Wall clock time and date at job start Wed Apr 1 2020 03:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46901 * 111.00038 * 2 1 4 4 C 1.52992 * 109.47462 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47356 * 295.00690 * 4 3 2 6 6 C 1.53002 * 109.47499 * 175.00064 * 4 3 2 7 7 N 1.46509 * 109.47192 * 54.99828 * 4 3 2 8 8 C 1.34774 * 120.00215 * 205.00083 * 7 4 3 9 9 O 1.21354 * 120.00139 * 0.02562 * 8 7 4 10 10 C 1.49451 * 119.99878 * 180.02562 * 8 7 4 11 11 O 1.21349 * 120.00254 * 353.63385 * 10 8 7 12 12 N 1.34774 * 119.99879 * 173.64207 * 10 8 7 13 13 C 1.47244 * 121.34593 * 172.76886 * 12 10 8 14 14 C 1.52793 * 107.85740 * 115.94281 * 13 12 10 15 15 C 1.50575 * 110.87590 * 47.37249 * 14 13 12 16 16 C 1.41408 * 117.63001 * 160.36258 * 15 14 13 17 17 C 1.41394 * 119.96648 * 358.86778 * 16 15 14 18 18 H 1.08002 * 120.00433 * 337.09467 * 17 16 15 19 19 C 1.39948 * 119.99867 * 156.82099 * 17 16 15 20 20 N 1.30817 * 120.00146 * 328.02791 * 19 17 16 21 21 Si 1.86802 * 119.99953 * 148.03131 * 19 17 16 22 22 H 1.48499 * 109.47213 * 94.98776 * 21 19 17 23 23 H 1.48492 * 109.47223 * 214.98957 * 21 19 17 24 24 H 1.48497 * 109.47112 * 334.99373 * 21 19 17 25 25 C 1.40406 * 120.06725 * 179.14788 * 16 15 14 26 26 C 1.37645 * 119.53964 * 359.60815 * 25 16 15 27 27 C 1.38335 * 119.98781 * 0.67143 * 26 25 16 28 28 C 1.37048 * 123.00070 * 339.80937 * 15 14 13 29 29 C 1.46663 * 121.34409 * 352.73760 * 12 10 8 30 30 H 1.09004 * 109.47478 * 299.99426 * 1 2 3 31 31 H 1.08999 * 109.47677 * 59.99888 * 1 2 3 32 32 H 1.09009 * 109.46989 * 179.97438 * 1 2 3 33 33 H 1.00901 * 111.00384 * 123.95747 * 2 1 3 34 34 H 1.09003 * 109.46652 * 59.99841 * 3 2 1 35 35 H 1.09003 * 109.47027 * 300.00548 * 3 2 1 36 36 H 1.09002 * 109.46965 * 299.99963 * 6 4 3 37 37 H 1.08997 * 109.47041 * 59.99903 * 6 4 3 38 38 H 1.09000 * 109.47120 * 179.97438 * 6 4 3 39 39 H 0.97002 * 119.99225 * 25.00101 * 7 4 3 40 40 H 1.09002 * 109.78045 * 356.35575 * 13 12 10 41 41 H 1.08994 * 109.82934 * 235.55933 * 13 12 10 42 42 H 1.09004 * 109.19492 * 287.01266 * 14 13 12 43 43 H 1.08990 * 109.15717 * 167.70386 * 14 13 12 44 44 H 0.96998 * 120.00321 * 180.02562 * 20 19 17 45 45 H 1.07998 * 120.22999 * 179.82097 * 25 16 15 46 46 H 1.07998 * 120.00701 * 180.40862 * 26 25 16 47 47 H 1.08000 * 119.47194 * 179.72562 * 27 26 25 48 48 H 1.08996 * 109.43087 * 344.45048 * 29 12 10 49 49 H 1.08999 * 109.42847 * 104.29571 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5248 1.3307 -0.0006 5 1 3.8768 0.8866 0.9305 6 6 4.0729 2.7536 -0.1264 7 7 3.9914 0.5258 -1.1324 8 6 5.1978 -0.0727 -1.0817 9 8 5.8975 0.0545 -0.0984 10 6 5.6740 -0.8933 -2.2365 11 8 4.9310 -1.1165 -3.1696 12 7 6.9287 -1.3854 -2.2415 13 6 7.3790 -2.3243 -3.2826 14 6 8.4890 -1.6418 -4.0805 15 6 9.5013 -1.0117 -3.1609 16 6 10.7784 -0.7197 -3.6931 17 6 11.0738 -1.0418 -5.0378 18 1 10.5108 -1.8114 -5.5450 19 6 12.0920 -0.3596 -5.7133 20 7 12.3424 0.8921 -5.4269 21 14 13.0934 -1.2361 -7.0241 22 1 12.5076 -0.9615 -8.3608 23 1 14.4944 -0.7454 -6.9874 24 1 13.0742 -2.6984 -6.7663 25 6 11.7555 -0.1154 -2.8858 26 6 11.4577 0.1966 -1.5787 27 6 10.2076 -0.0981 -1.0650 28 6 9.2323 -0.7054 -1.8525 29 6 7.9008 -1.0070 -1.2106 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0278 -0.0005 33 1 1.8306 -0.5262 0.7813 34 1 1.6458 1.8947 0.8900 35 1 1.6458 1.8948 -0.8900 36 1 3.7209 3.1976 -1.0575 37 1 3.7258 3.3524 0.7157 38 1 5.1625 2.7246 -0.1263 39 1 3.4319 0.4239 -1.9183 40 1 6.5472 -2.5695 -3.9430 41 1 7.7629 -3.2333 -2.8197 42 1 8.0521 -0.8706 -4.7150 43 1 8.9861 -2.3822 -4.7071 44 1 13.0478 1.3651 -5.8954 45 1 12.7327 0.1061 -3.2887 46 1 12.2014 0.6675 -0.9529 47 1 9.9844 0.1463 -0.0370 48 1 7.5440 -0.1224 -0.6830 49 1 8.0170 -1.8279 -0.5030 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330040951.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:08 Heat of formation + Delta-G solvation = -40.400449 kcal Electronic energy + Delta-G solvation = -30454.725267 eV Core-core repulsion = 26381.438070 eV Total energy + Delta-G solvation = -4073.287196 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.70449 -38.98917 -37.90210 -37.22329 -35.63950 -34.51568 -33.69107 -31.92101 -31.18419 -30.14614 -28.89986 -27.32144 -25.83362 -25.06769 -24.20992 -23.69451 -22.58091 -21.12668 -20.61401 -20.19814 -18.81411 -17.39306 -17.11507 -16.85128 -16.27264 -15.86117 -15.58214 -15.25448 -15.06231 -14.83037 -14.57276 -14.33813 -14.17527 -14.01766 -13.44267 -13.40101 -13.18942 -12.93167 -12.71695 -12.52863 -12.48794 -12.45304 -12.24486 -11.84762 -11.75380 -11.63486 -11.45461 -11.41178 -11.17956 -11.14773 -10.86198 -10.63178 -10.47818 -10.25188 -9.72265 -9.36094 -9.25043 -9.13064 -8.90724 -8.84979 -8.29723 -7.40556 -7.20676 -6.89715 -4.31774 1.65536 2.51424 2.76954 2.92000 3.05991 3.08689 3.23321 3.43049 3.65626 3.83348 3.90290 4.41845 4.50390 4.56342 4.75780 4.97965 5.00505 5.12409 5.15827 5.31180 5.41813 5.49535 5.51940 5.53691 5.69375 5.70736 5.84319 5.93422 5.96462 6.05862 6.13108 6.27795 6.38575 6.46281 6.49452 6.57193 6.70646 6.79609 6.91311 6.93888 7.07289 7.12419 7.24125 7.32978 7.59287 7.62019 7.90780 7.93074 8.00686 8.08209 8.23756 8.25434 8.59236 8.84887 8.96488 10.06312 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019220 B = 0.002484 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.495213 B =11267.248136 C =11799.317364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.693 5.693 3 C 0.048 3.952 4 C 0.142 3.858 5 H 0.090 0.910 6 C -0.166 4.166 7 N -0.684 5.684 8 C 0.512 3.488 9 O -0.516 6.516 10 C 0.507 3.493 11 O -0.534 6.534 12 N -0.569 5.569 13 C 0.109 3.891 14 C -0.065 4.065 15 C -0.185 4.185 16 C 0.119 3.881 17 C -0.471 4.471 18 H 0.084 0.916 19 C 0.089 3.911 20 N -0.771 5.771 21 Si 0.893 3.107 22 H -0.270 1.270 23 H -0.275 1.275 24 H -0.258 1.258 25 C -0.183 4.183 26 C -0.094 4.094 27 C -0.242 4.242 28 C -0.069 4.069 29 C 0.133 3.867 30 H 0.021 0.979 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.344 0.656 34 H 0.048 0.952 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.415 0.585 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.078 0.922 44 H 0.282 0.718 45 H 0.102 0.898 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.124 0.876 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.845 0.501 8.844 19.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.323 5.323 3 C -0.082 4.082 4 C 0.038 3.962 5 H 0.108 0.892 6 C -0.224 4.224 7 N -0.338 5.338 8 C 0.293 3.707 9 O -0.393 6.393 10 C 0.289 3.711 11 O -0.412 6.412 12 N -0.301 5.301 13 C -0.012 4.012 14 C -0.102 4.102 15 C -0.186 4.186 16 C 0.117 3.883 17 C -0.499 4.499 18 H 0.102 0.898 19 C -0.132 4.132 20 N -0.394 5.394 21 Si 0.716 3.284 22 H -0.195 1.195 23 H -0.200 1.200 24 H -0.181 1.181 25 C -0.202 4.202 26 C -0.113 4.113 27 C -0.262 4.262 28 C -0.070 4.070 29 C 0.012 3.988 30 H 0.039 0.961 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.162 0.838 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.252 0.748 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.121 0.879 46 H 0.106 0.894 47 H 0.106 0.894 48 H 0.141 0.859 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.580 0.620 8.306 18.555 hybrid contribution 0.293 0.086 -0.041 0.308 sum -16.287 0.706 8.266 18.278 Atomic orbital electron populations 1.22195 0.87431 1.02132 1.00368 1.60328 1.07923 1.13603 1.50474 1.22348 0.93516 0.90407 1.01891 1.21051 0.92756 0.91847 0.90596 0.89197 1.22177 1.02782 0.95100 1.02378 1.45640 1.17886 1.49470 1.20769 1.20250 0.82258 0.80220 0.87956 1.90613 1.53623 1.61464 1.33551 1.19887 0.82787 0.81487 0.86944 1.90717 1.55179 1.59465 1.35843 1.47959 1.09989 1.43508 1.28616 1.21878 0.98157 0.91316 0.89859 1.20384 0.93663 0.99365 0.96829 1.19148 0.94941 1.10937 0.93600 1.17487 0.89251 0.88642 0.92922 1.19535 1.15506 1.18099 0.96759 0.89784 1.25898 0.96191 0.93647 0.97468 1.69928 1.25017 1.08131 1.36296 0.86562 0.79418 0.81701 0.80703 1.19538 1.19988 1.18137 1.20948 0.99286 1.07072 0.92897 1.20520 0.95562 0.99570 0.95624 1.20103 0.95339 1.12281 0.98485 1.19202 0.93609 1.00135 0.94013 1.21289 0.86441 1.02589 0.88523 0.96071 0.91577 0.91256 0.83823 0.93429 0.90064 0.92006 0.91413 0.91189 0.74827 0.89427 0.90904 0.92149 0.90415 0.90704 0.87945 0.89437 0.89364 0.85857 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.70 60.06 0.64 0.81 16 2 N -0.69 -5.28 6.58 -121.13 -0.80 -6.07 16 3 C 0.05 0.33 5.24 -3.83 -0.02 0.31 16 4 C 0.14 1.30 2.82 -67.93 -0.19 1.11 16 5 H 0.09 0.90 7.58 -51.93 -0.39 0.50 16 6 C -0.17 -1.46 9.48 37.16 0.35 -1.11 16 7 N -0.68 -8.07 4.79 -54.23 -0.26 -8.33 16 8 C 0.51 7.79 7.70 -11.59 -0.09 7.70 16 9 O -0.52 -8.58 12.94 5.49 0.07 -8.51 16 10 C 0.51 8.86 7.76 -11.59 -0.09 8.77 16 11 O -0.53 -9.95 16.01 5.50 0.09 -9.86 16 12 N -0.57 -10.40 2.94 -174.87 -0.51 -10.91 16 13 C 0.11 1.93 6.43 -3.74 -0.02 1.91 16 14 C -0.06 -1.34 5.25 -28.05 -0.15 -1.49 16 15 C -0.18 -4.38 5.82 -103.91 -0.60 -4.98 16 16 C 0.12 3.10 5.57 -106.67 -0.59 2.51 16 17 C -0.47 -12.06 8.29 -37.74 -0.31 -12.38 16 18 H 0.08 2.05 6.29 -52.49 -0.33 1.72 16 19 C 0.09 2.20 4.76 -17.34 -0.08 2.12 16 20 N -0.77 -19.68 11.84 55.55 0.66 -19.02 16 21 Si 0.89 18.18 29.66 -169.99 -5.04 13.14 16 22 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 23 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 24 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 25 C -0.18 -4.70 8.77 -38.98 -0.34 -5.05 16 26 C -0.09 -2.21 10.03 -39.76 -0.40 -2.61 16 27 C -0.24 -5.43 9.63 -39.16 -0.38 -5.81 16 28 C -0.07 -1.53 5.82 -104.59 -0.61 -2.14 16 29 C 0.13 2.51 5.55 -5.03 -0.03 2.48 16 30 H 0.02 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.40 8.14 -51.92 -0.42 -0.03 16 33 H 0.34 2.52 8.82 -39.29 -0.35 2.17 16 34 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.41 4.79 8.09 -40.82 -0.33 4.46 16 40 H 0.09 1.47 7.11 -51.93 -0.37 1.10 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 43 H 0.08 1.55 6.41 -51.93 -0.33 1.22 16 44 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 45 H 0.10 2.70 6.59 -52.49 -0.35 2.35 16 46 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 47 H 0.09 1.78 8.05 -52.49 -0.42 1.36 16 48 H 0.12 2.36 4.81 -52.56 -0.25 2.11 16 49 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 395.36 15.07 5.96 5.96 Total: -1.00 -29.18 395.36 -10.08 -39.27 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -7.33 Total: 12.18 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -2.91 Total: -7.83 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: -0.91 Total: -44.33 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: 0.16 Total: -18.37 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.04 Total: 13.14 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.18 -10.08 -39.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330040951.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.135 kcal (2) G-P(sol) polarization free energy of solvation -29.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds