Wall clock time and date at job start Wed Apr 1 2020 03:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47380 * 2 1 4 4 C 1.53003 * 109.47243 * 119.99246 * 2 1 3 5 5 N 1.46898 * 109.47191 * 174.99793 * 4 2 1 6 6 C 1.46909 * 110.99931 * 180.02562 * 5 4 2 7 7 C 1.50700 * 109.46975 * 180.02562 * 6 5 4 8 8 O 1.21290 * 119.99848 * 0.02562 * 7 6 5 9 9 N 1.34772 * 119.99583 * 179.97438 * 7 6 5 10 10 C 1.37103 * 119.99651 * 179.97438 * 9 7 6 11 11 H 1.07997 * 120.00035 * 0.02562 * 10 9 7 12 12 C 1.38951 * 119.99899 * 179.97438 * 10 9 7 13 13 N 1.31415 * 120.00024 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99889 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46873 * 60.00598 * 14 12 10 16 16 H 1.48505 * 109.47175 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47110 * 300.00378 * 14 12 10 18 18 N 1.46494 * 109.47305 * 239.99352 * 2 1 3 19 19 C 1.34784 * 119.99635 * 85.00093 * 18 2 1 20 20 O 1.21279 * 119.99925 * 359.97438 * 19 18 2 21 21 C 1.50700 * 119.99961 * 180.02562 * 19 18 2 22 22 H 1.09006 * 115.54583 * 325.58318 * 21 19 18 23 23 C 1.52990 * 117.50076 * 111.25060 * 21 19 18 24 24 C 1.52994 * 117.50178 * 179.91226 * 21 19 18 25 25 H 1.09000 * 117.49579 * 0.02574 * 24 21 19 26 26 C 1.50700 * 117.50185 * 145.01816 * 24 21 19 27 27 C 1.38238 * 119.99922 * 59.72988 * 26 24 21 28 28 C 1.38227 * 119.99763 * 179.79197 * 27 26 24 29 29 C 1.38233 * 120.00446 * 0.43654 * 28 27 26 30 30 C 1.38239 * 119.99668 * 359.81543 * 29 28 27 31 31 C 1.38231 * 120.00059 * 359.97438 * 30 29 28 32 32 H 1.08991 * 109.46933 * 60.00690 * 1 2 3 33 33 H 1.09000 * 109.46920 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.46997 * 300.00209 * 1 2 3 35 35 H 1.09000 * 109.47461 * 295.00683 * 4 2 1 36 36 H 1.09011 * 109.46575 * 55.00317 * 4 2 1 37 37 H 1.00897 * 111.00192 * 303.95862 * 5 4 2 38 38 H 1.08997 * 109.46848 * 300.00742 * 6 5 4 39 39 H 1.08999 * 109.46466 * 60.00811 * 6 5 4 40 40 H 0.96996 * 120.00373 * 0.02562 * 9 7 6 41 41 H 0.96995 * 119.99598 * 179.97438 * 13 12 10 42 42 H 0.96995 * 120.00292 * 265.27526 * 18 2 1 43 43 H 1.09007 * 117.50448 * 214.97881 * 23 21 19 44 44 H 1.09002 * 117.49835 * 359.97438 * 23 21 19 45 45 H 1.08000 * 119.99838 * 359.97438 * 27 26 24 46 46 H 1.08000 * 119.99887 * 180.27170 * 28 27 26 47 47 H 1.07998 * 120.00695 * 179.83506 * 29 28 27 48 48 H 1.08002 * 119.99750 * 179.97438 * 30 29 28 49 49 H 1.07997 * 120.00170 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7211 1.2494 5 7 3.5041 -0.8266 1.1905 6 6 4.0303 -1.5157 2.3764 7 6 5.5317 -1.6042 2.2809 8 8 6.1067 -1.1386 1.3199 9 7 6.2354 -2.1998 3.2640 10 6 7.6013 -2.2807 3.1769 11 1 8.1133 -1.8669 2.3208 12 6 8.3269 -2.8943 4.1907 13 7 7.7039 -3.3974 5.2327 14 14 10.1879 -3.0040 4.0724 15 1 10.7607 -1.6359 3.9989 16 1 10.7200 -3.7001 5.2715 17 1 10.5624 -3.7637 2.8527 18 7 2.0184 -0.6907 -1.1960 19 6 2.1471 -0.0184 -2.3571 20 8 1.8582 1.1582 -2.4117 21 6 2.6489 -0.7290 -3.5876 22 1 3.3941 -1.5048 -3.4114 23 6 1.6558 -0.9499 -4.7302 24 6 2.7710 0.0885 -4.8751 25 1 2.4887 1.1404 -4.8320 26 6 3.9120 -0.2408 -5.8029 27 6 4.0211 -1.5093 -6.3412 28 6 5.0652 -1.8101 -7.1956 29 6 6.0054 -0.8450 -7.5047 30 6 5.8992 0.4221 -6.9623 31 6 4.8526 0.7242 -6.1113 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5139 0.8899 35 1 1.7516 -0.1582 2.1370 36 1 1.6054 -1.7197 1.2953 37 1 3.7996 -1.2883 0.3435 38 1 3.7557 -0.9586 3.2721 39 1 3.6095 -2.5197 2.4296 40 1 5.7756 -2.5718 4.0328 41 1 8.2105 -3.8261 5.9402 42 1 2.2453 -1.6328 -1.1534 43 1 1.7478 -1.8708 -5.3062 44 1 0.6393 -0.5817 -4.5917 45 1 3.2889 -2.2646 -6.0965 46 1 5.1480 -2.7999 -7.6197 47 1 6.8227 -1.0806 -8.1702 48 1 6.6339 1.1761 -7.2034 49 1 4.7698 1.7139 -5.6872 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498131540.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:30 Heat of formation + Delta-G solvation = -49.264531 kcal Electronic energy + Delta-G solvation = -28821.319849 eV Core-core repulsion = 24747.648277 eV Total energy + Delta-G solvation = -4073.671572 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.37276 -40.28410 -40.03931 -38.18445 -37.07436 -36.03104 -35.08026 -33.27017 -32.26941 -31.83343 -31.31803 -28.98753 -26.74733 -25.80500 -24.74241 -24.54595 -23.30920 -22.09762 -21.45981 -21.15889 -20.93855 -19.91697 -18.73849 -18.04092 -17.63937 -17.27898 -16.91248 -16.39577 -16.23186 -16.06648 -15.89991 -15.85017 -15.44357 -15.20820 -15.14938 -14.89708 -14.34918 -14.25988 -14.05712 -13.82371 -13.56550 -13.54965 -13.36462 -13.10602 -13.04353 -12.89674 -12.80341 -12.67035 -12.44124 -12.22927 -12.13148 -11.96243 -11.94428 -11.65647 -11.51338 -11.44270 -10.91189 -10.38162 -10.10932 -10.02494 -9.82639 -9.50431 -9.33514 -8.47562 -5.96285 0.36295 0.49739 1.38993 1.41154 1.49194 1.51866 2.04636 2.12711 2.28459 2.67321 2.88275 3.07977 3.19832 3.47478 3.55063 3.67630 3.82170 3.88871 3.97858 4.11549 4.16918 4.19549 4.25084 4.27515 4.29366 4.36951 4.49295 4.58517 4.58958 4.67040 4.69247 4.74333 4.74597 4.79206 4.93655 5.04582 5.08330 5.14410 5.17287 5.26816 5.39875 5.52184 5.57890 5.62851 5.69833 5.85930 6.07975 6.11182 6.35955 6.51178 6.59529 7.11898 7.23146 7.55537 8.11308 8.69540 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007920 B = 0.002389 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3534.677317 B =11715.969814 C =14689.992542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.145 3.855 3 H 0.063 0.937 4 C 0.057 3.943 5 N -0.689 5.689 6 C 0.065 3.935 7 C 0.435 3.565 8 O -0.625 6.625 9 N -0.572 5.572 10 C -0.335 4.335 11 H 0.077 0.923 12 C -0.011 4.011 13 N -0.919 5.919 14 Si 0.991 3.009 15 H -0.274 1.274 16 H -0.269 1.269 17 H -0.271 1.271 18 N -0.709 5.709 19 C 0.543 3.457 20 O -0.583 6.583 21 C -0.184 4.184 22 H 0.135 0.865 23 C -0.117 4.117 24 C -0.094 4.094 25 H 0.106 0.894 26 C -0.066 4.066 27 C -0.125 4.125 28 C -0.124 4.124 29 C -0.132 4.132 30 C -0.129 4.129 31 C -0.133 4.133 32 H 0.046 0.954 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.061 0.939 37 H 0.343 0.657 38 H 0.106 0.894 39 H 0.074 0.926 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.410 0.590 43 H 0.135 0.865 44 H 0.106 0.894 45 H 0.145 0.855 46 H 0.146 0.854 47 H 0.141 0.859 48 H 0.135 0.865 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.612 -0.873 -19.198 24.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.040 3.960 3 H 0.081 0.919 4 C -0.072 4.072 5 N -0.322 5.322 6 C -0.067 4.067 7 C 0.223 3.777 8 O -0.512 6.512 9 N -0.209 5.209 10 C -0.465 4.465 11 H 0.095 0.905 12 C -0.211 4.211 13 N -0.560 5.560 14 Si 0.815 3.185 15 H -0.199 1.199 16 H -0.194 1.194 17 H -0.196 1.196 18 N -0.360 5.360 19 C 0.331 3.669 20 O -0.463 6.463 21 C -0.205 4.205 22 H 0.153 0.847 23 C -0.154 4.154 24 C -0.113 4.113 25 H 0.124 0.876 26 C -0.066 4.066 27 C -0.143 4.143 28 C -0.141 4.141 29 C -0.150 4.150 30 C -0.146 4.146 31 C -0.151 4.151 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.117 0.883 36 H 0.079 0.921 37 H 0.162 0.838 38 H 0.124 0.876 39 H 0.092 0.908 40 H 0.231 0.769 41 H 0.088 0.912 42 H 0.246 0.754 43 H 0.152 0.848 44 H 0.125 0.875 45 H 0.162 0.838 46 H 0.163 0.837 47 H 0.159 0.841 48 H 0.153 0.847 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.268 0.790 -19.385 24.689 hybrid contribution 0.884 -1.112 0.556 1.526 sum -14.384 -0.322 -18.829 23.697 Atomic orbital electron populations 1.22050 0.92949 1.03255 1.02672 1.21002 0.94890 0.96785 0.83296 0.91852 1.22365 0.86127 1.00633 0.98107 1.59987 1.10347 1.57662 1.04206 1.21553 0.90138 0.99195 0.95788 1.20953 0.90783 0.82190 0.83823 1.90504 1.72887 1.52745 1.35071 1.41917 1.06816 1.51569 1.20622 1.19612 0.83155 1.37008 1.06727 0.90523 1.26014 1.04825 0.95787 0.94489 1.69658 1.38343 1.38386 1.09606 0.85019 0.76901 0.78561 0.78051 1.19934 1.19352 1.19598 1.45890 1.66736 1.14271 1.09147 1.19969 0.76137 0.86185 0.84610 1.90663 1.52335 1.17626 1.85697 1.22351 1.05920 1.04220 0.88036 0.84696 1.23250 0.94504 1.00984 0.96644 1.20984 0.97291 0.98216 0.94760 0.87629 1.19231 0.95232 0.94657 0.97469 1.21321 0.99316 0.95963 0.97658 1.21486 0.94373 1.00393 0.97880 1.21511 0.99814 0.93343 1.00363 1.21408 0.98084 0.97881 0.97269 1.21200 0.95236 0.99729 0.98921 0.93489 0.90596 0.89991 0.88324 0.92094 0.83802 0.87631 0.90821 0.76872 0.91244 0.75434 0.84753 0.87523 0.83766 0.83673 0.84115 0.84694 0.86407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.48 71.98 0.68 -1.81 16 2 C 0.15 3.15 2.88 44.99 0.13 3.28 16 3 H 0.06 1.84 7.58 -2.39 -0.02 1.82 16 4 C 0.06 1.16 5.30 86.30 0.46 1.62 16 5 N -0.69 -20.89 6.12 -517.90 -3.17 -24.06 16 6 C 0.07 2.13 6.17 85.56 0.53 2.66 16 7 C 0.43 20.54 7.82 87.66 0.69 21.23 16 8 O -0.63 -35.00 15.78 -3.06 -0.05 -35.05 16 9 N -0.57 -29.14 5.29 -306.99 -1.62 -30.76 16 10 C -0.34 -19.09 9.68 84.04 0.81 -18.27 16 11 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 12 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 13 N -0.92 -49.26 13.05 21.66 0.28 -48.98 16 14 Si 0.99 42.91 29.55 68.60 2.03 44.94 16 15 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 16 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 17 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 18 N -0.71 -15.04 4.35 -442.53 -1.92 -16.97 16 19 C 0.54 13.92 7.58 87.66 0.66 14.58 16 20 O -0.58 -19.63 15.92 -3.03 -0.05 -19.67 16 21 C -0.18 -3.66 5.82 -11.55 -0.07 -3.73 16 22 H 0.14 2.44 8.14 -2.38 -0.02 2.42 16 23 C -0.12 -1.69 9.56 30.61 0.29 -1.40 16 24 C -0.09 -1.94 5.56 -11.52 -0.06 -2.00 16 25 H 0.11 2.59 7.67 -2.39 -0.02 2.58 16 26 C -0.07 -1.35 5.61 -19.87 -0.11 -1.46 16 27 C -0.12 -2.08 9.29 22.27 0.21 -1.88 16 28 C -0.12 -1.93 10.05 22.27 0.22 -1.70 16 29 C -0.13 -2.20 10.05 22.27 0.22 -1.97 16 30 C -0.13 -2.43 10.05 22.27 0.22 -2.21 16 31 C -0.13 -2.90 9.74 22.27 0.22 -2.68 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.06 0.95 8.14 -2.38 -0.02 0.94 16 37 H 0.34 10.86 7.29 -89.70 -0.65 10.21 16 38 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 39 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.40 19.04 7.90 -92.71 -0.73 18.30 16 41 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 42 H 0.41 6.77 8.17 -92.71 -0.76 6.02 16 43 H 0.13 1.21 6.18 -2.38 -0.01 1.20 16 44 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.14 1.65 6.03 -2.91 -0.02 1.63 16 46 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 47 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 48 H 0.14 2.06 8.06 -2.91 -0.02 2.03 16 49 H 0.12 2.55 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -76.53 413.29 -0.08 -76.61 By element: Atomic # 1 Polarization: 50.95 SS G_CDS: -1.15 Total: 49.80 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 5.57 Total: 4.13 kcal Atomic # 7 Polarization: -114.33 SS G_CDS: -6.43 Total: -120.76 kcal Atomic # 8 Polarization: -54.62 SS G_CDS: -0.10 Total: -54.72 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -76.53 -0.08 -76.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498131540.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.346 kcal (2) G-P(sol) polarization free energy of solvation -76.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds