Wall clock time and date at job start Wed Apr 1 2020 02:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47228 * 2 1 4 4 N 1.46496 * 109.47280 * 119.99986 * 2 1 3 5 5 C 1.36940 * 119.99888 * 275.00183 * 4 2 1 6 6 H 1.07994 * 120.00147 * 359.97438 * 5 4 2 7 7 C 1.38813 * 119.99822 * 179.97438 * 5 4 2 8 8 N 1.31619 * 119.99950 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00235 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47155 * 90.00175 * 9 7 5 11 11 H 1.48498 * 109.47499 * 210.00153 * 9 7 5 12 12 H 1.48504 * 109.46919 * 330.00113 * 9 7 5 13 13 C 1.53003 * 109.46975 * 240.00151 * 2 1 3 14 14 H 1.08996 * 110.91108 * 299.19106 * 13 2 1 15 15 C 1.55453 * 111.11550 * 175.20233 * 13 2 1 16 16 C 1.54321 * 102.96661 * 206.46339 * 15 13 2 17 17 N 1.47016 * 107.27228 * 22.19089 * 16 15 13 18 18 C 1.34776 * 125.64699 * 181.04029 * 17 16 15 19 19 O 1.21552 * 120.00129 * 180.02562 * 18 17 16 20 20 C 1.47933 * 120.00218 * 0.02562 * 18 17 16 21 21 C 1.39468 * 119.71186 * 180.02562 * 20 18 17 22 22 C 1.38414 * 119.06218 * 180.02562 * 21 20 18 23 23 C 1.38694 * 118.72063 * 359.83988 * 22 21 20 24 24 C 1.39548 * 119.04675 * 0.21628 * 23 22 21 25 25 N 1.31307 * 120.84171 * 359.59109 * 24 23 22 26 26 O 1.35521 * 121.72590 * 180.30076 * 23 22 21 27 27 C 1.42881 * 117.73110 * 342.55015 * 26 23 22 28 28 C 1.53407 * 108.50474 * 49.37260 * 27 26 23 29 29 C 1.50491 * 119.62978 * 179.59909 * 22 21 20 30 30 C 1.47427 * 108.70549 * 1.06079 * 17 16 15 31 31 H 1.08999 * 109.46969 * 54.77778 * 1 2 3 32 32 H 1.08996 * 109.47222 * 174.77622 * 1 2 3 33 33 H 1.09000 * 109.47123 * 294.78137 * 1 2 3 34 34 H 0.96998 * 119.99833 * 94.99406 * 4 2 1 35 35 H 0.96997 * 120.00304 * 180.02562 * 8 7 5 36 36 H 1.08999 * 110.70610 * 88.08925 * 15 13 2 37 37 H 1.08999 * 110.85542 * 324.90685 * 15 13 2 38 38 H 1.09001 * 109.87746 * 262.77589 * 16 15 13 39 39 H 1.08996 * 109.87928 * 141.61341 * 16 15 13 40 40 H 1.07998 * 120.46979 * 0.03496 * 21 20 18 41 41 H 1.07997 * 119.58063 * 179.85505 * 24 23 22 42 42 H 1.09003 * 109.63249 * 169.07477 * 27 26 23 43 43 H 1.08998 * 109.63851 * 289.66880 * 27 26 23 44 44 H 1.09001 * 109.68520 * 55.03956 * 28 27 26 45 45 H 1.09000 * 109.68594 * 175.56951 * 28 27 26 46 46 H 1.09000 * 109.45470 * 282.69345 * 29 22 21 47 47 H 1.08998 * 109.45597 * 42.62955 * 29 22 21 48 48 H 1.08997 * 110.36522 * 94.70986 * 30 17 16 49 49 H 1.08999 * 110.36588 * 216.92171 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0074 2.3757 6 1 1.8927 1.0405 2.4241 7 6 2.6114 -0.6619 3.5092 8 7 2.7366 -0.0055 4.6431 9 14 3.0544 -2.4747 3.4258 10 1 4.4870 -2.6179 3.0620 11 1 2.8144 -3.1044 4.7490 12 1 2.2139 -3.1428 2.3998 13 6 2.0400 -0.7212 -1.2493 14 1 1.7015 -1.7572 -1.2659 15 6 3.5891 -0.6394 -1.3501 16 6 3.8443 -0.7598 -2.8673 17 7 2.6058 -0.3602 -3.5513 18 6 2.4142 -0.3477 -4.8853 19 8 1.3440 0.0035 -5.3423 20 6 3.5063 -0.7612 -5.7933 21 6 3.3017 -0.7453 -7.1728 22 6 4.3326 -1.1354 -8.0100 23 6 5.5377 -1.5263 -7.4458 24 6 5.6697 -1.5181 -6.0566 25 7 4.6747 -1.1392 -5.2881 26 8 6.5891 -1.9139 -8.2081 27 6 6.3284 -2.2762 -9.5654 28 6 5.4795 -1.1726 -10.2094 29 6 4.1227 -1.1318 -9.5002 30 6 1.6082 0.0248 -2.5363 31 1 -0.3633 0.5927 -0.8395 32 1 -0.3633 -1.0233 -0.0936 33 1 -0.3633 0.4308 0.9330 34 1 2.2490 -1.6317 1.1526 35 1 3.0599 -0.4627 5.4351 36 1 4.0544 -1.4664 -0.8138 37 1 3.9526 0.3164 -0.9725 38 1 4.0918 -1.7906 -3.1208 39 1 4.6594 -0.0980 -3.1597 40 1 2.3523 -0.4329 -7.5821 41 1 6.6036 -1.8231 -5.6079 42 1 7.2701 -2.3758 -10.1052 43 1 5.7846 -3.2204 -9.5946 44 1 5.9811 -0.2113 -10.0980 45 1 5.3350 -1.3908 -11.2675 46 1 3.5371 -2.0055 -9.7865 47 1 3.5888 -0.2267 -9.7895 48 1 1.6280 1.1026 -2.3748 49 1 0.6121 -0.2938 -2.8434 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279038649.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:55 Heat of formation + Delta-G solvation = -19.956027 kcal Electronic energy + Delta-G solvation = -29978.443380 eV Core-core repulsion = 25906.042720 eV Total energy + Delta-G solvation = -4072.400660 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.62182 -40.12532 -38.67978 -37.64702 -35.40452 -35.11035 -32.59692 -32.07044 -31.28084 -30.44226 -29.58919 -27.69378 -26.63272 -25.58289 -24.28321 -23.65398 -22.88314 -21.38842 -21.21387 -19.79474 -19.51874 -18.33998 -18.05913 -17.52152 -17.02695 -16.16774 -16.06776 -15.94167 -15.21094 -15.05194 -14.90075 -14.59522 -14.34363 -14.00235 -13.91322 -13.66687 -13.57551 -13.37360 -13.13415 -12.76394 -12.59243 -12.51842 -12.41788 -12.13156 -12.12666 -11.81319 -11.55001 -11.47012 -11.29510 -10.95195 -10.75628 -10.54262 -10.48497 -10.28824 -10.18938 -9.93086 -9.87800 -9.70927 -9.55535 -8.90792 -8.89904 -8.51484 -7.24399 -5.74188 -3.09299 0.37257 0.73924 2.49679 2.66103 2.92113 3.39362 3.42185 3.47401 3.54627 3.87933 3.93977 3.96936 4.09282 4.22253 4.47604 4.60392 4.61557 4.65359 4.80385 4.85208 4.87871 4.90863 5.06919 5.11307 5.21786 5.32479 5.41061 5.45341 5.48299 5.51883 5.58641 5.63160 5.70847 5.77978 5.85289 5.95402 6.02278 6.07126 6.21535 6.26186 6.35400 6.42244 6.49656 6.58916 6.71000 6.83450 7.05999 7.38255 7.52865 8.02381 8.08901 8.44888 9.23640 9.96203 10.16342 11.44233 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021115 B = 0.002175 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.725542 B =12872.568849 C =13866.811387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.190 3.810 3 H 0.058 0.942 4 N -0.746 5.746 5 C -0.238 4.238 6 H 0.090 0.910 7 C 0.003 3.997 8 N -0.935 5.935 9 Si 0.883 3.117 10 H -0.284 1.284 11 H -0.293 1.293 12 H -0.277 1.277 13 C -0.106 4.106 14 H 0.079 0.921 15 C -0.125 4.125 16 C 0.116 3.884 17 N -0.596 5.596 18 C 0.584 3.416 19 O -0.544 6.544 20 C 0.048 3.952 21 C -0.072 4.072 22 C -0.131 4.131 23 C 0.103 3.897 24 C 0.079 3.921 25 N -0.417 5.417 26 O -0.305 6.305 27 C 0.057 3.943 28 C -0.161 4.161 29 C -0.081 4.081 30 C 0.114 3.886 31 H 0.041 0.959 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.360 0.640 35 H 0.259 0.741 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.151 0.849 41 H 0.172 0.828 42 H 0.113 0.887 43 H 0.068 0.932 44 H 0.080 0.920 45 H 0.090 0.910 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.073 0.927 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.897 -4.523 -32.958 33.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.081 3.919 3 H 0.076 0.924 4 N -0.389 5.389 5 C -0.368 4.368 6 H 0.108 0.892 7 C -0.192 4.192 8 N -0.583 5.583 9 Si 0.714 3.286 10 H -0.211 1.211 11 H -0.219 1.219 12 H -0.204 1.204 13 C -0.126 4.126 14 H 0.098 0.902 15 C -0.163 4.163 16 C -0.007 4.007 17 N -0.327 5.327 18 C 0.372 3.628 19 O -0.422 6.422 20 C -0.089 4.089 21 C -0.093 4.093 22 C -0.140 4.140 23 C 0.054 3.946 24 C -0.084 4.084 25 N -0.129 5.129 26 O -0.216 6.216 27 C -0.018 4.018 28 C -0.199 4.199 29 C -0.118 4.118 30 C -0.008 4.008 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.193 0.807 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.168 0.832 41 H 0.189 0.811 42 H 0.131 0.869 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.109 0.891 46 H 0.104 0.896 47 H 0.109 0.891 48 H 0.092 0.908 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.600 -4.147 -32.130 33.062 hybrid contribution 0.129 -1.384 -0.938 1.677 sum 6.728 -5.532 -33.068 34.196 Atomic orbital electron populations 1.22466 0.98795 1.00618 1.00977 1.20099 0.91912 0.95473 0.84442 0.92352 1.42733 1.79835 1.09314 1.06988 1.19053 1.36640 0.95486 0.85651 0.89216 1.24661 1.01612 0.97395 0.95579 1.69698 1.52799 1.35545 1.00251 0.86567 0.78422 0.86901 0.76741 1.21095 1.21920 1.20350 1.22758 0.95518 1.00170 0.94191 0.90213 1.22766 0.95943 1.03947 0.93605 1.22203 0.85884 1.00926 0.91667 1.48349 1.16049 1.63821 1.04499 1.17339 0.86212 0.78438 0.80819 1.90784 1.26017 1.49647 1.75754 1.20963 0.92738 1.03125 0.92066 1.21848 0.99514 0.95598 0.92341 1.20088 0.93766 1.02887 0.97228 1.20048 0.87290 0.94994 0.92275 1.22510 0.98843 1.00134 0.86871 1.67862 0.99246 1.07377 1.38421 1.85982 1.31189 1.80479 1.23994 1.23104 1.01878 0.97213 0.79566 1.22272 0.96144 1.00439 1.00998 1.20498 0.97988 1.04181 0.89106 1.22341 0.92274 0.99659 0.86560 0.94030 0.93708 0.92107 0.80714 0.93136 0.90015 0.90031 0.90845 0.90824 0.83178 0.81139 0.86913 0.91328 0.90098 0.89133 0.89557 0.89072 0.90849 0.90320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 9.22 37.16 0.34 -2.58 16 2 C 0.19 3.50 2.41 -67.93 -0.16 3.34 16 3 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 4 N -0.75 -16.94 4.71 -53.42 -0.25 -17.20 16 5 C -0.24 -6.55 10.41 -15.06 -0.16 -6.71 16 6 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 7 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 8 N -0.93 -29.16 13.97 55.49 0.78 -28.39 16 9 Si 0.88 21.90 27.73 -169.99 -4.71 17.18 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 12 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 13 C -0.11 -1.63 2.65 -88.31 -0.23 -1.86 16 14 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 15 C -0.12 -1.80 6.23 -24.74 -0.15 -1.95 16 16 C 0.12 1.51 5.39 -3.07 -0.02 1.50 16 17 N -0.60 -8.59 3.33 -171.61 -0.57 -9.16 16 18 C 0.58 8.76 7.83 -12.29 -0.10 8.67 16 19 O -0.54 -9.37 16.58 5.32 0.09 -9.28 16 20 C 0.05 0.61 6.72 -83.02 -0.56 0.05 16 21 C -0.07 -0.75 9.30 -39.06 -0.36 -1.12 16 22 C -0.13 -1.11 5.75 -104.49 -0.60 -1.71 16 23 C 0.10 0.91 6.50 -38.92 -0.25 0.66 16 24 C 0.08 0.76 11.12 -17.29 -0.19 0.57 16 25 N -0.42 -4.88 6.83 -9.61 -0.07 -4.94 16 26 O -0.30 -2.34 10.29 -18.26 -0.19 -2.53 16 27 C 0.06 0.25 7.01 37.37 0.26 0.51 16 28 C -0.16 -0.60 6.20 -26.44 -0.16 -0.76 16 29 C -0.08 -0.42 5.90 -27.91 -0.16 -0.58 16 30 C 0.11 1.65 5.47 -2.53 -0.01 1.63 16 31 H 0.04 0.61 7.58 -51.93 -0.39 0.22 16 32 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.36 8.10 5.66 -40.82 -0.23 7.87 16 35 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 36 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.08 1.24 8.05 -51.93 -0.42 0.82 16 38 H 0.07 0.94 7.42 -51.93 -0.39 0.55 16 39 H 0.07 0.93 7.53 -51.93 -0.39 0.54 16 40 H 0.15 1.47 7.64 -52.49 -0.40 1.06 16 41 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 46 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.07 1.05 8.04 -51.93 -0.42 0.63 16 49 H 0.08 1.15 8.03 -51.93 -0.42 0.74 16 LS Contribution 391.65 15.07 5.90 5.90 Total: -1.00 -33.63 391.65 -9.36 -42.99 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -7.72 Total: 5.77 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -2.62 Total: -0.36 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: -0.11 Total: -59.68 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -0.10 Total: -11.80 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.18 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.63 -9.36 -42.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279038649.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.032 kcal (2) G-P(sol) polarization free energy of solvation -33.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds