Wall clock time and date at job start Wed Apr 1 2020 03:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.46525 * 2 1 4 4 O 1.42900 * 109.47289 * 240.00408 * 2 1 3 5 5 C 1.42898 * 114.00080 * 89.99516 * 4 2 1 6 6 C 1.50701 * 109.46882 * 180.02562 * 5 4 2 7 7 C 1.38651 * 120.78926 * 269.71648 * 6 5 4 8 8 C 1.38206 * 119.16120 * 179.79953 * 7 6 5 9 9 N 1.31869 * 120.76163 * 0.48845 * 8 7 6 10 10 C 1.31862 * 121.73033 * 359.74391 * 9 8 7 11 11 C 1.38204 * 120.76348 * 0.02562 * 10 9 8 12 12 C 1.50697 * 109.47356 * 119.99787 * 2 1 3 13 13 O 1.21281 * 119.99832 * 103.26234 * 12 2 1 14 14 N 1.34780 * 120.00480 * 283.26290 * 12 2 1 15 15 C 1.46664 * 125.34192 * 184.64529 * 14 12 2 16 16 C 1.53722 * 107.94258 * 180.54746 * 15 14 12 17 17 H 1.09002 * 112.55986 * 139.72629 * 16 15 14 18 18 C 1.53694 * 109.34117 * 266.25288 * 16 15 14 19 19 N 1.46641 * 108.00754 * 127.55688 * 18 16 15 20 20 C 1.36937 * 125.32925 * 180.81491 * 19 18 16 21 21 H 1.08000 * 120.00120 * 180.02562 * 20 19 18 22 22 C 1.38811 * 119.99764 * 0.02864 * 20 19 18 23 23 N 1.31616 * 120.00413 * 359.97438 * 22 20 19 24 24 Si 1.86809 * 119.99820 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47053 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47016 * 119.99892 * 24 22 20 27 27 H 1.48502 * 109.47176 * 239.99985 * 24 22 20 28 28 C 1.46742 * 109.34240 * 0.83698 * 19 18 16 29 29 C 1.53929 * 106.72218 * 341.66172 * 28 19 18 30 30 H 1.08993 * 113.01692 * 150.83277 * 29 28 19 31 31 C 1.46777 * 125.33420 * 4.34672 * 14 12 2 32 32 H 1.09000 * 109.47233 * 54.81495 * 1 2 3 33 33 H 1.08993 * 109.46962 * 174.82010 * 1 2 3 34 34 H 1.08998 * 109.46898 * 294.81707 * 1 2 3 35 35 H 1.09000 * 109.47183 * 300.00177 * 5 4 2 36 36 H 1.08997 * 109.47046 * 60.00088 * 5 4 2 37 37 H 1.08000 * 120.41613 * 0.02562 * 7 6 5 38 38 H 1.07999 * 119.61263 * 180.25291 * 8 7 6 39 39 H 1.07997 * 119.62357 * 179.97438 * 10 9 8 40 40 H 1.08005 * 120.41969 * 179.97438 * 11 10 9 41 41 H 1.08995 * 109.77025 * 300.17375 * 15 14 12 42 42 H 1.09008 * 109.76720 * 60.92914 * 15 14 12 43 43 H 1.08996 * 109.76227 * 247.20097 * 18 16 15 44 44 H 1.09003 * 109.75961 * 7.92149 * 18 16 15 45 45 H 0.97001 * 120.00261 * 179.97438 * 23 22 20 46 46 H 1.08998 * 110.01148 * 222.34098 * 28 19 18 47 47 H 1.09006 * 110.00898 * 100.96997 * 28 19 18 48 48 H 1.09003 * 110.02694 * 280.77550 * 31 14 12 49 49 H 1.09001 * 110.03055 * 42.18562 * 31 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0064 -0.6735 -1.1668 5 6 2.2001 0.1831 -2.2941 6 6 2.7003 -0.6283 -3.4614 7 6 4.0591 -0.8073 -3.6709 8 6 4.4806 -1.5613 -4.7498 9 7 3.6075 -2.0986 -5.5793 10 6 2.3084 -1.9453 -5.4138 11 6 1.8128 -1.2084 -4.3548 12 6 2.0324 -0.7103 1.2304 13 8 2.4617 -1.8414 1.1448 14 7 2.0047 -0.0888 2.4261 15 6 2.5493 -0.6292 3.6760 16 6 2.2908 0.3992 4.7889 17 1 1.9897 -0.0668 5.7272 18 6 3.5204 1.3095 4.9365 19 7 3.0657 2.7015 4.8598 20 6 3.8745 3.8040 4.9344 21 1 3.4463 4.7933 4.8682 22 6 5.2446 3.6499 5.0951 23 7 5.7664 2.4443 5.1762 24 14 6.3481 5.1539 5.1961 25 1 5.5221 6.3826 5.0801 26 1 7.0607 5.1583 6.4989 27 1 7.3385 5.1164 4.0903 28 6 1.6082 2.7281 4.6912 29 6 1.1935 1.3293 4.2007 30 1 0.1848 1.0520 4.5069 31 6 1.4301 1.2377 2.6801 32 1 -0.3634 0.5922 -0.8399 33 1 -0.3633 -1.0234 -0.0928 34 1 -0.3633 0.4313 0.9328 35 1 1.2537 0.6548 -2.5588 36 1 2.9319 0.9515 -2.0450 37 1 4.7790 -0.3663 -2.9974 38 1 5.5372 -1.7088 -4.9176 39 1 1.6236 -2.4001 -6.1142 40 1 0.7476 -1.0861 -4.2247 41 1 2.0525 -1.5684 3.9190 42 1 3.6213 -0.7957 3.5695 43 1 3.9981 1.1303 5.8996 44 1 4.2270 1.1077 4.1314 45 1 6.7239 2.3367 5.2881 46 1 1.3320 3.4798 3.9517 47 1 1.1264 2.9471 5.6441 48 1 2.1259 2.0134 2.3603 49 1 0.4839 1.3427 2.1491 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484411822.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:46 Heat of formation + Delta-G solvation = -26.538395 kcal Electronic energy + Delta-G solvation = -30371.771981 eV Core-core repulsion = 26299.085889 eV Total energy + Delta-G solvation = -4072.686093 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.70888 -41.13832 -40.02295 -38.59773 -36.59332 -34.56510 -34.11328 -32.72311 -32.17784 -31.28272 -31.10522 -27.93285 -27.53305 -27.01187 -25.57648 -24.44873 -23.80244 -22.99036 -21.82960 -20.84237 -20.61875 -18.91443 -18.55612 -17.85877 -17.65404 -17.42919 -17.34398 -16.64368 -16.56443 -16.29292 -16.18144 -15.61779 -15.48764 -14.83841 -14.81596 -14.61737 -14.60071 -14.34589 -14.20283 -13.82023 -13.64430 -13.58326 -13.27631 -13.14735 -13.06866 -12.89830 -12.75705 -12.68545 -12.49780 -12.28744 -11.93738 -11.87980 -11.84167 -11.52215 -11.32585 -11.14253 -10.79185 -10.72621 -10.54748 -10.50136 -10.11913 -9.69504 -8.85815 -7.84344 -5.18990 0.09812 0.16754 1.43448 1.45940 1.46393 1.56510 1.72991 2.49802 2.61904 3.01991 3.25972 3.34988 3.48980 3.55313 3.63960 3.70642 3.73868 3.85005 3.89418 3.95681 4.04548 4.08388 4.17051 4.23405 4.31751 4.35872 4.39359 4.48776 4.53633 4.66711 4.69346 4.75216 4.81058 4.85472 4.85850 4.92554 4.95642 5.07085 5.10629 5.19562 5.24352 5.31869 5.42096 5.50753 5.63915 5.72299 5.78821 5.95590 6.22443 6.45822 6.96727 7.04115 7.12259 7.82309 8.43106 9.25761 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012207 B = 0.002565 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.274152 B =10915.524327 C =12201.721203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.079 3.921 3 H 0.103 0.897 4 O -0.380 6.380 5 C 0.095 3.905 6 C -0.060 4.060 7 C -0.165 4.165 8 C 0.084 3.916 9 N -0.509 5.509 10 C 0.086 3.914 11 C -0.150 4.150 12 C 0.520 3.480 13 O -0.578 6.578 14 N -0.606 5.606 15 C 0.125 3.875 16 C -0.112 4.112 17 H 0.114 0.886 18 C 0.197 3.803 19 N -0.623 5.623 20 C -0.232 4.232 21 H 0.089 0.911 22 C -0.069 4.069 23 N -0.953 5.953 24 Si 0.973 3.027 25 H -0.260 1.260 26 H -0.297 1.297 27 H -0.297 1.297 28 C 0.138 3.862 29 C -0.092 4.092 30 H 0.139 0.861 31 C 0.107 3.893 32 H 0.100 0.900 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.140 0.860 38 H 0.173 0.827 39 H 0.184 0.816 40 H 0.163 0.837 41 H 0.076 0.924 42 H 0.037 0.963 43 H 0.002 0.998 44 H 0.007 0.993 45 H 0.243 0.757 46 H 0.054 0.946 47 H 0.031 0.969 48 H 0.055 0.945 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.800 -2.798 -15.595 22.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.019 3.981 3 H 0.120 0.880 4 O -0.299 6.299 5 C 0.019 3.981 6 C -0.068 4.068 7 C -0.185 4.185 8 C -0.072 4.072 9 N -0.218 5.218 10 C -0.071 4.071 11 C -0.170 4.170 12 C 0.309 3.691 13 O -0.457 6.457 14 N -0.340 5.340 15 C 0.002 3.998 16 C -0.132 4.132 17 H 0.132 0.868 18 C 0.072 3.928 19 N -0.350 5.350 20 C -0.362 4.362 21 H 0.106 0.894 22 C -0.262 4.262 23 N -0.602 5.602 24 Si 0.802 3.198 25 H -0.184 1.184 26 H -0.224 1.224 27 H -0.225 1.225 28 C 0.013 3.987 29 C -0.112 4.112 30 H 0.157 0.843 31 C -0.015 4.015 32 H 0.119 0.881 33 H 0.080 0.920 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.158 0.842 38 H 0.191 0.809 39 H 0.201 0.799 40 H 0.181 0.819 41 H 0.094 0.906 42 H 0.056 0.944 43 H 0.020 0.980 44 H 0.025 0.975 45 H 0.052 0.948 46 H 0.072 0.928 47 H 0.049 0.951 48 H 0.074 0.926 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -15.040 -4.039 -16.410 22.623 hybrid contribution 1.494 1.179 1.231 2.267 sum -13.545 -2.860 -15.179 20.544 Atomic orbital electron populations 1.22267 0.90400 1.04041 1.05345 1.21963 0.97293 0.95895 0.82987 0.87964 1.88067 1.87108 1.35248 1.19480 1.21624 1.01961 0.91239 0.83289 1.20240 0.93933 0.97242 0.95358 1.22330 0.96565 1.00202 0.99402 1.23087 1.00634 0.93015 0.90443 1.67692 1.04421 1.20449 1.29286 1.23283 0.91853 0.95258 0.96675 1.22379 1.02165 0.97345 0.95063 1.20773 0.78169 0.85968 0.84180 1.90674 1.48616 1.20438 1.85993 1.48288 1.58176 1.19826 1.07670 1.21684 0.97634 0.97163 0.83320 1.22991 0.96708 0.95378 0.98088 0.86778 1.20749 0.91676 0.82994 0.97371 1.44523 1.02707 1.01975 1.85767 1.19492 0.88587 0.86732 1.41348 0.89358 1.25626 0.98426 0.99173 1.02991 1.70210 1.10536 1.21441 1.58055 0.85075 0.78804 0.79486 0.76395 1.18448 1.22413 1.22487 1.21420 0.83586 0.95361 0.98313 1.23024 0.99882 0.94927 0.93332 0.84333 1.22376 0.99296 0.82844 0.96940 0.88113 0.91984 0.89093 0.88444 0.91293 0.84243 0.80946 0.79933 0.81944 0.90585 0.94417 0.97970 0.97510 0.94781 0.92833 0.95144 0.92627 0.86654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 9.39 71.98 0.68 -1.77 16 2 C 0.08 1.84 2.50 29.85 0.07 1.91 16 3 H 0.10 2.01 7.50 -2.38 -0.02 1.99 16 4 O -0.38 -9.96 9.56 -130.50 -1.25 -11.21 16 5 C 0.09 1.72 5.92 71.24 0.42 2.14 16 6 C -0.06 -1.19 5.55 -19.67 -0.11 -1.30 16 7 C -0.17 -3.49 9.82 22.36 0.22 -3.27 16 8 C 0.08 1.75 11.18 84.68 0.95 2.70 16 9 N -0.51 -11.29 10.36 -195.85 -2.03 -13.32 16 10 C 0.09 1.51 11.18 84.68 0.95 2.45 16 11 C -0.15 -2.48 9.82 22.36 0.22 -2.26 16 12 C 0.52 17.06 7.12 87.66 0.62 17.68 16 13 O -0.58 -24.49 16.90 15.45 0.26 -24.23 16 14 N -0.61 -18.74 3.31 -817.00 -2.71 -21.44 16 15 C 0.12 4.25 6.24 86.59 0.54 4.79 16 16 C -0.11 -3.72 4.02 -9.49 -0.04 -3.76 16 17 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 18 C 0.20 9.31 4.75 86.59 0.41 9.72 16 19 N -0.62 -29.44 3.37 -697.87 -2.35 -31.79 16 20 C -0.23 -12.29 10.25 84.03 0.86 -11.43 16 21 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 22 C -0.07 -3.86 5.48 84.86 0.47 -3.40 16 23 N -0.95 -57.12 10.25 21.65 0.22 -56.89 16 24 Si 0.97 44.92 29.55 68.60 2.03 46.95 16 25 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 26 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 27 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 28 C 0.14 4.66 6.37 86.65 0.55 5.21 16 29 C -0.09 -2.42 4.19 -9.26 -0.04 -2.46 16 30 H 0.14 2.50 8.14 -2.39 -0.02 2.48 16 31 C 0.11 2.71 5.58 86.72 0.48 3.19 16 32 H 0.10 0.91 7.99 -2.39 -0.02 0.89 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.09 1.10 5.80 -2.39 -0.01 1.08 16 35 H 0.10 1.11 7.95 -2.39 -0.02 1.09 16 36 H 0.07 1.19 8.04 -2.39 -0.02 1.17 16 37 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 38 H 0.17 2.74 8.06 -2.91 -0.02 2.72 16 39 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 40 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 41 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.04 1.54 7.44 -2.38 -0.02 1.52 16 43 H 0.00 0.11 7.45 -2.39 -0.02 0.09 16 44 H 0.01 0.37 6.51 -2.39 -0.02 0.36 16 45 H 0.24 14.35 8.31 -92.71 -0.77 13.58 16 46 H 0.05 1.66 7.95 -2.39 -0.02 1.64 16 47 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 48 H 0.06 1.71 7.72 -2.39 -0.02 1.69 16 49 H 0.12 1.86 5.59 -2.39 -0.01 1.85 16 Total: -1.00 -80.35 392.98 2.38 -77.97 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.95 Total: 13.83 kcal Atomic # 6 Polarization: 12.87 SS G_CDS: 7.26 Total: 20.13 kcal Atomic # 7 Polarization: -116.58 SS G_CDS: -6.86 Total: -123.44 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.99 Total: -35.44 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -80.35 2.38 -77.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484411822.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.437 kcal (2) G-P(sol) polarization free energy of solvation -80.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds