Wall clock time and date at job start Wed Apr 1 2020 03:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46901 * 111.00038 * 2 1 4 4 C 1.52992 * 109.47462 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47356 * 295.00690 * 4 3 2 6 6 C 1.53002 * 109.47499 * 175.00064 * 4 3 2 7 7 N 1.46509 * 109.47192 * 54.99828 * 4 3 2 8 8 C 1.34774 * 120.00215 * 205.00083 * 7 4 3 9 9 O 1.21354 * 120.00139 * 0.02562 * 8 7 4 10 10 C 1.49451 * 119.99878 * 180.02562 * 8 7 4 11 11 O 1.21349 * 120.00254 * 353.63385 * 10 8 7 12 12 N 1.34774 * 119.99879 * 173.64207 * 10 8 7 13 13 C 1.47244 * 121.34593 * 172.76886 * 12 10 8 14 14 C 1.52793 * 107.85740 * 115.94281 * 13 12 10 15 15 C 1.50575 * 110.87590 * 47.37249 * 14 13 12 16 16 C 1.41408 * 117.63001 * 160.36258 * 15 14 13 17 17 C 1.41394 * 119.96648 * 358.86778 * 16 15 14 18 18 H 1.08002 * 120.00433 * 337.09467 * 17 16 15 19 19 C 1.39948 * 119.99867 * 156.82099 * 17 16 15 20 20 N 1.30817 * 120.00146 * 328.02791 * 19 17 16 21 21 Si 1.86802 * 119.99953 * 148.03131 * 19 17 16 22 22 H 1.48499 * 109.47213 * 94.98776 * 21 19 17 23 23 H 1.48492 * 109.47223 * 214.98957 * 21 19 17 24 24 H 1.48497 * 109.47112 * 334.99373 * 21 19 17 25 25 C 1.40406 * 120.06725 * 179.14788 * 16 15 14 26 26 C 1.37645 * 119.53964 * 359.60815 * 25 16 15 27 27 C 1.38335 * 119.98781 * 0.67143 * 26 25 16 28 28 C 1.37048 * 123.00070 * 339.80937 * 15 14 13 29 29 C 1.46663 * 121.34409 * 352.73760 * 12 10 8 30 30 H 1.09004 * 109.47478 * 299.99426 * 1 2 3 31 31 H 1.08999 * 109.47677 * 59.99888 * 1 2 3 32 32 H 1.09009 * 109.46989 * 179.97438 * 1 2 3 33 33 H 1.00901 * 111.00384 * 123.95747 * 2 1 3 34 34 H 1.09003 * 109.46652 * 59.99841 * 3 2 1 35 35 H 1.09003 * 109.47027 * 300.00548 * 3 2 1 36 36 H 1.09002 * 109.46965 * 299.99963 * 6 4 3 37 37 H 1.08997 * 109.47041 * 59.99903 * 6 4 3 38 38 H 1.09000 * 109.47120 * 179.97438 * 6 4 3 39 39 H 0.97002 * 119.99225 * 25.00101 * 7 4 3 40 40 H 1.09002 * 109.78045 * 356.35575 * 13 12 10 41 41 H 1.08994 * 109.82934 * 235.55933 * 13 12 10 42 42 H 1.09004 * 109.19492 * 287.01266 * 14 13 12 43 43 H 1.08990 * 109.15717 * 167.70386 * 14 13 12 44 44 H 0.96998 * 120.00321 * 180.02562 * 20 19 17 45 45 H 1.07998 * 120.22999 * 179.82097 * 25 16 15 46 46 H 1.07998 * 120.00701 * 180.40862 * 26 25 16 47 47 H 1.08000 * 119.47194 * 179.72562 * 27 26 25 48 48 H 1.08996 * 109.43087 * 344.45048 * 29 12 10 49 49 H 1.08999 * 109.42847 * 104.29571 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5248 1.3307 -0.0006 5 1 3.8768 0.8866 0.9305 6 6 4.0729 2.7536 -0.1264 7 7 3.9914 0.5258 -1.1324 8 6 5.1978 -0.0727 -1.0817 9 8 5.8975 0.0545 -0.0984 10 6 5.6740 -0.8933 -2.2365 11 8 4.9310 -1.1165 -3.1696 12 7 6.9287 -1.3854 -2.2415 13 6 7.3790 -2.3243 -3.2826 14 6 8.4890 -1.6418 -4.0805 15 6 9.5013 -1.0117 -3.1609 16 6 10.7784 -0.7197 -3.6931 17 6 11.0738 -1.0418 -5.0378 18 1 10.5108 -1.8114 -5.5450 19 6 12.0920 -0.3596 -5.7133 20 7 12.3424 0.8921 -5.4269 21 14 13.0934 -1.2361 -7.0241 22 1 12.5076 -0.9615 -8.3608 23 1 14.4944 -0.7454 -6.9874 24 1 13.0742 -2.6984 -6.7663 25 6 11.7555 -0.1154 -2.8858 26 6 11.4577 0.1966 -1.5787 27 6 10.2076 -0.0981 -1.0650 28 6 9.2323 -0.7054 -1.8525 29 6 7.9008 -1.0070 -1.2106 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0278 -0.0005 33 1 1.8306 -0.5262 0.7813 34 1 1.6458 1.8947 0.8900 35 1 1.6458 1.8948 -0.8900 36 1 3.7209 3.1976 -1.0575 37 1 3.7258 3.3524 0.7157 38 1 5.1625 2.7246 -0.1263 39 1 3.4319 0.4239 -1.9183 40 1 6.5472 -2.5695 -3.9430 41 1 7.7629 -3.2333 -2.8197 42 1 8.0521 -0.8706 -4.7150 43 1 8.9861 -2.3822 -4.7071 44 1 13.0478 1.3651 -5.8954 45 1 12.7327 0.1061 -3.2887 46 1 12.2014 0.6675 -0.9529 47 1 9.9844 0.1463 -0.0370 48 1 7.5440 -0.1224 -0.6830 49 1 8.0170 -1.8279 -0.5030 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330040951.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:07 Heat of formation + Delta-G solvation = -59.275531 kcal Electronic energy + Delta-G solvation = -30455.543752 eV Core-core repulsion = 26381.438070 eV Total energy + Delta-G solvation = -4074.105681 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.00231 -40.36618 -39.42909 -38.10655 -37.13939 -35.54258 -35.33185 -33.58970 -32.06447 -31.88067 -30.60733 -27.89453 -27.35715 -26.84556 -25.62452 -24.44372 -23.88833 -22.40747 -22.08950 -21.55278 -20.26608 -19.03650 -18.44458 -18.16762 -17.45677 -17.19736 -17.00712 -16.62418 -16.14752 -15.99360 -15.84542 -15.58156 -15.25746 -15.18752 -15.06178 -14.76952 -14.42707 -14.24944 -14.10311 -13.85326 -13.55996 -13.37265 -13.30562 -13.13973 -13.06634 -13.03401 -12.87725 -12.76677 -12.47582 -12.32182 -12.31367 -12.14335 -11.97514 -11.84918 -11.47962 -11.13722 -10.85532 -10.39196 -10.22823 -9.80069 -9.40128 -9.28452 -9.02284 -8.74156 -6.24913 0.36749 0.99284 1.05872 1.31434 1.37625 1.47127 1.56897 2.13868 2.19189 2.47043 2.66074 3.18526 3.38540 3.64547 3.78528 3.98622 4.10715 4.13740 4.25763 4.32891 4.41909 4.48844 4.53656 4.59510 4.60149 4.63371 4.69422 4.72913 4.74328 4.80060 4.89240 4.98080 5.03469 5.08533 5.09144 5.23315 5.24671 5.27287 5.29790 5.43106 5.52764 5.78107 5.94475 6.00396 6.08454 6.15282 6.18455 6.27147 6.38337 6.42886 6.69954 6.71054 6.94848 6.97541 7.08170 8.25031 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019220 B = 0.002484 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.495213 B =11267.248136 C =11799.317364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.709 5.709 3 C 0.056 3.944 4 C 0.141 3.859 5 H 0.084 0.916 6 C -0.162 4.162 7 N -0.668 5.668 8 C 0.512 3.488 9 O -0.532 6.532 10 C 0.503 3.497 11 O -0.548 6.548 12 N -0.576 5.576 13 C 0.116 3.884 14 C -0.058 4.058 15 C -0.201 4.201 16 C 0.090 3.910 17 C -0.501 4.501 18 H 0.086 0.914 19 C 0.049 3.951 20 N -0.808 5.808 21 Si 0.966 3.034 22 H -0.262 1.262 23 H -0.268 1.268 24 H -0.256 1.256 25 C -0.213 4.213 26 C -0.100 4.100 27 C -0.243 4.243 28 C -0.073 4.073 29 C 0.143 3.857 30 H 0.031 0.969 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.345 0.655 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.042 0.958 39 H 0.417 0.583 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.040 0.960 43 H 0.079 0.921 44 H 0.290 0.710 45 H 0.084 0.916 46 H 0.109 0.891 47 H 0.115 0.885 48 H 0.127 0.873 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.576 0.291 9.716 20.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.340 5.340 3 C -0.073 4.073 4 C 0.037 3.963 5 H 0.103 0.897 6 C -0.221 4.221 7 N -0.320 5.320 8 C 0.293 3.707 9 O -0.411 6.411 10 C 0.287 3.713 11 O -0.426 6.426 12 N -0.308 5.308 13 C -0.006 4.006 14 C -0.096 4.096 15 C -0.202 4.202 16 C 0.087 3.913 17 C -0.529 4.529 18 H 0.104 0.896 19 C -0.169 4.169 20 N -0.432 5.432 21 Si 0.787 3.213 22 H -0.186 1.186 23 H -0.193 1.193 24 H -0.180 1.180 25 C -0.232 4.232 26 C -0.118 4.118 27 C -0.263 4.263 28 C -0.074 4.074 29 C 0.022 3.978 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.162 0.838 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.061 0.939 39 H 0.255 0.745 40 H 0.116 0.884 41 H 0.110 0.890 42 H 0.059 0.941 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.103 0.897 46 H 0.127 0.873 47 H 0.133 0.867 48 H 0.144 0.856 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -18.355 0.426 9.185 20.530 hybrid contribution 0.724 0.220 -0.232 0.792 sum -17.631 0.647 8.953 19.785 Atomic orbital electron populations 1.22196 0.86494 1.02412 1.00845 1.60341 1.08920 1.13967 1.50784 1.22288 0.91446 0.90495 1.03086 1.21266 0.94423 0.91448 0.89134 0.89747 1.22145 1.00951 0.95166 1.03812 1.45692 1.16483 1.48304 1.21506 1.19888 0.83217 0.80555 0.87030 1.90595 1.54320 1.62399 1.33761 1.20343 0.82381 0.81191 0.87425 1.90703 1.55444 1.59892 1.36595 1.48013 1.10336 1.43835 1.28593 1.21839 0.97387 0.91474 0.89870 1.20295 0.93919 0.98838 0.96500 1.19539 0.94884 1.11005 0.94792 1.17883 0.90403 0.89383 0.93604 1.19777 1.17071 1.18852 0.97164 0.89624 1.26726 0.96628 0.93945 0.99622 1.69960 1.25842 1.09475 1.37882 0.85446 0.77797 0.80175 0.77891 1.18647 1.19279 1.17989 1.20945 0.98886 1.09213 0.94174 1.20800 0.96739 0.99226 0.95082 1.20465 0.94802 1.11291 0.99735 1.19620 0.95229 0.98926 0.93600 1.21215 0.84713 1.03450 0.88428 0.95045 0.91560 0.91159 0.83779 0.91432 0.89533 0.91449 0.88994 0.93892 0.74533 0.88403 0.89021 0.94120 0.90306 0.89977 0.89731 0.87339 0.86727 0.85602 0.89583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.70 127.69 1.37 1.66 16 2 N -0.71 -9.29 6.58 -537.15 -3.53 -12.82 16 3 C 0.06 0.63 5.24 86.30 0.45 1.09 16 4 C 0.14 2.31 2.82 44.99 0.13 2.43 16 5 H 0.08 1.53 7.58 -2.39 -0.02 1.51 16 6 C -0.16 -2.55 9.48 71.98 0.68 -1.87 16 7 N -0.67 -14.75 4.79 -443.85 -2.13 -16.88 16 8 C 0.51 14.99 7.70 87.27 0.67 15.66 16 9 O -0.53 -17.00 12.94 -3.26 -0.04 -17.04 16 10 C 0.50 17.06 7.76 87.27 0.68 17.74 16 11 O -0.55 -19.85 16.01 -3.24 -0.05 -19.90 16 12 N -0.58 -20.40 2.94 -825.53 -2.42 -22.82 16 13 C 0.12 3.98 6.43 86.17 0.55 4.54 16 14 C -0.06 -2.42 5.25 29.74 0.16 -2.26 16 15 C -0.20 -9.66 5.82 -19.40 -0.11 -9.77 16 16 C 0.09 4.81 5.57 -21.19 -0.12 4.69 16 17 C -0.50 -26.50 8.29 23.46 0.19 -26.30 16 18 H 0.09 4.33 6.29 -2.91 -0.02 4.31 16 19 C 0.05 2.47 4.76 85.26 0.41 2.88 16 20 N -0.81 -42.55 11.84 21.83 0.26 -42.29 16 21 Si 0.97 37.89 29.66 68.60 2.03 39.92 16 22 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 23 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 24 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 25 C -0.21 -11.33 8.77 22.66 0.20 -11.13 16 26 C -0.10 -4.74 10.03 22.15 0.22 -4.51 16 27 C -0.24 -10.72 9.63 22.55 0.22 -10.50 16 28 C -0.07 -3.21 5.82 -19.84 -0.12 -3.33 16 29 C 0.14 5.21 5.55 85.65 0.48 5.69 16 30 H 0.03 0.25 8.14 -2.38 -0.02 0.23 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.34 4.39 8.82 -89.69 -0.79 3.60 16 34 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.42 8.98 8.09 -92.71 -0.75 8.23 16 40 H 0.10 3.17 7.11 -2.39 -0.02 3.15 16 41 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 42 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 43 H 0.08 3.21 6.41 -2.39 -0.02 3.20 16 44 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16 45 H 0.08 4.68 6.59 -2.91 -0.02 4.67 16 46 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 47 H 0.11 4.39 8.05 -2.91 -0.02 4.36 16 48 H 0.13 4.63 4.81 -12.36 -0.06 4.57 16 49 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 Total: -1.00 -64.14 395.36 -0.43 -64.56 By element: Atomic # 1 Polarization: 41.17 SS G_CDS: -0.60 Total: 40.57 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: 6.06 Total: -13.31 kcal Atomic # 7 Polarization: -86.99 SS G_CDS: -7.83 Total: -94.81 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -0.09 Total: -36.94 kcal Atomic # 14 Polarization: 37.89 SS G_CDS: 2.03 Total: 39.92 kcal Total: -64.14 -0.43 -64.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330040951.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.289 kcal (2) G-P(sol) polarization free energy of solvation -64.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds