Wall clock time and date at job start Wed Apr 1 2020 04:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.47492 * 2 1 4 4 O 1.42899 * 109.47001 * 120.00126 * 2 1 3 5 5 C 1.35919 * 116.99827 * 273.90606 * 4 2 1 6 6 C 1.39140 * 120.47213 * 5.12953 * 5 4 2 7 7 C 1.38534 * 118.37360 * 180.02562 * 6 5 4 8 8 C 1.38260 * 119.21941 * 359.97438 * 7 6 5 9 9 N 1.31846 * 120.88944 * 0.02562 * 8 7 6 10 10 C 1.31844 * 121.77767 * 359.69846 * 9 8 7 11 11 C 1.50701 * 109.47246 * 239.99721 * 2 1 3 12 12 O 1.21278 * 120.00437 * 245.00551 * 11 2 1 13 13 N 1.34777 * 119.99807 * 64.99637 * 11 2 1 14 14 C 1.46499 * 119.99967 * 180.02562 * 13 11 2 15 15 C 1.53144 * 109.40248 * 275.20627 * 14 13 11 16 16 C 1.53700 * 108.88204 * 186.06400 * 15 14 13 17 17 H 1.08990 * 112.10641 * 188.25455 * 16 15 14 18 18 C 1.54607 * 107.83213 * 312.23327 * 16 15 14 19 19 C 1.54309 * 104.75622 * 88.66284 * 18 16 15 20 20 C 1.54895 * 104.78513 * 0.03100 * 19 18 16 21 21 H 1.08998 * 112.34185 * 147.45128 * 20 19 18 22 22 C 1.53146 * 109.43632 * 155.00651 * 14 13 11 23 23 N 1.48282 * 104.12952 * 25.07609 * 20 19 18 24 24 C 1.36934 * 128.09966 * 138.46150 * 23 20 19 25 25 H 1.07996 * 120.00099 * 343.89916 * 24 23 20 26 26 C 1.38813 * 119.99994 * 163.89013 * 24 23 20 27 27 N 1.31624 * 119.99750 * 350.91475 * 26 24 23 28 28 Si 1.86799 * 120.00060 * 170.90822 * 26 24 23 29 29 H 1.48494 * 109.47003 * 94.94180 * 28 26 24 30 30 H 1.48502 * 109.47223 * 214.94615 * 28 26 24 31 31 H 1.48499 * 109.46909 * 334.94038 * 28 26 24 32 32 H 1.09003 * 109.47268 * 59.99621 * 1 2 3 33 33 H 1.09002 * 109.47892 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47141 * 300.00259 * 1 2 3 35 35 H 1.08001 * 120.81064 * 359.97428 * 6 5 4 36 36 H 1.07998 * 120.39103 * 180.02562 * 7 6 5 37 37 H 1.07995 * 119.55247 * 179.97438 * 8 7 6 38 38 H 1.07996 * 119.65912 * 180.29254 * 10 9 8 39 39 H 0.97000 * 120.00281 * 0.02562 * 13 11 2 40 40 H 1.09001 * 109.43593 * 35.09485 * 14 13 11 41 41 H 1.09008 * 109.56804 * 305.88220 * 15 14 13 42 42 H 1.08997 * 109.57056 * 66.24462 * 15 14 13 43 43 H 1.08996 * 110.38528 * 207.48503 * 18 16 15 44 44 H 1.09003 * 110.37942 * 329.73395 * 18 16 15 45 45 H 1.08999 * 110.38498 * 118.81500 * 19 18 16 46 46 H 1.08999 * 110.38396 * 241.18471 * 19 18 16 47 47 H 1.09001 * 109.56678 * 293.73559 * 22 14 13 48 48 H 1.09005 * 109.57035 * 53.96775 * 22 14 13 49 49 H 0.96998 * 119.99238 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6737 1.1668 5 6 2.1341 0.0681 2.2985 6 6 1.7101 1.3930 2.3255 7 6 1.8616 2.1089 3.5018 8 6 2.4241 1.4884 4.6018 9 7 2.8157 0.2308 4.5430 10 6 2.6843 -0.4866 3.4446 11 6 2.0323 -0.7105 -1.2304 12 8 2.6528 -1.7468 -1.1215 13 7 1.7918 -0.1943 -2.4520 14 6 2.2796 -0.8852 -3.6482 15 6 3.7307 -0.4754 -3.9161 16 6 4.1810 -1.0852 -5.2532 17 1 5.2480 -0.9482 -5.4279 18 6 3.7762 -2.5773 -5.2533 19 6 2.3439 -2.5960 -5.8273 20 6 2.0167 -1.1109 -6.1218 21 1 1.3622 -0.9942 -6.9855 22 6 1.4065 -0.5056 -4.8477 23 7 3.3441 -0.4797 -6.3173 24 6 3.7095 0.4451 -7.2588 25 1 3.0865 0.6082 -8.1258 26 6 4.8806 1.1730 -7.0989 27 7 5.5461 1.1080 -5.9652 28 14 5.5120 2.2445 -8.4926 29 1 5.0367 3.6381 -8.2999 30 1 6.9969 2.2243 -8.4989 31 1 5.0045 1.7229 -9.7870 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3635 -1.0276 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.2743 1.8523 1.4505 36 1 1.5433 3.1393 3.5591 37 1 2.5451 2.0416 5.5214 38 1 3.0125 -1.5155 3.4359 39 1 1.2957 0.6347 -2.5392 40 1 2.2303 -1.9626 -3.4902 41 1 3.7994 0.6112 -3.9688 42 1 4.3686 -0.8448 -3.1132 43 1 4.4479 -3.1529 -5.8901 44 1 3.7851 -2.9731 -4.2377 45 1 2.3109 -3.1806 -6.7466 46 1 1.6462 -3.0004 -5.0940 47 1 0.3991 -0.8964 -4.7041 48 1 1.3670 0.5796 -4.9417 49 1 6.3646 1.6164 -5.8536 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566822022.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:59 Heat of formation + Delta-G solvation = -3.274635 kcal Electronic energy + Delta-G solvation = -30871.285742 eV Core-core repulsion = 26799.608442 eV Total energy + Delta-G solvation = -4071.677300 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.08448 -40.07151 -39.05090 -37.86701 -34.57959 -32.89277 -32.52796 -32.31855 -30.37772 -30.30260 -29.40890 -29.20820 -25.34008 -24.62001 -23.94473 -23.36087 -23.15289 -21.55584 -20.25988 -19.34424 -18.75041 -18.69422 -17.68473 -17.00288 -16.75814 -16.27522 -16.06456 -15.86039 -14.84684 -14.79213 -14.62074 -14.33362 -14.11442 -13.95898 -13.54728 -13.29981 -13.15037 -13.06319 -12.84229 -12.62351 -12.45452 -12.15073 -11.99522 -11.85424 -11.55274 -11.47143 -11.41001 -11.05549 -10.85714 -10.71269 -10.65713 -10.14908 -10.10996 -9.86641 -9.82888 -9.71740 -9.60798 -9.46131 -9.36467 -8.78679 -8.67450 -8.47621 -6.86054 -5.80615 -3.16116 0.84969 0.95309 2.44557 2.67194 3.34407 3.41752 3.43008 3.51782 3.52911 4.20761 4.30683 4.42969 4.46327 4.47982 4.56743 4.67852 4.80519 4.92901 5.16651 5.19309 5.25311 5.36045 5.44972 5.46204 5.66623 5.69638 5.75050 5.75546 5.76376 5.86233 5.92449 5.96292 6.10819 6.15320 6.25795 6.36063 6.48568 6.61612 6.64130 6.70140 6.82216 6.88547 6.94637 7.01039 7.13938 7.52094 7.55073 7.68637 7.70384 7.74344 8.19908 8.34110 9.09632 9.71944 10.50919 11.31629 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015432 B = 0.002548 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.978520 B =10988.463889 C =11840.403493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.063 3.937 3 H 0.097 0.903 4 O -0.276 6.276 5 C 0.086 3.914 6 C -0.171 4.171 7 C -0.130 4.130 8 C 0.053 3.947 9 N -0.447 5.447 10 C 0.076 3.924 11 C 0.515 3.485 12 O -0.518 6.518 13 N -0.716 5.716 14 C 0.147 3.853 15 C -0.121 4.121 16 C 0.184 3.816 17 H 0.108 0.892 18 C -0.146 4.146 19 C -0.132 4.132 20 C 0.152 3.848 21 H 0.071 0.929 22 C -0.135 4.135 23 N -0.583 5.583 24 C -0.225 4.225 25 H 0.074 0.926 26 C -0.004 4.004 27 N -0.909 5.909 28 Si 0.908 3.092 29 H -0.290 1.290 30 H -0.291 1.291 31 H -0.281 1.281 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.157 0.843 38 H 0.165 0.835 39 H 0.394 0.606 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.043 0.957 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.048 0.952 48 H 0.065 0.935 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.723 0.914 14.687 18.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.003 3.997 3 H 0.115 0.885 4 O -0.186 6.186 5 C 0.037 3.963 6 C -0.197 4.197 7 C -0.150 4.150 8 C -0.104 4.104 9 N -0.156 5.156 10 C -0.083 4.083 11 C 0.298 3.702 12 O -0.393 6.393 13 N -0.367 5.367 14 C 0.045 3.955 15 C -0.162 4.162 16 C 0.077 3.923 17 H 0.126 0.874 18 C -0.185 4.185 19 C -0.171 4.171 20 C 0.043 3.957 21 H 0.089 0.911 22 C -0.175 4.175 23 N -0.303 5.303 24 C -0.354 4.354 25 H 0.092 0.908 26 C -0.201 4.201 27 N -0.555 5.555 28 Si 0.739 3.261 29 H -0.217 1.217 30 H -0.217 1.217 31 H -0.206 1.206 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.159 0.841 36 H 0.156 0.844 37 H 0.175 0.825 38 H 0.183 0.817 39 H 0.228 0.772 40 H 0.102 0.898 41 H 0.093 0.907 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.067 0.933 48 H 0.084 0.916 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.654 -0.257 15.356 18.692 hybrid contribution -0.385 1.851 -1.430 2.370 sum -11.039 1.594 13.927 17.842 Atomic orbital electron populations 1.22310 0.92524 1.04580 1.03718 1.22344 0.95780 0.97220 0.84406 0.88543 1.86262 1.80596 1.35996 1.15773 1.20291 0.96330 0.91143 0.88487 1.21800 1.03745 0.93953 1.00231 1.22004 0.98833 1.01099 0.93025 1.22676 0.97651 0.91276 0.98810 1.67750 1.14689 1.07436 1.25727 1.22274 0.98729 1.01023 0.86250 1.19865 0.80529 0.85748 0.84016 1.90740 1.39231 1.23108 1.86186 1.46261 1.57285 1.27485 1.05688 1.21408 0.95478 0.96837 0.81767 1.22417 0.92447 1.02661 0.98653 1.21425 0.98107 0.86660 0.86127 0.87402 1.22815 0.96102 1.00276 0.99303 1.22701 0.97036 0.97772 0.99583 1.21550 0.89292 0.91250 0.93640 0.91094 1.22511 0.96913 1.01739 0.96344 1.45180 1.03943 1.46424 1.34792 1.18971 1.06021 1.12126 0.98251 0.90791 1.24853 0.99319 0.98992 0.96930 1.69892 1.18214 1.44394 1.23008 0.86173 0.78144 0.80225 0.81598 1.21733 1.21679 1.20633 0.89962 0.90456 0.90964 0.84094 0.84438 0.82531 0.81736 0.77224 0.89778 0.90658 0.93859 0.92866 0.92412 0.92694 0.92681 0.93308 0.91605 0.93713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 9.18 37.15 0.34 -1.08 16 2 C 0.06 0.71 2.63 -27.89 -0.07 0.64 16 3 H 0.10 0.90 6.26 -51.93 -0.32 0.58 16 4 O -0.28 -3.66 9.34 -39.35 -0.37 -4.03 16 5 C 0.09 0.99 6.63 -39.07 -0.26 0.73 16 6 C -0.17 -1.56 8.40 -39.14 -0.33 -1.89 16 7 C -0.13 -1.03 10.11 -39.46 -0.40 -1.43 16 8 C 0.05 0.47 11.18 -17.54 -0.20 0.28 16 9 N -0.45 -5.14 10.36 -13.13 -0.14 -5.27 16 10 C 0.08 0.89 11.14 -17.37 -0.19 0.69 16 11 C 0.52 7.83 7.14 -10.98 -0.08 7.75 16 12 O -0.52 -10.20 16.17 -14.30 -0.23 -10.44 16 13 N -0.72 -10.22 5.04 -53.66 -0.27 -10.49 16 14 C 0.15 2.56 2.10 -67.78 -0.14 2.42 16 15 C -0.12 -2.56 5.09 -26.29 -0.13 -2.70 16 16 C 0.18 4.19 3.11 -65.73 -0.20 3.98 16 17 H 0.11 2.84 6.42 -51.93 -0.33 2.51 16 18 C -0.15 -2.83 5.98 -25.20 -0.15 -2.98 16 19 C -0.13 -2.30 5.99 -25.05 -0.15 -2.45 16 20 C 0.15 2.89 4.34 -65.59 -0.28 2.60 16 21 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 22 C -0.13 -2.25 5.08 -26.30 -0.13 -2.38 16 23 N -0.58 -13.69 2.82 -152.61 -0.43 -14.12 16 24 C -0.23 -5.88 10.37 -15.06 -0.16 -6.03 16 25 H 0.07 1.88 7.84 -52.49 -0.41 1.47 16 26 C 0.00 -0.10 5.42 -17.43 -0.09 -0.19 16 27 N -0.91 -25.13 10.57 55.49 0.59 -24.54 16 28 Si 0.91 21.19 29.56 -169.99 -5.03 16.16 16 29 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 30 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 31 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 32 H 0.08 0.52 7.93 -51.93 -0.41 0.11 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.49 7.09 -51.93 -0.37 0.12 16 35 H 0.14 0.99 5.65 -52.49 -0.30 0.70 16 36 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 37 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.17 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.39 4.46 8.39 -40.82 -0.34 4.12 16 40 H 0.08 1.56 4.97 -51.93 -0.26 1.30 16 41 H 0.07 1.80 7.94 -51.92 -0.41 1.39 16 42 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.06 1.08 7.05 -51.93 -0.37 0.72 16 45 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.05 0.86 7.04 -51.93 -0.37 0.50 16 47 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 49 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 385.11 15.07 5.80 5.80 Total: -1.00 -31.98 385.11 -9.96 -41.94 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -7.25 Total: 7.02 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -2.64 Total: -2.03 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.25 Total: -54.42 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.60 Total: -14.47 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.98 -9.96 -41.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566822022.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.664 kcal (2) G-P(sol) polarization free energy of solvation -31.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds