Wall clock time and date at job start Wed Apr 1 2020 03:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47117 * 2 1 4 4 C 1.53003 * 109.47156 * 240.00083 * 2 1 3 5 5 N 1.46906 * 109.46780 * 65.00355 * 4 2 1 6 6 C 1.52995 * 109.47094 * 120.00465 * 2 1 3 7 7 N 1.46498 * 109.46841 * 294.99810 * 6 2 1 8 8 C 1.34787 * 120.00057 * 180.02562 * 7 6 2 9 9 O 1.21348 * 119.99763 * 359.97438 * 8 7 6 10 10 C 1.49445 * 120.00199 * 180.02562 * 8 7 6 11 11 O 1.21352 * 120.00014 * 353.78505 * 10 8 7 12 12 N 1.34773 * 119.99961 * 173.78177 * 10 8 7 13 13 C 1.47152 * 121.37557 * 174.44826 * 12 10 8 14 14 C 1.52784 * 107.89398 * 115.81478 * 13 12 10 15 15 C 1.50574 * 110.84612 * 47.32886 * 14 13 12 16 16 C 1.41421 * 117.62488 * 160.26517 * 15 14 13 17 17 C 1.41394 * 119.96567 * 359.19413 * 16 15 14 18 18 H 1.08004 * 119.99597 * 330.67562 * 17 16 15 19 19 C 1.39944 * 120.00222 * 150.68103 * 17 16 15 20 20 N 1.30829 * 119.99834 * 163.63780 * 19 17 16 21 21 Si 1.86801 * 119.99798 * 343.64056 * 19 17 16 22 22 H 1.48493 * 109.47358 * 95.35077 * 21 19 17 23 23 H 1.48511 * 109.46811 * 215.34826 * 21 19 17 24 24 H 1.48503 * 109.47261 * 335.34545 * 21 19 17 25 25 C 1.40403 * 120.06964 * 179.18819 * 16 15 14 26 26 C 1.37649 * 119.53836 * 0.25848 * 25 16 15 27 27 C 1.38336 * 119.98946 * 0.15496 * 26 25 16 28 28 C 1.37048 * 123.01074 * 340.17585 * 15 14 13 29 29 C 1.46672 * 121.36015 * 354.39776 * 12 10 8 30 30 H 1.08992 * 109.47620 * 299.99731 * 1 2 3 31 31 H 1.09007 * 109.47228 * 59.99651 * 1 2 3 32 32 H 1.09003 * 109.47316 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47090 * 184.99681 * 4 2 1 34 34 H 1.09000 * 109.47568 * 305.00099 * 4 2 1 35 35 H 1.00906 * 110.99489 * 179.97438 * 5 4 2 36 36 H 1.00894 * 110.99636 * 303.94815 * 5 4 2 37 37 H 1.09006 * 109.47451 * 174.99923 * 6 2 1 38 38 H 1.09000 * 109.47396 * 54.99700 * 6 2 1 39 39 H 0.96998 * 120.00751 * 0.02562 * 7 6 2 40 40 H 1.08999 * 109.72741 * 356.22894 * 13 12 10 41 41 H 1.08998 * 109.78665 * 235.43254 * 13 12 10 42 42 H 1.09004 * 109.19937 * 286.99003 * 14 13 12 43 43 H 1.08999 * 109.19823 * 167.66402 * 14 13 12 44 44 H 0.96997 * 119.99218 * 179.97438 * 20 19 17 45 45 H 1.07994 * 120.23144 * 180.27414 * 25 16 15 46 46 H 1.08000 * 120.00468 * 180.13191 * 26 25 16 47 47 H 1.07995 * 119.47358 * 179.97438 * 27 26 25 48 48 H 1.09000 * 109.42665 * 104.28313 * 29 12 10 49 49 H 1.08998 * 109.43134 * 344.43934 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6514 0.0376 -2.4456 6 6 2.0399 -0.7213 1.2491 7 7 1.6524 0.0352 2.4423 8 6 1.9964 -0.4133 3.6659 9 8 2.6267 -1.4440 3.7792 10 6 1.6005 0.3582 4.8831 11 8 1.0693 1.4432 4.7677 12 7 1.8335 -0.1510 6.1090 13 6 1.5678 0.6312 7.3267 14 6 0.4603 -0.0758 8.1064 15 6 0.7409 -1.5509 8.2175 16 6 0.0756 -2.2701 9.2373 17 6 -0.8029 -1.5975 10.1178 18 1 -0.6388 -0.5563 10.3533 19 6 -1.8849 -2.2810 10.6841 20 7 -2.5022 -1.7815 11.7238 21 14 -2.4476 -3.9063 9.9553 22 1 -1.8173 -5.0267 10.6986 23 1 -3.9252 -4.0112 10.0614 24 1 -2.0479 -3.9731 8.5267 25 6 0.2863 -3.6512 9.3764 26 6 1.1474 -4.2962 8.5177 27 6 1.8004 -3.5830 7.5285 28 6 1.6011 -2.2124 7.3803 29 6 2.3613 -1.5083 6.2840 30 1 -0.3634 0.5137 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1262 -0.7994 -1.2056 34 1 1.6054 -1.7198 -1.2953 35 1 1.9772 -0.4185 -3.2847 36 1 0.6529 0.1794 -2.4753 37 1 3.1263 -0.7996 1.2055 38 1 1.6053 -1.7199 1.2950 39 1 1.1482 0.8590 2.3518 40 1 1.2443 1.6361 7.0552 41 1 2.4706 0.6851 7.9349 42 1 -0.4897 0.0706 7.5923 43 1 0.3962 0.3530 9.1065 44 1 -3.2524 -2.2551 12.1160 45 1 -0.2238 -4.2038 10.1515 46 1 1.3134 -5.3588 8.6166 47 1 2.4745 -4.0974 6.8596 48 1 3.4167 -1.4552 6.5510 49 1 2.2512 -2.0631 5.3523 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330034203.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:55 Heat of formation + Delta-G solvation = -66.939454 kcal Electronic energy + Delta-G solvation = -30239.533556 eV Core-core repulsion = 26165.095542 eV Total energy + Delta-G solvation = -4074.438014 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.07907 -40.48322 -39.53273 -38.31791 -37.29529 -35.55017 -35.35451 -33.72294 -32.36675 -32.17805 -30.85901 -28.35593 -27.33144 -26.77569 -26.04567 -24.93422 -23.51816 -22.35987 -21.84655 -21.30582 -20.25905 -19.21201 -18.50640 -18.18378 -17.53588 -17.39694 -16.96860 -16.81349 -16.58261 -16.28311 -16.13521 -15.82962 -15.43787 -15.22934 -15.02540 -14.72431 -14.56298 -14.43995 -14.25557 -13.93522 -13.75463 -13.72381 -13.55813 -13.40236 -13.27464 -13.14505 -12.76968 -12.62409 -12.40369 -12.26324 -12.10625 -11.93358 -11.80919 -11.80175 -11.61562 -11.24367 -11.03328 -10.49044 -10.29707 -9.88378 -9.58950 -9.35676 -9.16844 -8.88586 -6.46578 0.28107 0.78577 0.79178 1.21678 1.24170 1.37751 1.45838 2.05834 2.10293 2.39197 2.59756 3.23088 3.44244 3.54135 3.86456 3.87963 3.94484 4.04479 4.06286 4.15884 4.30470 4.43348 4.49056 4.52277 4.54447 4.55692 4.67187 4.70070 4.74542 4.77687 4.87184 4.92218 4.92594 4.97990 5.04253 5.12191 5.20847 5.23399 5.29124 5.34237 5.37297 5.67885 5.80764 5.91138 5.95467 6.01558 6.16107 6.24875 6.29526 6.42956 6.59228 6.61548 6.76537 6.85363 6.87672 8.18800 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015885 B = 0.002468 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.193823 B =11343.245538 C =11509.953074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.094 4.094 3 H 0.086 0.914 4 C 0.071 3.929 5 N -0.859 5.859 6 C 0.121 3.879 7 N -0.685 5.685 8 C 0.512 3.488 9 O -0.525 6.525 10 C 0.505 3.495 11 O -0.547 6.547 12 N -0.576 5.576 13 C 0.116 3.884 14 C -0.064 4.064 15 C -0.176 4.176 16 C 0.071 3.929 17 C -0.473 4.473 18 H 0.069 0.931 19 C 0.047 3.953 20 N -0.850 5.850 21 Si 0.963 3.037 22 H -0.261 1.261 23 H -0.284 1.284 24 H -0.257 1.257 25 C -0.259 4.259 26 C -0.084 4.084 27 C -0.219 4.219 28 C -0.070 4.070 29 C 0.135 3.865 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.037 0.963 35 H 0.351 0.649 36 H 0.346 0.654 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.418 0.582 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.048 0.952 43 H 0.073 0.927 44 H 0.291 0.709 45 H 0.093 0.907 46 H 0.126 0.874 47 H 0.130 0.870 48 H 0.093 0.907 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.007 1.043 -23.749 25.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.114 4.114 3 H 0.105 0.895 4 C -0.061 4.061 5 N -0.391 5.391 6 C -0.002 4.002 7 N -0.338 5.338 8 C 0.293 3.707 9 O -0.403 6.403 10 C 0.288 3.712 11 O -0.426 6.426 12 N -0.307 5.307 13 C -0.005 4.005 14 C -0.102 4.102 15 C -0.177 4.177 16 C 0.069 3.931 17 C -0.502 4.502 18 H 0.087 0.913 19 C -0.167 4.167 20 N -0.477 5.477 21 Si 0.788 3.212 22 H -0.187 1.187 23 H -0.211 1.211 24 H -0.181 1.181 25 C -0.278 4.278 26 C -0.102 4.102 27 C -0.239 4.239 28 C -0.071 4.071 29 C 0.014 3.986 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.055 0.945 35 H 0.165 0.835 36 H 0.160 0.840 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.255 0.745 40 H 0.117 0.883 41 H 0.111 0.889 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.111 0.889 46 H 0.144 0.856 47 H 0.148 0.852 48 H 0.111 0.889 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.431 1.526 -23.242 24.771 hybrid contribution -1.521 -1.032 0.504 1.906 sum 6.910 0.494 -22.738 23.770 Atomic orbital electron populations 1.21919 0.94358 1.02308 1.02597 1.21309 0.96648 1.00797 0.92609 0.89536 1.21662 1.00827 0.94396 0.89195 1.58709 1.20540 1.54933 1.04936 1.21629 1.00905 0.95321 0.82299 1.45762 1.55385 1.28095 1.04516 1.19901 0.80718 0.85092 0.85023 1.90576 1.40025 1.24089 1.85657 1.20259 0.79912 0.86257 0.84784 1.90719 1.42989 1.22403 1.86458 1.48002 1.61188 1.16272 1.05249 1.21810 0.99144 0.95397 0.84165 1.20356 0.97528 0.92275 1.00032 1.19577 1.04244 0.95813 0.98112 1.17924 0.92197 0.92219 0.90781 1.19506 1.09429 0.99000 1.22309 0.91331 1.26741 0.95791 1.01460 0.92741 1.69710 1.19532 1.40861 1.17585 0.85526 0.76244 0.78421 0.80977 1.18699 1.21077 1.18126 1.21055 1.06768 0.95551 1.04455 1.20882 0.95457 0.99286 0.94559 1.20690 1.06936 0.93146 1.03110 1.19745 0.96816 0.94479 0.96044 1.21410 0.96761 0.80421 1.00023 0.92812 0.90927 0.92466 0.90489 0.94521 0.83507 0.84047 0.90305 0.90881 0.74454 0.88308 0.88914 0.93335 0.90877 0.89831 0.88926 0.85615 0.85222 0.88927 0.84641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.84 71.98 0.64 -1.01 16 2 C -0.09 -1.01 2.63 -10.80 -0.03 -1.04 16 3 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 4 C 0.07 0.65 6.24 86.30 0.54 1.19 16 5 N -0.86 -7.36 9.62 -186.70 -1.80 -9.16 16 6 C 0.12 1.77 5.06 86.38 0.44 2.21 16 7 N -0.68 -13.20 5.28 -464.41 -2.45 -15.65 16 8 C 0.51 13.40 7.75 87.27 0.68 14.07 16 9 O -0.53 -15.11 13.22 -3.24 -0.04 -15.16 16 10 C 0.50 15.49 7.77 87.27 0.68 16.16 16 11 O -0.55 -18.18 16.00 -3.25 -0.05 -18.23 16 12 N -0.58 -18.54 2.93 -825.79 -2.42 -20.96 16 13 C 0.12 3.77 6.43 86.18 0.55 4.33 16 14 C -0.06 -2.59 5.28 29.74 0.16 -2.43 16 15 C -0.18 -7.88 5.82 -19.40 -0.11 -7.99 16 16 C 0.07 3.60 5.15 -21.19 -0.11 3.49 16 17 C -0.47 -25.98 8.83 23.46 0.21 -25.77 16 18 H 0.07 3.97 6.48 -2.91 -0.02 3.95 16 19 C 0.05 2.52 5.43 85.26 0.46 2.98 16 20 N -0.85 -46.74 13.93 21.83 0.30 -46.44 16 21 Si 0.96 43.91 24.44 68.60 1.68 45.59 16 22 H -0.26 -11.31 6.72 99.48 0.67 -10.64 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 24 H -0.26 -12.10 6.73 99.48 0.67 -11.44 16 25 C -0.26 -12.29 7.06 22.66 0.16 -12.13 16 26 C -0.08 -3.40 10.03 22.15 0.22 -3.18 16 27 C -0.22 -8.28 9.63 22.55 0.22 -8.06 16 28 C -0.07 -2.75 5.82 -19.84 -0.12 -2.86 16 29 C 0.13 4.32 5.61 85.65 0.48 4.80 16 30 H 0.05 0.67 7.18 -2.39 -0.02 0.65 16 31 H 0.07 0.62 6.68 -2.38 -0.02 0.60 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 33 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.04 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.35 2.05 9.08 -89.69 -0.81 1.24 16 36 H 0.35 2.41 7.25 -89.70 -0.65 1.76 16 37 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 39 H 0.42 7.34 7.14 -92.71 -0.66 6.68 16 40 H 0.10 3.05 7.10 -2.39 -0.02 3.03 16 41 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 42 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 43 H 0.07 3.08 6.44 -2.39 -0.02 3.06 16 44 H 0.29 14.52 8.30 -92.71 -0.77 13.75 16 45 H 0.09 4.44 4.48 -2.91 -0.01 4.43 16 46 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 47 H 0.13 4.04 8.05 -2.91 -0.02 4.01 16 48 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 49 H 0.14 4.31 4.69 -21.67 -0.10 4.21 16 Total: -1.00 -64.10 383.55 -0.99 -65.09 By element: Atomic # 1 Polarization: 31.43 SS G_CDS: -1.27 Total: 30.16 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: 5.06 Total: -15.25 kcal Atomic # 7 Polarization: -85.83 SS G_CDS: -6.37 Total: -92.20 kcal Atomic # 8 Polarization: -33.29 SS G_CDS: -0.09 Total: -33.39 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.68 Total: 45.59 kcal Total: -64.10 -0.99 -65.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330034203.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.849 kcal (2) G-P(sol) polarization free energy of solvation -64.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds