Wall clock time and date at job start Wed Apr 1 2020 03:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 N 1.46901 * 109.47113 * 184.99881 * 4 2 1 6 6 C 1.46900 * 111.00082 * 179.97438 * 5 4 2 7 7 C 1.50700 * 109.47346 * 180.02562 * 6 5 4 8 8 O 1.21290 * 119.99726 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00009 * 180.02562 * 7 6 5 10 10 C 1.37091 * 119.99791 * 179.97438 * 9 7 6 11 11 H 1.08005 * 120.00383 * 0.02562 * 10 9 7 12 12 C 1.38949 * 120.00018 * 180.02562 * 10 9 7 13 13 N 1.31419 * 120.00002 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 119.99784 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47214 * 90.00343 * 14 12 10 16 16 H 1.48506 * 109.47107 * 209.99931 * 14 12 10 17 17 H 1.48495 * 109.47091 * 329.99850 * 14 12 10 18 18 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 19 19 C 1.34768 * 120.00056 * 275.00296 * 18 2 1 20 20 O 1.21554 * 120.00177 * 359.97438 * 19 18 2 21 21 C 1.47851 * 120.00017 * 179.97438 * 19 18 2 22 22 C 1.39573 * 120.14129 * 359.72471 * 21 19 18 23 23 C 1.37960 * 119.84915 * 179.74672 * 22 21 19 24 24 C 1.38359 * 120.14769 * 0.52756 * 23 22 21 25 25 C 1.50695 * 119.85945 * 179.76418 * 24 23 22 26 26 C 1.53001 * 117.49757 * 8.73131 * 25 24 23 27 27 C 1.53000 * 117.49908 * 300.07011 * 25 24 23 28 28 C 1.38361 * 120.28931 * 359.74407 * 24 23 22 29 29 C 1.37954 * 120.14653 * 359.97438 * 28 24 23 30 30 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 33 33 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 34 34 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 35 35 H 1.00898 * 111.00040 * 303.95150 * 5 4 2 36 36 H 1.08995 * 109.47422 * 300.00193 * 6 5 4 37 37 H 1.08997 * 109.46587 * 60.00139 * 6 5 4 38 38 H 0.96994 * 119.99949 * 0.02562 * 9 7 6 39 39 H 0.97004 * 119.99408 * 179.97438 * 13 12 10 40 40 H 0.97001 * 119.99547 * 95.00125 * 18 2 1 41 41 H 1.07992 * 120.07609 * 0.02562 * 22 21 19 42 42 H 1.08003 * 119.92911 * 180.27626 * 23 22 21 43 43 H 1.09005 * 115.55435 * 154.39435 * 25 24 23 44 44 H 1.09001 * 117.49527 * 359.97438 * 26 25 24 45 45 H 1.09000 * 117.50681 * 145.01849 * 26 25 24 46 46 H 1.08994 * 117.49709 * 214.97406 * 27 25 24 47 47 H 1.08995 * 117.49711 * 359.97339 * 27 25 24 48 48 H 1.08007 * 119.92768 * 179.97438 * 28 24 23 49 49 H 1.08006 * 120.07612 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5040 -0.8266 -1.1905 6 6 4.0303 -1.5157 -2.3763 7 6 5.5316 -1.6053 -2.2804 8 8 6.1066 -1.1403 -1.3190 9 7 6.2353 -2.2011 -3.2633 10 6 7.6011 -2.2821 -3.1762 11 1 8.1131 -1.8688 -2.3198 12 6 8.3267 -2.8959 -4.1898 13 7 9.6359 -2.9739 -4.1061 14 14 7.4412 -3.6100 -5.6715 15 1 7.3222 -2.5707 -6.7254 16 1 8.2118 -4.7645 -6.1996 17 1 6.0860 -4.0628 -5.2674 18 7 2.0184 -0.6906 1.1961 19 6 2.1471 -0.0184 2.3570 20 8 1.8584 1.1611 2.4116 21 6 2.6395 -0.7155 3.5643 22 6 2.9664 -2.0712 3.5065 23 6 3.4303 -2.7144 4.6353 24 6 3.5613 -2.0214 5.8256 25 6 4.0636 -2.7317 7.0561 26 6 4.6027 -4.1528 6.8807 27 6 3.2518 -3.9252 7.5637 28 6 3.2336 -0.6787 5.8911 29 6 2.7741 -0.0222 4.7682 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.6055 -1.7197 -1.2953 34 1 1.7516 -0.1582 -2.1371 35 1 3.9280 0.0826 -1.0825 36 1 3.6095 -2.5197 -2.4297 37 1 3.7557 -0.9585 -3.2720 38 1 5.7756 -2.5719 -4.0327 39 1 10.1423 -3.4028 -4.8136 40 1 2.2491 -1.6318 1.1525 41 1 2.8608 -2.6142 2.5790 42 1 3.6879 -3.7623 4.5909 43 1 4.5466 -2.0985 7.8003 44 1 4.5937 -4.5740 5.8754 45 1 5.4401 -4.4548 7.5098 46 1 3.2011 -4.0773 8.6417 47 1 2.3542 -4.1962 7.0079 48 1 3.3377 -0.1435 6.8234 49 1 2.5182 1.0258 4.8207 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275030274.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:06 Heat of formation + Delta-G solvation = -18.478803 kcal Electronic energy + Delta-G solvation = -28993.988672 eV Core-core repulsion = 24921.652070 eV Total energy + Delta-G solvation = -4072.336603 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.43941 -39.24292 -38.49316 -37.02210 -36.45939 -34.38414 -33.75456 -32.00823 -31.66019 -30.95230 -30.19091 -27.78288 -25.27764 -24.80941 -23.17049 -23.15786 -22.45111 -21.91579 -20.85633 -20.09985 -19.40447 -18.45470 -18.05270 -16.91911 -16.53902 -15.91836 -15.46297 -15.35799 -15.11041 -15.00181 -14.88309 -14.54405 -14.31087 -14.15917 -13.91725 -13.59215 -13.38158 -13.20392 -13.09139 -12.86938 -12.70496 -12.48877 -12.25120 -12.10441 -11.90064 -11.75318 -11.71100 -11.65123 -11.30795 -11.18437 -10.98321 -10.96289 -10.67090 -10.61790 -9.99385 -9.92940 -9.59267 -9.15917 -9.12318 -8.73933 -8.62705 -8.24321 -8.18437 -6.32725 -3.84287 0.68139 1.21367 2.75366 3.00270 3.04605 3.12209 3.13194 3.49288 3.71775 3.85745 3.99870 4.08558 4.19674 4.49155 4.56930 4.65019 4.68497 4.74834 4.76232 4.81466 4.96165 5.03814 5.16235 5.18012 5.23343 5.28912 5.34327 5.35993 5.47043 5.49823 5.52974 5.58429 5.62783 5.72606 5.74492 5.76346 5.83975 5.86608 5.88951 6.01136 6.14404 6.22086 6.34648 6.46447 6.69992 6.99817 7.47994 7.54138 7.56378 8.12733 8.23258 8.57879 8.93354 9.40520 9.80733 10.80402 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009054 B = 0.002394 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3091.648371 B =11695.488370 C =13996.941075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.088 0.912 4 C 0.048 3.952 5 N -0.667 5.667 6 C 0.048 3.952 7 C 0.449 3.551 8 O -0.563 6.563 9 N -0.591 5.591 10 C -0.305 4.305 11 H 0.119 0.881 12 C 0.041 3.959 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.269 1.269 18 N -0.703 5.703 19 C 0.562 3.438 20 O -0.547 6.547 21 C -0.136 4.136 22 C -0.075 4.075 23 C -0.129 4.129 24 C -0.029 4.029 25 C -0.124 4.124 26 C -0.175 4.175 27 C -0.168 4.168 28 C -0.125 4.125 29 C -0.057 4.057 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.045 0.955 35 H 0.353 0.647 36 H 0.087 0.913 37 H 0.045 0.955 38 H 0.370 0.630 39 H 0.273 0.727 40 H 0.404 0.596 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.115 0.885 44 H 0.101 0.899 45 H 0.099 0.901 46 H 0.098 0.902 47 H 0.097 0.903 48 H 0.128 0.872 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.893 -1.297 15.763 25.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.106 0.894 4 C -0.082 4.082 5 N -0.300 5.300 6 C -0.085 4.085 7 C 0.234 3.766 8 O -0.444 6.444 9 N -0.230 5.230 10 C -0.434 4.434 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.521 5.521 14 Si 0.707 3.293 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.195 1.195 18 N -0.354 5.354 19 C 0.349 3.651 20 O -0.426 6.426 21 C -0.139 4.139 22 C -0.093 4.093 23 C -0.147 4.147 24 C -0.029 4.029 25 C -0.142 4.142 26 C -0.212 4.212 27 C -0.205 4.205 28 C -0.143 4.143 29 C -0.076 4.076 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.173 0.827 36 H 0.105 0.895 37 H 0.063 0.937 38 H 0.203 0.797 39 H 0.084 0.916 40 H 0.241 0.759 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.133 0.867 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.116 0.884 47 H 0.115 0.885 48 H 0.146 0.854 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -19.494 -0.777 16.707 25.686 hybrid contribution -0.382 -0.493 -2.109 2.199 sum -19.877 -1.270 14.598 24.694 Atomic orbital electron populations 1.22142 0.94894 1.02247 1.02698 1.20955 0.93646 0.97585 0.83829 0.89400 1.22325 0.89377 1.00740 0.95804 1.60047 1.03171 1.27132 1.39680 1.21712 0.95085 1.00009 0.91680 1.19703 0.87932 0.84189 0.84742 1.90582 1.70969 1.50385 1.32498 1.42204 1.07863 1.53040 1.19916 1.19429 0.79513 1.36029 1.08392 0.86299 1.25048 0.95450 0.97652 0.98058 1.69629 1.05080 1.43383 1.34010 0.86664 0.79571 0.79791 0.83301 1.19670 1.20165 1.19504 1.45734 1.66447 1.14414 1.08789 1.18228 0.77262 0.86357 0.83206 1.90743 1.51007 1.15552 1.85278 1.19946 1.05072 0.94409 0.94455 1.21314 0.96053 0.93429 0.98533 1.20987 1.00985 1.00523 0.92199 1.19334 0.96440 0.93657 0.93476 1.21099 1.04612 0.90703 0.97743 1.23119 0.97471 0.97842 1.02756 1.23043 0.95604 1.00991 1.00874 1.20905 1.00806 0.93908 0.98645 1.21234 0.95091 1.00278 0.90977 0.91796 0.92315 0.91558 0.90428 0.93742 0.82705 0.89487 0.93692 0.79721 0.91606 0.75936 0.85332 0.85339 0.86721 0.88043 0.88236 0.88394 0.88499 0.85438 0.84666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.48 37.16 0.35 -1.08 16 2 C 0.15 1.57 2.81 -67.93 -0.19 1.38 16 3 H 0.09 1.12 7.58 -51.93 -0.39 0.72 16 4 C 0.05 0.50 5.24 -3.82 -0.02 0.48 16 5 N -0.67 -9.65 5.85 -115.06 -0.67 -10.32 16 6 C 0.05 0.75 6.17 -4.98 -0.03 0.72 16 7 C 0.45 9.98 7.82 -10.99 -0.09 9.89 16 8 O -0.56 -15.01 15.78 5.55 0.09 -14.92 16 9 N -0.59 -13.87 5.09 -10.96 -0.06 -13.93 16 10 C -0.30 -8.59 10.16 -14.94 -0.15 -8.74 16 11 H 0.12 3.85 7.39 -52.48 -0.39 3.46 16 12 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 13 N -0.88 -25.69 13.96 55.50 0.77 -24.91 16 14 Si 0.88 19.18 27.74 -169.99 -4.71 14.46 16 15 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 16 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 17 H -0.27 -5.31 6.52 56.52 0.37 -4.95 16 18 N -0.70 -8.21 4.75 -54.75 -0.26 -8.47 16 19 C 0.56 7.78 7.74 -12.33 -0.10 7.68 16 20 O -0.55 -9.14 16.01 5.32 0.09 -9.05 16 21 C -0.14 -1.69 5.87 -104.97 -0.62 -2.31 16 22 C -0.07 -0.81 9.54 -39.19 -0.37 -1.18 16 23 C -0.13 -1.29 9.28 -39.64 -0.37 -1.66 16 24 C -0.03 -0.28 5.62 -104.53 -0.59 -0.87 16 25 C -0.12 -0.96 6.03 -91.77 -0.55 -1.51 16 26 C -0.18 -1.23 9.86 -26.69 -0.26 -1.49 16 27 C -0.17 -1.09 10.16 -26.69 -0.27 -1.37 16 28 C -0.12 -1.23 9.72 -39.64 -0.39 -1.62 16 29 C -0.06 -0.66 9.60 -39.19 -0.38 -1.04 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.35 5.68 8.43 -39.29 -0.33 5.35 16 36 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.37 7.59 5.76 -40.82 -0.24 7.35 16 39 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.40 4.24 6.64 -40.82 -0.27 3.97 16 41 H 0.13 1.19 6.41 -52.49 -0.34 0.85 16 42 H 0.13 1.07 6.00 -52.48 -0.32 0.75 16 43 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.10 0.72 6.16 -51.93 -0.32 0.40 16 45 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 49 H 0.14 1.55 7.65 -52.48 -0.40 1.15 16 LS Contribution 408.46 15.07 6.16 6.16 Total: -1.00 -34.70 408.46 -9.95 -44.65 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: -7.23 Total: 18.03 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -4.11 Total: -1.69 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: -0.21 Total: -57.63 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: 0.17 Total: -23.97 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.71 Total: 14.46 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.70 -9.95 -44.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275030274.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.170 kcal (2) G-P(sol) polarization free energy of solvation -34.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds