Wall clock time and date at job start Wed Apr 1 2020 03:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47048 * 2 1 4 4 C 1.52995 * 109.47059 * 240.00339 * 2 1 3 5 5 N 1.46496 * 109.47388 * 64.99901 * 4 2 1 6 6 C 1.34778 * 120.00141 * 180.02562 * 5 4 2 7 7 O 1.21347 * 120.00143 * 359.97438 * 6 5 4 8 8 C 1.49452 * 119.99873 * 179.97438 * 6 5 4 9 9 O 1.21352 * 120.00368 * 353.61235 * 8 6 5 10 10 N 1.34782 * 119.99853 * 173.61290 * 8 6 5 11 11 C 1.46928 * 120.62748 * 351.27341 * 10 8 6 12 12 C 1.53194 * 108.88949 * 233.55808 * 11 10 8 13 13 C 1.53076 * 109.29729 * 305.57898 * 12 11 10 14 14 C 1.53040 * 109.65532 * 61.15721 * 13 12 11 15 15 H 1.08991 * 109.50418 * 58.64985 * 14 13 12 16 16 C 1.50700 * 109.49510 * 178.75142 * 14 13 12 17 17 H 1.07995 * 120.00544 * 34.99849 * 16 14 13 18 18 C 1.37883 * 119.99712 * 215.00205 * 16 14 13 19 19 N 1.31515 * 119.99984 * 174.90469 * 18 16 14 20 20 Si 1.86803 * 120.00037 * 354.90530 * 18 16 14 21 21 H 1.48497 * 109.46798 * 94.66334 * 20 18 16 22 22 H 1.48500 * 109.46944 * 214.66632 * 20 18 16 23 23 H 1.48499 * 109.47042 * 334.66587 * 20 18 16 24 24 C 1.46926 * 120.63165 * 171.29622 * 10 8 6 25 25 C 1.50696 * 109.47239 * 119.99960 * 2 1 3 26 26 C 1.38650 * 120.78846 * 59.71873 * 25 2 1 27 27 C 1.38208 * 119.16042 * 179.79774 * 26 25 2 28 28 N 1.31867 * 120.76458 * 0.48525 * 27 26 25 29 29 C 1.31869 * 121.72857 * 359.74514 * 28 27 26 30 30 C 1.38204 * 120.76001 * 0.02562 * 29 28 27 31 31 H 1.09006 * 109.47066 * 299.99625 * 1 2 3 32 32 H 1.08995 * 109.47236 * 59.99331 * 1 2 3 33 33 H 1.09001 * 109.47048 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47198 * 304.99837 * 4 2 1 35 35 H 1.09001 * 109.47554 * 185.00179 * 4 2 1 36 36 H 0.96998 * 120.00301 * 359.97438 * 5 4 2 37 37 H 1.08999 * 109.58763 * 353.41653 * 11 10 8 38 38 H 1.09002 * 109.58608 * 113.70289 * 11 10 8 39 39 H 1.08998 * 109.50040 * 65.39283 * 12 11 10 40 40 H 1.09001 * 109.49449 * 185.48666 * 12 11 10 41 41 H 1.08994 * 109.34804 * 301.13289 * 13 12 11 42 42 H 1.09004 * 109.44061 * 181.23460 * 13 12 11 43 43 H 0.97003 * 120.00101 * 179.97438 * 19 18 16 44 44 H 1.08996 * 109.58859 * 246.15909 * 24 10 8 45 45 H 1.09003 * 109.58551 * 6.44068 * 24 10 8 46 46 H 1.08000 * 120.41839 * 0.02562 * 26 25 2 47 47 H 1.08006 * 119.61575 * 180.20899 * 27 26 25 48 48 H 1.07996 * 119.62239 * 179.97438 * 29 28 27 49 49 H 1.08002 * 120.41521 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6524 0.0354 -2.4423 6 6 1.9955 -0.4135 -3.6660 7 8 2.6259 -1.4442 -3.7794 8 6 1.5996 0.3581 -4.8831 9 8 0.8723 1.3239 -4.7794 10 7 2.0505 -0.0187 -6.0961 11 6 3.0778 -1.0616 -6.2220 12 6 4.2360 -0.5177 -7.0645 13 6 3.6921 -0.0025 -8.3994 14 6 2.6993 1.1344 -8.1464 15 1 3.1964 1.9372 -7.6022 16 6 2.1894 1.6593 -9.4638 17 1 2.0399 0.9836 -10.2929 18 6 1.9139 3.0023 -9.6107 19 7 1.5653 3.4773 -10.7864 20 14 2.0358 4.1470 -8.1396 21 1 3.3787 4.7804 -8.1153 22 1 0.9937 5.1998 -8.2439 23 1 1.8320 3.3708 -6.8901 24 6 1.5244 0.6059 -7.3175 25 6 2.0324 -0.7104 1.2304 26 6 1.7027 -2.0358 1.4690 27 6 2.1854 -2.6556 2.6061 28 7 2.9424 -1.9985 3.4628 29 6 3.2721 -0.7362 3.2707 30 6 2.8303 -0.0524 2.1538 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6054 -1.7197 -1.2952 35 1 3.1263 -0.7994 -1.2057 36 1 1.1482 0.8591 -2.3518 37 1 3.4431 -1.3360 -5.2324 38 1 2.6510 -1.9379 -6.7100 39 1 4.7210 0.3000 -6.5315 40 1 4.9585 -1.3133 -7.2462 41 1 3.1879 -0.8154 -8.9218 42 1 4.5171 0.3650 -9.0097 43 1 1.3711 4.4221 -10.8897 44 1 0.9716 -0.1335 -7.8970 45 1 0.8628 1.4300 -7.0506 46 1 1.0797 -2.5781 0.7732 47 1 1.9359 -3.6889 2.7975 48 1 3.8938 -0.2307 3.9947 49 1 3.1034 0.9815 2.0022 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352355797.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:21 Heat of formation + Delta-G solvation = -32.669100 kcal Electronic energy + Delta-G solvation = -29956.933815 eV Core-core repulsion = 25883.981875 eV Total energy + Delta-G solvation = -4072.951940 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.95179 -40.56998 -38.71851 -37.20502 -36.90471 -34.14366 -33.21533 -31.89377 -31.67658 -30.85138 -30.52179 -27.60834 -25.85155 -25.18489 -24.48607 -23.84714 -22.48621 -21.87731 -21.04381 -20.25953 -19.03612 -17.63421 -17.37660 -16.88411 -16.64751 -16.56739 -16.09806 -15.94220 -15.63346 -15.02103 -14.93347 -14.35466 -14.25168 -14.11010 -14.02200 -13.83478 -13.67774 -13.56211 -13.22588 -13.16162 -12.63853 -12.50340 -12.39089 -12.23555 -12.13287 -11.87468 -11.71677 -11.41292 -11.16214 -10.76159 -10.66226 -10.49848 -10.11769 -10.03465 -9.90076 -9.73349 -9.59612 -9.56270 -9.47426 -9.23969 -8.82338 -8.66671 -8.15458 -6.14684 -4.15710 0.69816 0.76683 1.53091 2.42170 3.28143 3.34070 3.36659 3.38738 3.49011 3.63634 4.03203 4.05920 4.09311 4.38604 4.39882 4.47252 4.55572 4.64119 4.70907 4.78188 5.15851 5.16520 5.19295 5.19766 5.31890 5.35082 5.39955 5.47554 5.48811 5.54840 5.68084 5.69309 5.87333 5.91106 5.99888 6.16782 6.20010 6.25248 6.33724 6.45165 6.52851 6.62136 6.75264 6.80915 6.98214 7.23346 7.31458 7.54696 7.60498 7.69794 7.80451 8.21192 8.45155 8.90677 9.48409 10.97536 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020182 B = 0.002209 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.039745 B =12673.603114 C =13335.656493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.067 4.067 3 H 0.093 0.907 4 C 0.126 3.874 5 N -0.704 5.704 6 C 0.511 3.489 7 O -0.513 6.513 8 C 0.495 3.505 9 O -0.531 6.531 10 N -0.570 5.570 11 C 0.072 3.928 12 C -0.137 4.137 13 C -0.106 4.106 14 C 0.008 3.992 15 H 0.035 0.965 16 C -0.514 4.514 17 H 0.076 0.924 18 C 0.075 3.925 19 N -0.894 5.894 20 Si 0.867 3.133 21 H -0.279 1.279 22 H -0.287 1.287 23 H -0.252 1.252 24 C 0.106 3.894 25 C -0.030 4.030 26 C -0.165 4.165 27 C 0.100 3.900 28 N -0.489 5.489 29 C 0.100 3.900 30 C -0.167 4.167 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.413 0.587 37 H 0.128 0.872 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.265 0.735 44 H 0.068 0.932 45 H 0.085 0.915 46 H 0.136 0.864 47 H 0.156 0.844 48 H 0.156 0.844 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.153 -9.744 26.162 27.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.086 4.086 3 H 0.111 0.889 4 C 0.003 3.997 5 N -0.358 5.358 6 C 0.293 3.707 7 O -0.389 6.389 8 C 0.276 3.724 9 O -0.409 6.409 10 N -0.302 5.302 11 C -0.050 4.050 12 C -0.175 4.175 13 C -0.144 4.144 14 C -0.012 4.012 15 H 0.053 0.947 16 C -0.552 4.552 17 H 0.094 0.906 18 C -0.128 4.128 19 N -0.531 5.531 20 Si 0.694 3.306 21 H -0.205 1.205 22 H -0.213 1.213 23 H -0.176 1.176 24 C -0.014 4.014 25 C -0.039 4.039 26 C -0.185 4.185 27 C -0.056 4.056 28 N -0.198 5.198 29 C -0.057 4.057 30 C -0.187 4.187 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.250 0.750 37 H 0.145 0.855 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.103 0.897 46 H 0.154 0.846 47 H 0.174 0.826 48 H 0.173 0.827 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.459 -10.244 26.750 28.681 hybrid contribution -0.521 1.565 -0.164 1.657 sum 0.937 -8.679 26.586 27.982 Atomic orbital electron populations 1.21907 0.92837 1.02995 1.02841 1.20427 0.97291 0.99941 0.90910 0.88851 1.21461 1.00696 0.95359 0.82191 1.45794 1.56951 1.28181 1.04897 1.20576 0.79619 0.85597 0.84875 1.90496 1.38614 1.24337 1.85486 1.19892 0.82807 0.85074 0.84582 1.90746 1.37992 1.26374 1.85750 1.48454 1.38176 1.37894 1.05677 1.22747 0.88348 0.89263 1.04630 1.22027 0.97104 1.00438 0.97971 1.21597 0.99369 0.98743 0.94654 1.19456 0.91828 0.94175 0.95700 0.94682 1.20887 1.44708 0.93780 0.95808 0.90616 1.25087 0.94075 0.98145 0.95485 1.69905 1.46158 1.14384 1.22668 0.86979 0.77939 0.81027 0.84636 1.20521 1.21333 1.17578 1.22724 0.99345 0.97538 0.81777 1.20061 0.94781 0.93996 0.95050 1.22064 1.01850 0.95167 0.99441 1.22794 0.92829 1.00012 0.89976 1.67688 1.12290 1.09239 1.30560 1.22787 0.96728 0.90368 0.95804 1.22112 0.99226 1.01666 0.95671 0.91830 0.91362 0.91831 0.90523 0.90672 0.74989 0.85484 0.91688 0.92442 0.91550 0.92735 0.92161 0.92528 0.91416 0.89699 0.84607 0.82643 0.82675 0.84623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 8.88 37.16 0.33 -0.52 16 2 C -0.07 -0.41 2.63 -91.78 -0.24 -0.65 16 3 H 0.09 0.51 7.95 -51.93 -0.41 0.09 16 4 C 0.13 1.03 4.82 -4.05 -0.02 1.01 16 5 N -0.70 -7.47 5.28 -60.73 -0.32 -7.79 16 6 C 0.51 7.30 7.74 -11.58 -0.09 7.21 16 7 O -0.51 -7.76 13.18 5.50 0.07 -7.69 16 8 C 0.50 8.78 7.73 -11.58 -0.09 8.69 16 9 O -0.53 -10.62 15.93 5.50 0.09 -10.53 16 10 N -0.57 -10.54 2.97 -173.27 -0.52 -11.06 16 11 C 0.07 1.14 5.98 -3.71 -0.02 1.12 16 12 C -0.14 -2.19 6.09 -26.59 -0.16 -2.35 16 13 C -0.11 -2.03 5.14 -26.67 -0.14 -2.17 16 14 C 0.01 0.19 1.79 -91.65 -0.16 0.02 16 15 H 0.03 0.84 5.60 -51.93 -0.29 0.55 16 16 C -0.51 -13.91 8.86 -34.44 -0.31 -14.22 16 17 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 18 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 19 N -0.89 -26.87 13.96 55.43 0.77 -26.09 16 20 Si 0.87 21.64 26.62 -169.99 -4.53 17.11 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.25 -6.25 5.99 56.52 0.34 -5.91 16 24 C 0.11 2.27 5.53 -3.71 -0.02 2.25 16 25 C -0.03 -0.20 4.80 -104.32 -0.50 -0.70 16 26 C -0.17 -1.07 8.90 -39.44 -0.35 -1.42 16 27 C 0.10 0.73 11.18 -17.55 -0.20 0.53 16 28 N -0.49 -4.31 10.36 -13.25 -0.14 -4.45 16 29 C 0.10 0.71 11.18 -17.55 -0.20 0.52 16 30 C -0.17 -1.06 9.76 -39.44 -0.39 -1.44 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.42 7.18 -51.93 -0.37 0.05 16 33 H 0.06 0.35 7.47 -51.93 -0.39 -0.04 16 34 H 0.08 0.63 7.68 -51.93 -0.40 0.23 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.41 4.05 7.14 -40.82 -0.29 3.76 16 37 H 0.13 1.96 4.31 -54.82 -0.24 1.72 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 45 H 0.08 1.99 5.89 -51.93 -0.31 1.68 16 46 H 0.14 0.67 7.35 -52.49 -0.39 0.29 16 47 H 0.16 0.76 8.06 -52.48 -0.42 0.34 16 48 H 0.16 0.74 8.06 -52.49 -0.42 0.31 16 49 H 0.14 0.60 8.01 -52.49 -0.42 0.18 16 LS Contribution 391.18 15.07 5.89 5.89 Total: -1.00 -33.07 391.18 -8.67 -41.74 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -7.35 Total: 2.97 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -2.65 Total: -0.10 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: -0.20 Total: -49.39 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: 0.16 Total: -18.23 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.53 Total: 17.11 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.07 -8.67 -41.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352355797.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.074 kcal (2) G-P(sol) polarization free energy of solvation -33.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds