Wall clock time and date at job start Wed Apr 1 2020 03:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47153 * 2 1 4 4 C 1.47196 * 109.47542 * 239.99876 * 2 1 3 5 5 N 2.60794 * 109.47436 * 239.99674 * 2 1 3 6 6 C 1.50703 * 109.46705 * 119.99642 * 2 1 3 7 7 O 1.21286 * 119.99531 * 106.22843 * 6 2 1 8 8 N 1.34771 * 120.00358 * 286.21817 * 6 2 1 9 9 C 1.46500 * 119.99879 * 5.11821 * 8 6 2 10 10 C 1.46497 * 120.00293 * 185.11138 * 8 6 2 11 11 C 1.52995 * 109.47350 * 270.00472 * 10 8 6 12 12 N 1.46900 * 109.47273 * 179.97438 * 11 10 8 13 13 C 1.46906 * 110.99936 * 66.04712 * 12 11 10 14 14 C 1.46904 * 111.00391 * 189.99689 * 12 11 10 15 15 C 1.50699 * 109.47331 * 170.00182 * 14 12 11 16 16 C 1.38306 * 119.92748 * 269.73138 * 15 14 12 17 17 C 1.38104 * 120.06487 * 179.72741 * 16 15 14 18 18 C 1.38883 * 119.92861 * 0.56300 * 17 16 15 19 19 O 1.35744 * 120.06690 * 179.68243 * 18 17 16 20 20 C 1.34830 * 116.99969 * 185.77243 * 19 18 17 21 21 H 1.07994 * 120.00025 * 5.39565 * 20 19 18 22 22 C 1.38661 * 120.00081 * 185.38990 * 20 19 18 23 23 N 1.31555 * 120.00069 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00029 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47118 * 59.99672 * 24 22 20 26 26 H 1.48499 * 109.47006 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46932 * 300.00071 * 24 22 20 28 28 C 1.38882 * 119.86105 * 359.71179 * 18 17 16 29 29 C 1.38096 * 119.93317 * 359.97438 * 28 18 17 30 30 H 1.09005 * 109.47110 * 170.16258 * 1 2 3 31 31 H 1.09002 * 109.47432 * 290.15784 * 1 2 3 32 32 H 1.08995 * 109.47198 * 50.16700 * 1 2 3 33 33 H 1.09006 * 109.47118 * 267.09781 * 9 8 6 34 34 H 1.08994 * 109.47343 * 27.09600 * 9 8 6 35 35 H 1.09002 * 109.47471 * 147.10123 * 9 8 6 36 36 H 1.09003 * 109.46804 * 30.00303 * 10 8 6 37 37 H 1.08999 * 109.47335 * 150.00221 * 10 8 6 38 38 H 1.09003 * 109.47029 * 299.99693 * 11 10 8 39 39 H 1.08997 * 109.47305 * 60.00106 * 11 10 8 40 40 H 1.09004 * 109.47090 * 60.00274 * 13 12 11 41 41 H 1.08997 * 109.47263 * 179.97438 * 13 12 11 42 42 H 1.09003 * 109.47059 * 299.99954 * 13 12 11 43 43 H 1.08996 * 109.47076 * 290.00833 * 14 12 11 44 44 H 1.09003 * 109.46732 * 50.00197 * 14 12 11 45 45 H 1.07999 * 119.96704 * 359.97438 * 16 15 14 46 46 H 1.07993 * 120.03358 * 180.27655 * 17 16 15 47 47 H 0.96991 * 120.00659 * 179.97438 * 23 22 20 48 48 H 1.07999 * 120.02922 * 179.97438 * 28 18 17 49 49 H 1.08001 * 119.96604 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 -1.2018 5 7 2.3994 -1.2295 -2.1293 6 6 2.0322 -0.7104 1.2306 7 8 2.5111 -1.8207 1.1367 8 7 1.9495 -0.1118 2.4352 9 6 1.2709 1.1800 2.5662 10 6 2.5379 -0.7529 3.6137 11 6 1.4961 -1.6564 4.2764 12 7 2.0864 -2.2997 5.4578 13 6 2.3999 -1.3084 6.4956 14 6 1.2027 -3.3495 5.9824 15 6 1.9364 -4.1467 7.0299 16 6 2.6590 -5.2675 6.6633 17 6 3.3371 -5.9970 7.6201 18 6 3.2832 -5.6107 8.9530 19 8 3.9433 -6.3293 9.8967 20 6 3.7529 -5.9718 11.1827 21 1 3.0335 -5.2050 11.4291 22 6 4.4808 -6.5887 12.1888 23 7 5.3568 -7.5232 11.8887 24 14 4.2165 -6.0939 13.9706 25 1 2.8017 -6.3407 14.3483 26 1 5.1090 -6.8965 14.8448 27 1 4.5282 -4.6513 14.1351 28 6 2.5520 -4.4879 9.3185 29 6 1.8814 -3.7589 8.3562 30 1 -0.3633 -1.0126 -0.1756 31 1 -0.3634 0.3541 0.9647 32 1 -0.3633 0.6582 -0.7891 33 1 1.9999 1.9847 2.4701 34 1 0.5184 1.2761 1.7836 35 1 0.7898 1.2404 3.5424 36 1 3.3975 -1.3508 3.3108 37 1 2.8584 0.0118 4.3213 38 1 0.6366 -1.0585 4.5792 39 1 1.1757 -2.4211 3.5688 40 1 1.4861 -0.7961 6.7966 41 1 2.8351 -1.8115 7.3590 42 1 3.1107 -0.5821 6.1014 43 1 0.3190 -2.8918 6.4269 44 1 0.9000 -4.0094 5.1694 45 1 2.6964 -5.5704 5.6273 46 1 3.9048 -6.8695 7.3327 47 1 5.8662 -7.9545 12.5924 48 1 2.5078 -4.1853 10.3543 49 1 1.3130 -2.8855 8.6398 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001379034689.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:06 Heat of formation + Delta-G solvation = 10.602047 kcal Electronic energy + Delta-G solvation = -28902.328391 eV Core-core repulsion = 24831.252829 eV Total energy + Delta-G solvation = -4071.075562 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.79241 -39.19290 -37.96702 -37.04717 -36.38549 -35.67681 -33.87787 -32.32540 -30.77666 -30.15597 -28.96842 -27.41555 -26.87693 -25.74595 -25.29342 -23.96582 -21.92991 -21.65996 -20.32968 -20.18487 -18.11910 -17.96056 -17.83763 -16.92135 -16.47886 -16.16437 -15.50955 -15.25864 -15.09406 -14.83140 -14.53371 -14.40499 -14.16260 -13.78346 -13.63614 -13.53488 -13.48733 -13.44910 -13.21202 -13.16243 -12.99345 -12.65924 -12.65660 -12.36505 -12.31552 -12.06398 -11.97266 -11.78463 -11.63262 -11.42379 -11.26002 -11.07355 -10.73623 -10.64302 -10.57231 -10.41057 -10.25816 -9.34646 -9.20690 -8.82040 -8.30868 -8.12374 -7.15315 -6.43836 -4.02734 1.96098 2.00613 2.24847 2.30686 2.37422 2.68092 3.13051 3.13715 3.17000 3.29886 3.84561 3.97209 4.05968 4.20980 4.33691 4.43648 4.64033 4.68684 4.78999 4.84445 4.95681 4.98613 5.09859 5.11911 5.16326 5.24640 5.29787 5.35975 5.43229 5.49686 5.52907 5.61886 5.71082 5.80991 5.81822 5.93390 6.00809 6.08689 6.24720 6.45686 6.73624 6.74728 6.92207 7.00772 7.06321 7.12223 7.14315 7.29198 7.42424 7.46493 7.59166 7.85896 8.00927 9.01512 9.72685 10.74158 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025715 B = 0.001677 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.595397 B =16691.689955 C =17254.609321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.011 4.011 3 H 0.137 0.863 4 C 0.219 3.781 5 N -0.408 5.408 6 C 0.520 3.480 7 O -0.515 6.515 8 N -0.610 5.610 9 C 0.059 3.941 10 C 0.118 3.882 11 C 0.043 3.957 12 N -0.533 5.533 13 C 0.019 3.981 14 C 0.116 3.884 15 C -0.180 4.180 16 C -0.052 4.052 17 C -0.194 4.194 18 C 0.156 3.844 19 O -0.178 6.178 20 C -0.392 4.392 21 H 0.090 0.910 22 C 0.039 3.961 23 N -0.862 5.862 24 Si 0.940 3.060 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.270 1.270 28 C -0.235 4.235 29 C -0.065 4.065 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.031 0.969 39 H 0.077 0.923 40 H 0.020 0.980 41 H 0.081 0.919 42 H 0.063 0.937 43 H 0.032 0.968 44 H 0.073 0.927 45 H 0.112 0.888 46 H 0.116 0.884 47 H 0.270 0.730 48 H 0.125 0.875 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.457 22.324 -17.429 30.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.035 4.035 3 H 0.155 0.845 4 C -0.101 4.101 5 N -0.083 5.083 6 C 0.305 3.695 7 O -0.389 6.389 8 N -0.344 5.344 9 C -0.084 4.084 10 C -0.004 4.004 11 C -0.087 4.087 12 N -0.257 5.257 13 C -0.129 4.129 14 C -0.010 4.010 15 C -0.181 4.181 16 C -0.070 4.070 17 C -0.213 4.213 18 C 0.102 3.898 19 O -0.081 6.081 20 C -0.468 4.468 21 H 0.108 0.892 22 C -0.165 4.165 23 N -0.497 5.497 24 Si 0.765 3.235 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.195 1.195 28 C -0.254 4.254 29 C -0.084 4.084 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.114 0.886 37 H 0.100 0.900 38 H 0.049 0.951 39 H 0.096 0.904 40 H 0.039 0.961 41 H 0.100 0.900 42 H 0.081 0.919 43 H 0.050 0.950 44 H 0.091 0.909 45 H 0.130 0.870 46 H 0.134 0.866 47 H 0.080 0.920 48 H 0.143 0.857 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.854 20.337 -18.904 29.812 hybrid contribution -1.009 1.044 1.698 2.234 sum -11.863 21.381 -17.206 29.898 Atomic orbital electron populations 1.21986 0.89507 1.04838 1.04573 1.18841 0.98912 1.00032 0.85733 0.84519 1.28055 0.94032 0.94002 0.94000 1.81221 1.07512 1.07578 1.12012 1.20013 0.79360 0.86195 0.83944 1.90839 1.43793 1.18657 1.85640 1.47731 1.57241 1.21873 1.07594 1.22207 0.97715 0.84323 1.04111 1.21556 0.96847 0.96549 0.85454 1.22410 0.95370 0.97492 0.93396 1.61944 1.45126 1.12449 1.06196 1.22518 0.99477 0.94829 0.96107 1.20787 0.92078 0.92151 0.96026 1.19033 1.06631 0.99253 0.93167 1.20475 0.94956 0.93916 0.97687 1.20221 1.06879 1.03515 0.90724 1.19416 0.90767 0.89860 0.89771 1.83995 1.59064 1.50025 1.15037 1.21255 1.23298 1.23167 0.79070 0.89213 1.25287 0.95377 0.95954 0.99913 1.70024 1.22686 1.23071 1.33923 0.85793 0.78589 0.78729 0.80378 1.19540 1.20284 1.19547 1.21110 1.05303 0.98885 1.00128 1.20571 0.97751 0.97760 0.92337 0.90680 0.89288 0.89915 0.91838 0.89726 0.90473 0.88646 0.90010 0.95122 0.90445 0.96124 0.89999 0.91864 0.95020 0.90870 0.87043 0.86583 0.91973 0.85699 0.87997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.30 8.74 37.16 0.32 0.02 16 2 C -0.01 -0.05 2.29 -94.56 -0.22 -0.26 16 3 H 0.14 0.10 7.72 -51.93 -0.40 -0.30 16 4 C 0.22 1.96 13.90 -20.76 -0.29 1.67 16 5 N -0.41 -5.01 18.54 42.15 0.78 -4.23 16 6 C 0.52 4.16 6.89 -10.99 -0.08 4.08 16 7 O -0.52 -6.88 15.73 5.55 0.09 -6.79 16 8 N -0.61 -3.61 2.87 -181.57 -0.52 -4.14 16 9 C 0.06 0.09 9.86 59.85 0.59 0.68 16 10 C 0.12 0.97 5.31 -4.05 -0.02 0.95 16 11 C 0.04 0.41 5.28 -3.83 -0.02 0.38 16 12 N -0.53 -6.50 4.75 -244.36 -1.16 -7.66 16 13 C 0.02 0.21 8.97 60.07 0.54 0.75 16 14 C 0.12 1.55 5.12 -4.97 -0.03 1.53 16 15 C -0.18 -3.02 4.89 -104.58 -0.51 -3.53 16 16 C -0.05 -0.94 9.69 -39.61 -0.38 -1.33 16 17 C -0.19 -4.17 9.99 -39.39 -0.39 -4.57 16 18 C 0.16 3.78 6.65 -39.10 -0.26 3.52 16 19 O -0.18 -5.11 9.76 0.07 0.00 -5.11 16 20 C -0.39 -10.94 9.44 30.89 0.29 -10.65 16 21 H 0.09 2.31 5.29 -52.49 -0.28 2.03 16 22 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 23 N -0.86 -25.37 13.67 55.48 0.76 -24.61 16 24 Si 0.94 20.45 29.55 -169.99 -5.02 15.42 16 25 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 26 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 27 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 28 C -0.23 -5.04 9.13 -39.39 -0.36 -5.40 16 29 C -0.07 -1.16 7.89 -39.61 -0.31 -1.47 16 30 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 31 H 0.09 0.02 5.50 -51.93 -0.29 -0.26 16 32 H 0.08 0.02 8.14 -51.93 -0.42 -0.40 16 33 H 0.06 0.03 8.14 -51.93 -0.42 -0.39 16 34 H 0.08 -0.05 4.17 -51.93 -0.22 -0.26 16 35 H 0.08 0.10 8.09 -51.93 -0.42 -0.32 16 36 H 0.10 1.05 7.50 -51.93 -0.39 0.66 16 37 H 0.08 0.54 6.48 -51.93 -0.34 0.20 16 38 H 0.03 0.25 8.12 -51.93 -0.42 -0.17 16 39 H 0.08 0.86 7.93 -51.93 -0.41 0.44 16 40 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.08 1.11 5.88 -51.93 -0.31 0.80 16 42 H 0.06 0.59 6.47 -51.93 -0.34 0.25 16 43 H 0.03 0.39 8.06 -51.93 -0.42 -0.03 16 44 H 0.07 0.94 7.87 -51.93 -0.41 0.54 16 45 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 46 H 0.12 2.44 8.06 -52.49 -0.42 2.01 16 47 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 48 H 0.13 2.69 5.71 -52.49 -0.30 2.39 16 49 H 0.10 1.54 7.98 -52.49 -0.42 1.12 16 LS Contribution 405.47 15.07 6.11 6.11 Total: -1.00 -36.22 405.47 -7.21 -43.42 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -7.02 Total: 0.23 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -1.22 Total: -12.66 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: -0.14 Total: -40.63 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.09 Total: -11.90 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.22 -7.21 -43.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001379034689.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.026 kcal (2) G-P(sol) polarization free energy of solvation -36.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds