Wall clock time and date at job start Wed Apr 1 2020 03:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 N 1.46901 * 109.47113 * 184.99881 * 4 2 1 6 6 C 1.46900 * 111.00082 * 179.97438 * 5 4 2 7 7 C 1.50700 * 109.47346 * 180.02562 * 6 5 4 8 8 O 1.21290 * 119.99726 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00009 * 180.02562 * 7 6 5 10 10 C 1.37091 * 119.99791 * 179.97438 * 9 7 6 11 11 H 1.08005 * 120.00383 * 0.02562 * 10 9 7 12 12 C 1.38949 * 120.00018 * 180.02562 * 10 9 7 13 13 N 1.31419 * 120.00002 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 119.99784 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47214 * 90.00343 * 14 12 10 16 16 H 1.48506 * 109.47107 * 209.99931 * 14 12 10 17 17 H 1.48495 * 109.47091 * 329.99850 * 14 12 10 18 18 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 19 19 C 1.34768 * 120.00056 * 275.00296 * 18 2 1 20 20 O 1.21554 * 120.00177 * 359.97438 * 19 18 2 21 21 C 1.47851 * 120.00017 * 179.97438 * 19 18 2 22 22 C 1.39573 * 120.14129 * 359.72471 * 21 19 18 23 23 C 1.37960 * 119.84915 * 179.74672 * 22 21 19 24 24 C 1.38359 * 120.14769 * 0.52756 * 23 22 21 25 25 C 1.50695 * 119.85945 * 179.76418 * 24 23 22 26 26 C 1.53001 * 117.49757 * 8.73131 * 25 24 23 27 27 C 1.53000 * 117.49908 * 300.07011 * 25 24 23 28 28 C 1.38361 * 120.28931 * 359.74407 * 24 23 22 29 29 C 1.37954 * 120.14653 * 359.97438 * 28 24 23 30 30 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 33 33 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 34 34 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 35 35 H 1.00898 * 111.00040 * 303.95150 * 5 4 2 36 36 H 1.08995 * 109.47422 * 300.00193 * 6 5 4 37 37 H 1.08997 * 109.46587 * 60.00139 * 6 5 4 38 38 H 0.96994 * 119.99949 * 0.02562 * 9 7 6 39 39 H 0.97004 * 119.99408 * 179.97438 * 13 12 10 40 40 H 0.97001 * 119.99547 * 95.00125 * 18 2 1 41 41 H 1.07992 * 120.07609 * 0.02562 * 22 21 19 42 42 H 1.08003 * 119.92911 * 180.27626 * 23 22 21 43 43 H 1.09005 * 115.55435 * 154.39435 * 25 24 23 44 44 H 1.09001 * 117.49527 * 359.97438 * 26 25 24 45 45 H 1.09000 * 117.50681 * 145.01849 * 26 25 24 46 46 H 1.08994 * 117.49709 * 214.97406 * 27 25 24 47 47 H 1.08995 * 117.49711 * 359.97339 * 27 25 24 48 48 H 1.08007 * 119.92768 * 179.97438 * 28 24 23 49 49 H 1.08006 * 120.07612 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5040 -0.8266 -1.1905 6 6 4.0303 -1.5157 -2.3763 7 6 5.5316 -1.6053 -2.2804 8 8 6.1066 -1.1403 -1.3190 9 7 6.2353 -2.2011 -3.2633 10 6 7.6011 -2.2821 -3.1762 11 1 8.1131 -1.8688 -2.3198 12 6 8.3267 -2.8959 -4.1898 13 7 9.6359 -2.9739 -4.1061 14 14 7.4412 -3.6100 -5.6715 15 1 7.3222 -2.5707 -6.7254 16 1 8.2118 -4.7645 -6.1996 17 1 6.0860 -4.0628 -5.2674 18 7 2.0184 -0.6906 1.1961 19 6 2.1471 -0.0184 2.3570 20 8 1.8584 1.1611 2.4116 21 6 2.6395 -0.7155 3.5643 22 6 2.9664 -2.0712 3.5065 23 6 3.4303 -2.7144 4.6353 24 6 3.5613 -2.0214 5.8256 25 6 4.0636 -2.7317 7.0561 26 6 4.6027 -4.1528 6.8807 27 6 3.2518 -3.9252 7.5637 28 6 3.2336 -0.6787 5.8911 29 6 2.7741 -0.0222 4.7682 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.6055 -1.7197 -1.2953 34 1 1.7516 -0.1582 -2.1371 35 1 3.9280 0.0826 -1.0825 36 1 3.6095 -2.5197 -2.4297 37 1 3.7557 -0.9585 -3.2720 38 1 5.7756 -2.5719 -4.0327 39 1 10.1423 -3.4028 -4.8136 40 1 2.2491 -1.6318 1.1525 41 1 2.8608 -2.6142 2.5790 42 1 3.6879 -3.7623 4.5909 43 1 4.5466 -2.0985 7.8003 44 1 4.5937 -4.5740 5.8754 45 1 5.4401 -4.4548 7.5098 46 1 3.2011 -4.0773 8.6417 47 1 2.3542 -4.1962 7.0079 48 1 3.3377 -0.1435 6.8234 49 1 2.5182 1.0258 4.8207 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275030274.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:05 Heat of formation + Delta-G solvation = -43.720610 kcal Electronic energy + Delta-G solvation = -28995.083239 eV Core-core repulsion = 24921.652070 eV Total energy + Delta-G solvation = -4073.431169 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.36024 -40.33143 -39.99792 -37.92599 -37.33634 -36.07233 -35.19300 -33.74032 -32.88392 -31.78255 -31.04366 -29.08563 -26.66615 -25.83281 -24.46214 -23.89904 -23.04914 -22.73695 -21.74470 -21.25482 -20.94318 -20.26610 -19.05724 -17.93365 -17.66938 -17.23154 -16.76007 -16.46917 -16.16957 -16.07680 -15.90756 -15.65246 -15.42842 -15.30664 -14.94450 -14.79266 -14.67393 -14.31876 -14.28499 -14.07734 -13.84032 -13.66204 -13.32836 -13.12893 -13.01103 -12.80946 -12.71018 -12.51040 -12.40980 -12.29902 -12.04481 -11.97481 -11.82613 -11.61389 -11.50895 -11.25094 -11.00174 -10.44369 -10.24658 -10.10069 -9.98550 -9.53272 -9.35003 -8.40993 -6.02140 -0.18885 0.38686 1.30471 1.36361 1.45388 1.81320 1.97262 2.20162 2.23640 2.71658 2.73885 3.14562 3.15669 3.38518 3.53356 3.74588 3.83292 3.85762 3.95218 4.01681 4.12555 4.13687 4.22708 4.29414 4.36677 4.40288 4.48412 4.54415 4.57818 4.65678 4.75872 4.77356 4.78876 4.83070 4.95906 5.02845 5.07105 5.14209 5.26052 5.27437 5.32559 5.39026 5.52424 5.54751 5.57724 5.89256 5.89789 6.03379 6.28691 6.57349 6.60231 6.88924 7.23010 7.40566 7.98118 8.76839 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009054 B = 0.002394 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3091.648371 B =11695.488370 C =13996.941075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.142 3.858 3 H 0.062 0.938 4 C 0.055 3.945 5 N -0.685 5.685 6 C 0.063 3.937 7 C 0.447 3.553 8 O -0.616 6.616 9 N -0.591 5.591 10 C -0.328 4.328 11 H 0.052 0.948 12 C -0.017 4.017 13 N -0.936 5.936 14 Si 0.967 3.033 15 H -0.258 1.258 16 H -0.276 1.276 17 H -0.228 1.228 18 N -0.694 5.694 19 C 0.555 3.445 20 O -0.587 6.587 21 C -0.160 4.160 22 C -0.078 4.078 23 C -0.136 4.136 24 C -0.029 4.029 25 C -0.137 4.137 26 C -0.178 4.178 27 C -0.157 4.157 28 C -0.127 4.127 29 C -0.072 4.072 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.067 0.933 35 H 0.339 0.661 36 H 0.121 0.879 37 H 0.079 0.921 38 H 0.390 0.610 39 H 0.279 0.721 40 H 0.411 0.589 41 H 0.142 0.858 42 H 0.146 0.854 43 H 0.125 0.875 44 H 0.099 0.901 45 H 0.109 0.891 46 H 0.113 0.887 47 H 0.096 0.904 48 H 0.149 0.851 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.880 -3.577 14.304 27.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.037 3.963 3 H 0.080 0.920 4 C -0.073 4.073 5 N -0.317 5.317 6 C -0.069 4.069 7 C 0.235 3.765 8 O -0.500 6.500 9 N -0.233 5.233 10 C -0.458 4.458 11 H 0.070 0.930 12 C -0.216 4.216 13 N -0.577 5.577 14 Si 0.787 3.213 15 H -0.183 1.183 16 H -0.201 1.201 17 H -0.151 1.151 18 N -0.345 5.345 19 C 0.344 3.656 20 O -0.469 6.469 21 C -0.162 4.162 22 C -0.097 4.097 23 C -0.154 4.154 24 C -0.029 4.029 25 C -0.155 4.155 26 C -0.214 4.214 27 C -0.194 4.194 28 C -0.145 4.145 29 C -0.091 4.091 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.120 0.880 34 H 0.085 0.915 35 H 0.157 0.843 36 H 0.139 0.861 37 H 0.097 0.903 38 H 0.226 0.774 39 H 0.088 0.912 40 H 0.248 0.752 41 H 0.160 0.840 42 H 0.164 0.836 43 H 0.142 0.858 44 H 0.117 0.883 45 H 0.127 0.873 46 H 0.132 0.868 47 H 0.114 0.886 48 H 0.167 0.833 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -22.527 -3.084 15.236 27.370 hybrid contribution 0.614 0.264 -1.496 1.638 sum -21.913 -2.820 13.740 26.018 Atomic orbital electron populations 1.22057 0.92990 1.03347 1.02633 1.21051 0.95033 0.96356 0.83817 0.91952 1.22389 0.86595 1.02379 0.95978 1.60052 1.05550 1.26445 1.39648 1.21646 0.89221 1.02597 0.93409 1.21087 0.90924 0.81492 0.83032 1.90565 1.73018 1.51913 1.34543 1.42022 1.06054 1.53949 1.21252 1.18987 0.82014 1.37473 1.07298 0.92961 1.26161 0.96209 0.97319 1.01892 1.69820 1.07581 1.44498 1.35783 0.85337 0.79805 0.78755 0.77432 1.18272 1.20133 1.15070 1.45744 1.65578 1.14618 1.08535 1.18537 0.76867 0.86029 0.84156 1.90707 1.53046 1.17176 1.85973 1.20001 1.06688 0.95302 0.94259 1.21480 0.95823 0.92826 0.99522 1.21258 1.00641 1.01424 0.92040 1.19636 0.95350 0.93636 0.94267 1.21176 1.05770 0.91238 0.97312 1.23205 0.98252 0.96974 1.03003 1.23112 0.95228 0.99291 1.01769 1.21144 1.00155 0.94299 0.98859 1.21328 0.95911 1.00205 0.91646 0.93842 0.90551 0.89662 0.87953 0.91494 0.84279 0.86117 0.90348 0.77399 0.91176 0.75151 0.84049 0.83646 0.85753 0.88279 0.87270 0.86847 0.88589 0.83348 0.85453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.48 71.98 0.68 -1.73 16 2 C 0.14 2.92 2.81 44.99 0.13 3.05 16 3 H 0.06 1.62 7.58 -2.39 -0.02 1.60 16 4 C 0.06 0.97 5.24 86.31 0.45 1.42 16 5 N -0.68 -18.41 5.85 -517.93 -3.03 -21.43 16 6 C 0.06 1.75 6.17 85.56 0.53 2.28 16 7 C 0.45 19.59 7.82 87.66 0.69 20.28 16 8 O -0.62 -34.04 15.78 -3.06 -0.05 -34.09 16 9 N -0.59 -27.24 5.09 -306.99 -1.56 -28.80 16 10 C -0.33 -19.16 10.16 84.04 0.85 -18.31 16 11 H 0.05 3.67 7.39 -2.91 -0.02 3.64 16 12 C -0.02 -0.96 5.50 84.93 0.47 -0.50 16 13 N -0.94 -56.48 13.96 21.66 0.30 -56.18 16 14 Si 0.97 38.10 27.74 68.60 1.90 40.00 16 15 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 16 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 17 H -0.23 -7.37 6.52 99.48 0.65 -6.72 16 18 N -0.69 -16.07 4.75 -445.41 -2.12 -18.18 16 19 C 0.56 16.08 7.74 86.79 0.67 16.75 16 20 O -0.59 -20.88 16.01 -3.89 -0.06 -20.94 16 21 C -0.16 -4.14 5.87 -20.09 -0.12 -4.25 16 22 C -0.08 -1.68 9.54 22.53 0.21 -1.47 16 23 C -0.14 -2.63 9.28 22.23 0.21 -2.42 16 24 C -0.03 -0.53 5.62 -19.81 -0.11 -0.65 16 25 C -0.14 -1.93 6.03 -11.54 -0.07 -2.00 16 26 C -0.18 -2.19 9.86 30.62 0.30 -1.89 16 27 C -0.16 -1.73 10.16 30.62 0.31 -1.42 16 28 C -0.13 -2.51 9.72 22.23 0.22 -2.30 16 29 C -0.07 -1.77 9.60 22.53 0.22 -1.55 16 30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.34 10.80 8.43 -89.70 -0.76 10.05 16 36 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.39 14.64 5.76 -92.71 -0.53 14.11 16 39 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 40 H 0.41 8.22 6.64 -92.71 -0.62 7.60 16 41 H 0.14 2.53 6.41 -2.91 -0.02 2.51 16 42 H 0.15 2.23 6.00 -2.91 -0.02 2.22 16 43 H 0.12 1.49 8.14 -2.38 -0.02 1.47 16 44 H 0.10 1.26 6.16 -2.39 -0.01 1.24 16 45 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 49 H 0.13 3.21 7.65 -2.91 -0.02 3.19 16 Total: -1.00 -83.40 408.46 0.06 -83.34 By element: Atomic # 1 Polarization: 51.94 SS G_CDS: -0.96 Total: 50.98 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 5.64 Total: 5.31 kcal Atomic # 7 Polarization: -118.19 SS G_CDS: -6.41 Total: -124.60 kcal Atomic # 8 Polarization: -54.92 SS G_CDS: -0.11 Total: -55.03 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 1.90 Total: 40.00 kcal Total: -83.40 0.06 -83.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275030274.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.621 kcal (2) G-P(sol) polarization free energy of solvation -83.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds