Wall clock time and date at job start Wed Apr 1 2020 03:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46745 * 2 1 4 4 C 1.52998 * 109.47247 * 239.99965 * 2 1 3 5 5 N 1.46495 * 109.47256 * 65.00259 * 4 2 1 6 6 C 1.34779 * 120.00169 * 180.02562 * 5 4 2 7 7 O 1.21350 * 119.99629 * 359.97438 * 6 5 4 8 8 C 1.49443 * 120.00174 * 180.02562 * 6 5 4 9 9 O 1.21351 * 119.99840 * 353.06017 * 8 6 5 10 10 N 1.34778 * 120.00412 * 173.06920 * 8 6 5 11 11 C 1.46928 * 120.62619 * 1.66671 * 10 8 6 12 12 C 1.52760 * 109.00918 * 233.58967 * 11 10 8 13 13 C 1.53040 * 109.38159 * 305.58721 * 12 11 10 14 14 C 1.50698 * 109.45020 * 181.25315 * 13 12 11 15 15 H 1.08000 * 120.00314 * 239.93810 * 14 13 12 16 16 C 1.37884 * 119.99851 * 59.94170 * 14 13 12 17 17 N 1.31519 * 120.00024 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99921 * 180.02562 * 16 14 13 19 19 H 1.48488 * 109.47084 * 59.99740 * 18 16 14 20 20 H 1.48497 * 109.46859 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46761 * 299.99716 * 18 16 14 22 22 C 1.53035 * 109.53751 * 61.24020 * 13 12 11 23 23 C 1.46916 * 120.63686 * 181.95166 * 10 8 6 24 24 C 1.50698 * 109.47059 * 119.99706 * 2 1 3 25 25 C 1.38653 * 120.79270 * 240.00306 * 24 2 1 26 26 C 1.38193 * 119.16571 * 179.74500 * 25 24 2 27 27 N 1.31871 * 120.76650 * 0.25600 * 26 25 24 28 28 C 1.31880 * 121.72355 * 359.97438 * 27 26 25 29 29 C 1.38203 * 120.75917 * 359.97438 * 28 27 26 30 30 H 1.09002 * 109.46964 * 59.99995 * 1 2 3 31 31 H 1.09001 * 109.47200 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47689 * 300.00312 * 1 2 3 33 33 H 1.09004 * 109.46607 * 185.00047 * 4 2 1 34 34 H 1.08997 * 109.46816 * 305.00131 * 4 2 1 35 35 H 0.97002 * 120.00322 * 359.97438 * 5 4 2 36 36 H 1.09000 * 109.58743 * 353.42111 * 11 10 8 37 37 H 1.09000 * 109.58823 * 113.84862 * 11 10 8 38 38 H 1.09006 * 109.56262 * 185.55352 * 12 11 10 39 39 H 1.08995 * 109.38841 * 65.51605 * 12 11 10 40 40 H 1.09003 * 109.46200 * 301.21798 * 13 12 11 41 41 H 0.96996 * 119.99911 * 180.02562 * 17 16 14 42 42 H 1.09002 * 109.49752 * 178.68297 * 22 13 12 43 43 H 1.09003 * 109.52654 * 58.60433 * 22 13 12 44 44 H 1.09002 * 109.58866 * 246.15366 * 23 10 8 45 45 H 1.09008 * 109.58445 * 6.43314 * 23 10 8 46 46 H 1.08008 * 120.41412 * 0.02562 * 25 24 2 47 47 H 1.08007 * 119.62161 * 180.22600 * 26 25 24 48 48 H 1.07992 * 119.61810 * 180.02562 * 28 27 26 49 49 H 1.08002 * 120.41592 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6525 0.0353 -2.4423 6 6 1.9957 -0.4136 -3.6659 7 8 2.6260 -1.4444 -3.7792 8 6 1.6009 0.3585 -4.8830 9 8 0.8662 1.3189 -4.7805 10 7 2.0606 -0.0119 -6.0946 11 6 2.9212 -1.1940 -6.2394 12 6 4.1955 -0.7940 -6.9807 13 6 3.8234 -0.1211 -8.3040 14 6 5.0796 0.2465 -9.0507 15 1 5.2770 1.2785 -9.3004 16 6 5.9770 -0.7348 -9.4153 17 7 5.7369 -1.9915 -9.1109 18 14 7.5346 -0.2791 -10.3404 19 1 8.3419 0.6581 -9.5189 20 1 8.3252 -1.5061 -10.6132 21 1 7.1744 0.3729 -11.6250 22 6 3.0084 1.1435 -8.0237 23 6 1.7160 0.7622 -7.2948 24 6 2.0323 -0.7103 1.2305 25 6 2.8303 -0.0523 2.1539 26 6 3.2679 -0.7346 3.2732 27 7 2.9390 -1.9971 3.4650 28 6 2.1857 -2.6558 2.6059 29 6 1.7104 -2.0385 1.4644 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 3.1263 -0.7994 -1.2054 34 1 1.6053 -1.7197 -1.2951 35 1 1.1483 0.8591 -2.3518 36 1 3.1797 -1.5807 -5.2537 37 1 2.3959 -1.9608 -6.8088 38 1 4.7957 -1.6818 -7.1802 39 1 4.7678 -0.0982 -6.3672 40 1 3.2306 -0.8089 -8.9070 41 1 6.3684 -2.6818 -9.3670 42 1 2.7636 1.6348 -8.9654 43 1 3.5911 1.8217 -7.4002 44 1 1.0904 0.1582 -7.9521 45 1 1.1773 1.6646 -7.0054 46 1 3.1027 0.9818 2.0026 47 1 3.8868 -0.2281 3.9991 48 1 1.9367 -3.6891 2.7971 49 1 1.0936 -2.5830 0.7648 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330001708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:34 Heat of formation + Delta-G solvation = -28.322183 kcal Electronic energy + Delta-G solvation = -29784.211385 eV Core-core repulsion = 25711.447942 eV Total energy + Delta-G solvation = -4072.763444 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.91078 -40.53076 -38.65667 -37.16415 -36.80073 -34.12764 -33.35173 -31.62329 -31.23069 -30.80820 -30.07664 -27.58530 -26.41499 -24.87843 -24.03057 -23.56719 -22.43382 -21.97698 -20.99700 -20.31572 -18.94562 -17.51476 -17.26712 -16.71681 -16.57640 -16.30976 -16.00524 -15.86985 -15.55933 -14.95084 -14.87045 -14.54351 -14.24937 -14.07792 -13.91575 -13.79260 -13.68950 -13.19462 -13.05204 -12.91305 -12.74217 -12.35860 -12.31068 -12.09097 -11.83623 -11.74789 -11.41717 -11.36649 -10.94030 -10.84750 -10.61865 -10.37005 -10.08273 -9.98614 -9.85375 -9.71353 -9.53966 -9.41599 -9.24990 -9.18276 -8.52999 -8.32469 -8.10446 -6.00633 -4.07295 0.75441 0.82120 1.57315 2.43876 3.30565 3.35591 3.37446 3.38466 3.42131 3.67966 4.08608 4.10882 4.14344 4.42006 4.43894 4.52298 4.60346 4.69528 4.76390 4.82546 5.21086 5.23823 5.24851 5.28889 5.37098 5.40907 5.51941 5.58491 5.63014 5.71760 5.80096 5.86577 5.95523 6.02752 6.08823 6.23745 6.30747 6.45453 6.60463 6.70914 6.79298 6.95613 7.06357 7.15624 7.29766 7.60208 7.65891 7.77630 7.87419 7.95476 8.07385 8.22151 8.41940 8.95689 9.57441 11.04757 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015382 B = 0.002125 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.889401 B =13174.658537 C =14299.600986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.066 4.066 3 H 0.093 0.907 4 C 0.125 3.875 5 N -0.704 5.704 6 C 0.512 3.488 7 O -0.500 6.500 8 C 0.499 3.501 9 O -0.547 6.547 10 N -0.558 5.558 11 C 0.044 3.956 12 C -0.121 4.121 13 C 0.046 3.954 14 C -0.514 4.514 15 H 0.054 0.946 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.278 1.278 22 C -0.122 4.122 23 C 0.106 3.894 24 C -0.030 4.030 25 C -0.167 4.167 26 C 0.100 3.900 27 N -0.489 5.489 28 C 0.101 3.899 29 C -0.165 4.165 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.412 0.588 36 H 0.142 0.858 37 H 0.060 0.940 38 H 0.105 0.895 39 H 0.035 0.965 40 H 0.027 0.973 41 H 0.261 0.739 42 H 0.063 0.937 43 H 0.052 0.948 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.136 0.864 47 H 0.156 0.844 48 H 0.156 0.844 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.616 2.170 22.018 24.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 H 0.111 0.889 4 C 0.002 3.998 5 N -0.358 5.358 6 C 0.294 3.706 7 O -0.376 6.376 8 C 0.281 3.719 9 O -0.427 6.427 10 N -0.288 5.288 11 C -0.076 4.076 12 C -0.159 4.159 13 C 0.027 3.973 14 C -0.552 4.552 15 H 0.072 0.928 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.719 3.281 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.160 4.160 23 C -0.016 4.016 24 C -0.039 4.039 25 C -0.187 4.187 26 C -0.057 4.057 27 N -0.198 5.198 28 C -0.056 4.056 29 C -0.185 4.185 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.249 0.751 36 H 0.158 0.842 37 H 0.078 0.922 38 H 0.123 0.877 39 H 0.054 0.946 40 H 0.045 0.955 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.099 0.901 46 H 0.154 0.846 47 H 0.173 0.827 48 H 0.174 0.826 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.151 1.290 22.684 24.885 hybrid contribution 0.463 1.002 -1.391 1.775 sum -9.688 2.292 21.293 23.505 Atomic orbital electron populations 1.21901 0.92916 1.02984 1.02711 1.20418 0.97202 0.99926 0.90944 0.88877 1.21477 1.00886 0.95347 0.82095 1.45750 1.57050 1.28195 1.04828 1.20435 0.79724 0.85606 0.84834 1.90395 1.38400 1.24325 1.84437 1.19797 0.82455 0.85006 0.84654 1.90693 1.37508 1.28437 1.86075 1.48265 1.46569 1.28509 1.05499 1.23450 0.92244 0.85123 1.06790 1.21907 0.94462 1.03221 0.96345 1.18682 0.94474 0.91082 0.93044 1.21150 1.04991 0.93499 1.35555 0.92796 1.24968 0.98101 0.95019 0.95891 1.69835 1.36583 0.99747 1.46719 0.86676 0.83342 0.77721 0.80358 1.20363 1.21299 1.20333 1.22013 0.94535 1.00869 0.98627 1.21901 0.98713 0.95783 0.85175 1.20057 0.94810 0.93991 0.95059 1.22103 0.99203 1.01699 0.95660 1.22783 0.96727 0.90384 0.95817 1.67694 1.12172 1.09156 1.30756 1.22794 0.92838 1.00019 0.89947 1.22064 1.01930 0.95122 0.99379 0.91425 0.91834 0.91897 0.90544 0.90475 0.75144 0.84226 0.92210 0.87664 0.94616 0.95460 0.92893 0.91856 0.92906 0.91497 0.90116 0.84633 0.82695 0.82644 0.84589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 8.89 37.16 0.33 -0.49 16 2 C -0.07 -0.41 2.63 -91.78 -0.24 -0.65 16 3 H 0.09 0.51 7.95 -51.93 -0.41 0.10 16 4 C 0.13 1.09 4.81 -4.05 -0.02 1.07 16 5 N -0.70 -7.55 5.28 -60.74 -0.32 -7.87 16 6 C 0.51 7.61 7.80 -11.59 -0.09 7.52 16 7 O -0.50 -8.45 13.02 5.50 0.07 -8.38 16 8 C 0.50 8.52 7.76 -11.59 -0.09 8.43 16 9 O -0.55 -9.72 15.91 5.50 0.09 -9.63 16 10 N -0.56 -10.30 2.98 -173.54 -0.52 -10.82 16 11 C 0.04 0.87 6.20 -3.93 -0.02 0.84 16 12 C -0.12 -2.81 5.14 -26.83 -0.14 -2.95 16 13 C 0.05 1.11 2.07 -91.73 -0.19 0.92 16 14 C -0.51 -13.84 8.56 -34.44 -0.29 -14.14 16 15 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 16 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 17 N -0.89 -24.91 11.30 55.43 0.63 -24.28 16 18 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 C -0.12 -2.49 5.30 -26.61 -0.14 -2.64 16 23 C 0.11 1.91 6.43 -3.72 -0.02 1.89 16 24 C -0.03 -0.21 4.79 -104.32 -0.50 -0.71 16 25 C -0.17 -1.12 9.76 -39.44 -0.39 -1.51 16 26 C 0.10 0.76 11.18 -17.55 -0.20 0.56 16 27 N -0.49 -4.57 10.36 -13.25 -0.14 -4.70 16 28 C 0.10 0.78 11.18 -17.54 -0.20 0.59 16 29 C -0.17 -1.15 8.89 -39.44 -0.35 -1.50 16 30 H 0.07 0.39 7.18 -51.93 -0.37 0.01 16 31 H 0.06 0.35 7.49 -51.93 -0.39 -0.04 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.68 7.66 -51.93 -0.40 0.28 16 35 H 0.41 3.85 7.14 -40.82 -0.29 3.55 16 36 H 0.14 2.73 3.78 -56.98 -0.22 2.52 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.11 2.73 6.03 -51.93 -0.31 2.41 16 39 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 43 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.08 1.38 7.01 -51.92 -0.36 1.02 16 46 H 0.14 0.64 8.01 -52.48 -0.42 0.22 16 47 H 0.16 0.80 8.06 -52.48 -0.42 0.38 16 48 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 49 H 0.14 0.74 7.35 -52.49 -0.39 0.36 16 LS Contribution 393.32 15.07 5.93 5.93 Total: -1.00 -31.39 393.32 -9.26 -40.65 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -7.33 Total: 4.25 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -2.64 Total: -1.20 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: -0.35 Total: -47.67 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.16 Total: -18.01 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.39 -9.26 -40.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330001708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.326 kcal (2) G-P(sol) polarization free energy of solvation -31.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds