.306 19 C 0.283 3.717 20 O -0.385 6.385 21 C 0.297 3.703 22 O -0.371 6.371 23 N -0.292 5.292 24 C 0.046 3.954 25 C -0.139 4.139 26 C -0.121 4.121 27 C -0.152 4.152 28 C -0.121 4.121 29 C -0.159 4.159 30 C -0.009 4.009 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.219 0.781 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.150 0.850 42 H 0.263 0.737 43 H 0.157 0.843 44 H 0.144 0.856 45 H 0.141 0.859 46 H 0.145 0.855 47 H 0.147 0.853 48 H 0.121 0.879 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.284 -8.262 -24.269 25.638 hybrid contribution 0.305 0.093 1.435 1.470 sum 0.022 -8.169 -22.834 24.251 Atomic orbital electron populations 1.22581 0.99499 1.00856 1.00053 1.20182 0.91839 0.95352 0.85654 0.93175 1.42486 1.78146 1.10776 1.05299 1.19171 1.36730 0.93813 0.87370 0.91290 1.24744 1.02208 0.95961 0.98011 1.69654 1.50645 1.08593 1.28954 0.86300 0.77708 0.78591 0.83756 1.21353 1.21756 1.21355 1.21786 1.01056 0.93880 0.95553 0.90649 1.21644 1.01126 0.98993 0.93640 1.21941 1.00924 0.95637 0.98702 1.22816 1.01729 0.93571 0.87076 1.48044 1.56831 1.16232 1.09533 1.19696 0.80332 0.83073 0.88585 1.90857 1.48558 1.66190 1.32849 1.20578 0.78490 0.81087 0.90108 1.90503 1.47612 1.64024 1.34974 1.43232 1.53304 1.23343 1.09327 1.17787 0.94237 0.96798 0.86535 1.21300 0.99411 0.99944 0.93196 1.21080 0.97238 0.96949 0.96881 1.21193 0.94345 1.00373 0.99297 1.20965 0.99490 0.98968 0.92664 1.20998 0.95073 1.00990 0.98849 1.22069 0.99745 0.94331 0.84801 0.93284 0.92809 0.94235 0.78123 0.93464 0.91459 0.91588 0.90807 0.91801 0.91318 0.85026 0.73663 0.84344 0.85589 0.85904 0.85510 0.85335 0.87928 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.95 8.77 37.16 0.33 -2.63 16 2 C 0.18 3.48 2.67 -67.93 -0.18 3.30 16 3 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 4 N -0.73 -18.07 5.06 -53.43 -0.27 -18.34 16 5 C -0.24 -6.65 9.93 -15.06 -0.15 -6.80 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -28.55 13.06 55.49 0.72 -27.82 16 9 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 C -0.10 -1.67 2.27 -90.49 -0.21 -1.88 16 14 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 15 C -0.12 -1.47 4.89 -26.69 -0.13 -1.60 16 16 C -0.13 -1.50 6.08 -26.61 -0.16 -1.66 16 17 C 0.07 0.83 5.98 -3.71 -0.02 0.81 16 18 N -0.57 -8.33 2.97 -173.32 -0.52 -8.84 16 19 C 0.50 7.63 7.73 -11.63 -0.09 7.54 16 20 O -0.51 -9.25 15.93 5.48 0.09 -9.16 16 21 C 0.51 6.58 7.57 -11.63 -0.09 6.49 16 22 O -0.50 -6.46 10.68 5.48 0.06 -6.40 16 23 N -0.65 -7.06 5.32 -10.30 -0.05 -7.11 16 24 C 0.14 1.44 6.28 -83.75 -0.53 0.92 16 25 C -0.12 -1.21 8.68 -39.38 -0.34 -1.55 16 26 C -0.10 -0.85 10.04 -39.61 -0.40 -1.25 16 27 C -0.13 -0.97 10.04 -39.54 -0.40 -1.37 16 28 C -0.10 -0.76 10.04 -39.61 -0.40 -1.15 16 29 C -0.14 -1.19 9.97 -39.38 -0.39 -1.59 16 30 C 0.11 1.83 5.19 -3.71 -0.02 1.81 16 31 H 0.05 0.85 6.23 -51.93 -0.32 0.53 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.04 0.56 6.59 -51.93 -0.34 0.22 16 34 H 0.38 10.31 6.47 -40.82 -0.26 10.05 16 35 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 36 H 0.07 0.80 6.63 -51.93 -0.34 0.46 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.13 1.59 4.32 -54.80 -0.24 1.36 16 42 H 0.42 4.19 8.30 -40.82 -0.34 3.85 16 43 H 0.14 1.51 6.31 -52.49 -0.33 1.18 16 44 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 45 H 0.12 0.62 8.06 -52.48 -0.42 0.19 16 46 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 47 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 48 H 0.10 2.04 5.82 -51.93 -0.30 1.74 16 49 H 0.08 1.22 6.06 -51.93 -0.31 0.90 16 LS Contribution 387.56 15.07 5.84 5.84 Total: -1.00 -32.45 387.56 -9.42 -41.87 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -6.99 Total: 13.46 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -3.27 Total: -1.09 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: -0.12 Total: -62.11 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: 0.15 Total: -15.56 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.45 -9.42 -41.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271644456.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.388 kcal (2) G-P(sol) polarization free energy of solvation -32.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds