Wall clock time and date at job start Wed Apr 1 2020 03:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47048 * 2 1 4 4 C 1.52995 * 109.47059 * 240.00339 * 2 1 3 5 5 N 1.46496 * 109.47388 * 64.99901 * 4 2 1 6 6 C 1.34778 * 120.00141 * 180.02562 * 5 4 2 7 7 O 1.21347 * 120.00143 * 359.97438 * 6 5 4 8 8 C 1.49452 * 119.99873 * 179.97438 * 6 5 4 9 9 O 1.21352 * 120.00368 * 353.61235 * 8 6 5 10 10 N 1.34782 * 119.99853 * 173.61290 * 8 6 5 11 11 C 1.46928 * 120.62748 * 351.27341 * 10 8 6 12 12 C 1.53194 * 108.88949 * 233.55808 * 11 10 8 13 13 C 1.53076 * 109.29729 * 305.57898 * 12 11 10 14 14 C 1.53040 * 109.65532 * 61.15721 * 13 12 11 15 15 H 1.08991 * 109.50418 * 58.64985 * 14 13 12 16 16 C 1.50700 * 109.49510 * 178.75142 * 14 13 12 17 17 H 1.07995 * 120.00544 * 34.99849 * 16 14 13 18 18 C 1.37883 * 119.99712 * 215.00205 * 16 14 13 19 19 N 1.31515 * 119.99984 * 174.90469 * 18 16 14 20 20 Si 1.86803 * 120.00037 * 354.90530 * 18 16 14 21 21 H 1.48497 * 109.46798 * 94.66334 * 20 18 16 22 22 H 1.48500 * 109.46944 * 214.66632 * 20 18 16 23 23 H 1.48499 * 109.47042 * 334.66587 * 20 18 16 24 24 C 1.46926 * 120.63165 * 171.29622 * 10 8 6 25 25 C 1.50696 * 109.47239 * 119.99960 * 2 1 3 26 26 C 1.38650 * 120.78846 * 59.71873 * 25 2 1 27 27 C 1.38208 * 119.16042 * 179.79774 * 26 25 2 28 28 N 1.31867 * 120.76458 * 0.48525 * 27 26 25 29 29 C 1.31869 * 121.72857 * 359.74514 * 28 27 26 30 30 C 1.38204 * 120.76001 * 0.02562 * 29 28 27 31 31 H 1.09006 * 109.47066 * 299.99625 * 1 2 3 32 32 H 1.08995 * 109.47236 * 59.99331 * 1 2 3 33 33 H 1.09001 * 109.47048 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47198 * 304.99837 * 4 2 1 35 35 H 1.09001 * 109.47554 * 185.00179 * 4 2 1 36 36 H 0.96998 * 120.00301 * 359.97438 * 5 4 2 37 37 H 1.08999 * 109.58763 * 353.41653 * 11 10 8 38 38 H 1.09002 * 109.58608 * 113.70289 * 11 10 8 39 39 H 1.08998 * 109.50040 * 65.39283 * 12 11 10 40 40 H 1.09001 * 109.49449 * 185.48666 * 12 11 10 41 41 H 1.08994 * 109.34804 * 301.13289 * 13 12 11 42 42 H 1.09004 * 109.44061 * 181.23460 * 13 12 11 43 43 H 0.97003 * 120.00101 * 179.97438 * 19 18 16 44 44 H 1.08996 * 109.58859 * 246.15909 * 24 10 8 45 45 H 1.09003 * 109.58551 * 6.44068 * 24 10 8 46 46 H 1.08000 * 120.41839 * 0.02562 * 26 25 2 47 47 H 1.08006 * 119.61575 * 180.20899 * 27 26 25 48 48 H 1.07996 * 119.62239 * 179.97438 * 29 28 27 49 49 H 1.08002 * 120.41521 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6524 0.0354 -2.4423 6 6 1.9955 -0.4135 -3.6660 7 8 2.6259 -1.4442 -3.7794 8 6 1.5996 0.3581 -4.8831 9 8 0.8723 1.3239 -4.7794 10 7 2.0505 -0.0187 -6.0961 11 6 3.0778 -1.0616 -6.2220 12 6 4.2360 -0.5177 -7.0645 13 6 3.6921 -0.0025 -8.3994 14 6 2.6993 1.1344 -8.1464 15 1 3.1964 1.9372 -7.6022 16 6 2.1894 1.6593 -9.4638 17 1 2.0399 0.9836 -10.2929 18 6 1.9139 3.0023 -9.6107 19 7 1.5653 3.4773 -10.7864 20 14 2.0358 4.1470 -8.1396 21 1 3.3787 4.7804 -8.1153 22 1 0.9937 5.1998 -8.2439 23 1 1.8320 3.3708 -6.8901 24 6 1.5244 0.6059 -7.3175 25 6 2.0324 -0.7104 1.2304 26 6 1.7027 -2.0358 1.4690 27 6 2.1854 -2.6556 2.6061 28 7 2.9424 -1.9985 3.4628 29 6 3.2721 -0.7362 3.2707 30 6 2.8303 -0.0524 2.1538 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6054 -1.7197 -1.2952 35 1 3.1263 -0.7994 -1.2057 36 1 1.1482 0.8591 -2.3518 37 1 3.4431 -1.3360 -5.2324 38 1 2.6510 -1.9379 -6.7100 39 1 4.7210 0.3000 -6.5315 40 1 4.9585 -1.3133 -7.2462 41 1 3.1879 -0.8154 -8.9218 42 1 4.5171 0.3650 -9.0097 43 1 1.3711 4.4221 -10.8897 44 1 0.9716 -0.1335 -7.8970 45 1 0.8628 1.4300 -7.0506 46 1 1.0797 -2.5781 0.7732 47 1 1.9359 -3.6889 2.7975 48 1 3.8938 -0.2307 3.9947 49 1 3.1034 0.9815 2.0022 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352355797.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:20 Heat of formation + Delta-G solvation = -54.646519 kcal Electronic energy + Delta-G solvation = -29957.886828 eV Core-core repulsion = 25883.981875 eV Total energy + Delta-G solvation = -4073.904952 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.05095 -41.21979 -39.95139 -38.62287 -37.72400 -35.35950 -34.71034 -33.55415 -32.20624 -32.14070 -31.41040 -28.50536 -27.26774 -26.75390 -25.18982 -24.41069 -23.60027 -23.43740 -21.76112 -21.41943 -20.52181 -19.19455 -18.56352 -18.18580 -17.67884 -17.27811 -17.11577 -16.77931 -16.42061 -16.28166 -16.03602 -15.84013 -15.49805 -15.06509 -14.97059 -14.88773 -14.70272 -14.46984 -14.40082 -14.29918 -14.12955 -13.82392 -13.74067 -13.20508 -13.04428 -12.90429 -12.61426 -12.57762 -12.40222 -12.33757 -12.03515 -11.88460 -11.69527 -11.64636 -11.26544 -11.14682 -10.79058 -10.57902 -10.44115 -10.37522 -10.12745 -10.05627 -9.68829 -8.34572 -6.37660 0.23161 0.26780 0.29356 1.25054 1.29099 1.34861 1.47874 2.06806 2.30019 2.45969 2.87599 3.02779 3.23351 3.54224 3.57930 3.64927 3.87995 4.02989 4.08856 4.14395 4.19754 4.21696 4.25346 4.33183 4.45042 4.53214 4.61578 4.64458 4.69146 4.75466 4.76194 4.82882 4.87434 4.92377 4.96105 5.00420 5.05848 5.09051 5.19480 5.24880 5.26765 5.36802 5.44286 5.55123 5.60723 5.65935 5.80234 5.94950 6.25447 6.31793 6.64516 6.72224 6.88682 7.06256 7.28919 8.81543 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020182 B = 0.002209 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.039745 B =12673.603114 C =13335.656493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.056 4.056 3 H 0.104 0.896 4 C 0.127 3.873 5 N -0.685 5.685 6 C 0.520 3.480 7 O -0.520 6.520 8 C 0.490 3.510 9 O -0.558 6.558 10 N -0.577 5.577 11 C 0.073 3.927 12 C -0.128 4.128 13 C -0.103 4.103 14 C 0.007 3.993 15 H 0.025 0.975 16 C -0.510 4.510 17 H 0.043 0.957 18 C 0.021 3.979 19 N -0.941 5.941 20 Si 0.930 3.070 21 H -0.270 1.270 22 H -0.287 1.287 23 H -0.252 1.252 24 C 0.117 3.883 25 C -0.036 4.036 26 C -0.167 4.167 27 C 0.087 3.913 28 N -0.519 5.519 29 C 0.086 3.914 30 C -0.168 4.168 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.419 0.581 37 H 0.141 0.859 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.101 0.899 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.266 0.734 44 H 0.069 0.931 45 H 0.060 0.940 46 H 0.150 0.850 47 H 0.171 0.829 48 H 0.173 0.827 49 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.987 -10.568 28.797 30.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.074 4.074 3 H 0.122 0.878 4 C 0.004 3.996 5 N -0.338 5.338 6 C 0.301 3.699 7 O -0.398 6.398 8 C 0.273 3.727 9 O -0.438 6.438 10 N -0.309 5.309 11 C -0.048 4.048 12 C -0.166 4.166 13 C -0.141 4.141 14 C -0.013 4.013 15 H 0.043 0.957 16 C -0.549 4.549 17 H 0.061 0.939 18 C -0.177 4.177 19 N -0.580 5.580 20 Si 0.755 3.245 21 H -0.196 1.196 22 H -0.213 1.213 23 H -0.175 1.175 24 C -0.005 4.005 25 C -0.045 4.045 26 C -0.187 4.187 27 C -0.070 4.070 28 N -0.229 5.229 29 C -0.070 4.070 30 C -0.188 4.188 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.257 0.743 37 H 0.158 0.842 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.119 0.881 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.078 0.922 46 H 0.168 0.832 47 H 0.188 0.812 48 H 0.190 0.810 49 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.305 -11.085 29.431 31.534 hybrid contribution -0.804 1.748 -0.966 2.153 sum 1.501 -9.337 28.465 29.995 Atomic orbital electron populations 1.21909 0.92523 1.03230 1.02888 1.20335 0.97397 1.00133 0.89570 0.87787 1.21628 1.00726 0.95516 0.81688 1.45753 1.55549 1.28151 1.04391 1.19817 0.80195 0.85210 0.84726 1.90483 1.39439 1.24474 1.85448 1.20528 0.82019 0.84804 0.85399 1.90727 1.39047 1.27687 1.86327 1.48430 1.38953 1.38378 1.05131 1.22945 0.87572 0.88740 1.05510 1.21982 0.97670 1.01409 0.95545 1.21503 0.98265 0.97449 0.96863 1.19412 0.93092 0.95282 0.93493 0.95689 1.21154 1.43505 0.93282 0.96911 0.93884 1.25825 0.94306 0.99892 0.97719 1.70026 1.48451 1.14864 1.24678 0.85986 0.78121 0.78993 0.81385 1.19563 1.21349 1.17543 1.22191 0.98079 0.97064 0.83147 1.20158 0.94960 0.94150 0.95243 1.22244 1.01719 0.95334 0.99404 1.23124 0.92810 1.00863 0.90157 1.67686 1.13312 1.10253 1.31601 1.23148 0.97059 0.90159 0.96623 1.22343 0.98662 1.02548 0.95202 0.91317 0.91777 0.91562 0.90048 0.90778 0.74343 0.84191 0.90524 0.92627 0.88077 0.92489 0.92764 0.92440 0.91271 0.92158 0.83220 0.81163 0.81037 0.82713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.88 71.98 0.64 -0.68 16 2 C -0.06 -0.52 2.63 -11.54 -0.03 -0.55 16 3 H 0.10 0.78 7.95 -2.39 -0.02 0.76 16 4 C 0.13 1.70 4.82 86.38 0.42 2.11 16 5 N -0.69 -12.72 5.28 -464.43 -2.45 -15.17 16 6 C 0.52 13.55 7.74 87.27 0.68 14.23 16 7 O -0.52 -14.19 13.18 -3.24 -0.04 -14.24 16 8 C 0.49 16.60 7.73 87.27 0.67 17.27 16 9 O -0.56 -21.83 15.93 -3.25 -0.05 -21.88 16 10 N -0.58 -20.47 2.97 -820.46 -2.44 -22.91 16 11 C 0.07 2.11 5.98 86.36 0.52 2.63 16 12 C -0.13 -3.72 6.09 30.68 0.19 -3.53 16 13 C -0.10 -3.84 5.14 30.63 0.16 -3.68 16 14 C 0.01 0.31 1.79 -11.46 -0.02 0.29 16 15 H 0.02 1.18 5.60 -2.39 -0.01 1.17 16 16 C -0.51 -28.31 8.86 25.60 0.23 -28.09 16 17 H 0.04 2.61 8.06 -2.91 -0.02 2.59 16 18 C 0.02 1.21 5.47 84.66 0.46 1.67 16 19 N -0.94 -58.16 13.96 21.45 0.30 -57.86 16 20 Si 0.93 45.57 26.62 68.60 1.83 47.40 16 21 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 22 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 23 H -0.25 -12.20 5.99 99.48 0.60 -11.61 16 24 C 0.12 4.96 5.53 86.36 0.48 5.44 16 25 C -0.04 -0.39 4.80 -19.67 -0.09 -0.48 16 26 C -0.17 -1.82 8.90 22.36 0.20 -1.62 16 27 C 0.09 1.13 11.18 84.68 0.95 2.08 16 28 N -0.52 -8.59 10.36 -195.84 -2.03 -10.62 16 29 C 0.09 1.10 11.18 84.68 0.95 2.05 16 30 C -0.17 -1.75 9.76 22.36 0.22 -1.53 16 31 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.06 0.64 7.18 -2.39 -0.02 0.62 16 33 H 0.07 0.56 7.47 -2.39 -0.02 0.54 16 34 H 0.08 1.08 7.68 -2.39 -0.02 1.06 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.42 7.16 7.14 -92.71 -0.66 6.49 16 37 H 0.14 3.83 4.31 -48.17 -0.21 3.63 16 38 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 44 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 45 H 0.06 2.84 5.89 -2.39 -0.01 2.83 16 46 H 0.15 1.12 7.35 -2.91 -0.02 1.10 16 47 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 48 H 0.17 1.37 8.06 -2.91 -0.02 1.34 16 49 H 0.16 0.92 8.01 -2.91 -0.02 0.90 16 Total: -1.00 -72.58 391.18 1.71 -70.87 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.00 Total: 16.79 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 6.60 Total: 7.61 kcal Atomic # 7 Polarization: -99.94 SS G_CDS: -6.62 Total: -106.56 kcal Atomic # 8 Polarization: -36.02 SS G_CDS: -0.09 Total: -36.11 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.83 Total: 47.40 kcal Total: -72.58 1.71 -70.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352355797.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.223 kcal (2) G-P(sol) polarization free energy of solvation -72.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds