Wall clock time and date at job start Wed Apr 1 2020 03:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 120.00164 * 2 1 4 4 H 1.09001 * 109.47102 * 359.97438 * 3 2 1 5 5 C 1.50693 * 109.47248 * 119.99973 * 3 2 1 6 6 O 1.21284 * 120.00253 * 120.00271 * 5 3 2 7 7 N 1.34783 * 119.99935 * 299.99472 * 5 3 2 8 8 C 1.46497 * 119.99929 * 179.97438 * 7 5 3 9 9 H 1.08999 * 109.47329 * 325.00706 * 8 7 5 10 10 C 1.53003 * 109.46983 * 85.00203 * 8 7 5 11 11 C 1.52995 * 109.47448 * 205.00330 * 8 7 5 12 12 N 1.46900 * 109.47102 * 55.00083 * 11 8 7 13 13 C 1.46893 * 111.00478 * 180.02562 * 12 11 8 14 14 C 1.50697 * 109.47668 * 180.02562 * 13 12 11 15 15 O 1.21291 * 119.99731 * 359.97438 * 14 13 12 16 16 N 1.34779 * 120.00591 * 180.02562 * 14 13 12 17 17 C 1.37097 * 120.00428 * 180.02562 * 16 14 13 18 18 H 1.08000 * 119.99700 * 359.97438 * 17 16 14 19 19 C 1.38953 * 119.99938 * 179.97438 * 17 16 14 20 20 N 1.31409 * 119.99517 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00108 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47018 * 89.99628 * 21 19 17 23 23 H 1.48497 * 109.47216 * 209.99917 * 21 19 17 24 24 H 1.48508 * 109.47158 * 329.99929 * 21 19 17 25 25 C 1.50700 * 109.46878 * 239.99914 * 3 2 1 26 26 C 1.38233 * 119.99793 * 299.72757 * 25 3 2 27 27 C 1.38244 * 119.99785 * 179.81229 * 26 25 3 28 28 C 1.38234 * 119.99733 * 0.39343 * 27 26 25 29 29 C 1.38241 * 120.00135 * 359.85603 * 28 27 26 30 30 C 1.38226 * 120.00094 * 359.95876 * 29 28 27 31 31 H 1.07999 * 120.00108 * 179.72930 * 1 2 3 32 32 H 1.08000 * 119.99390 * 359.72719 * 1 2 3 33 33 H 1.08005 * 119.99846 * 180.27284 * 2 1 3 34 34 H 0.96999 * 120.00074 * 0.02562 * 7 5 3 35 35 H 1.08996 * 109.47306 * 300.00229 * 10 8 7 36 36 H 1.08999 * 109.46678 * 60.00103 * 10 8 7 37 37 H 1.09004 * 109.47084 * 180.02562 * 10 8 7 38 38 H 1.08995 * 109.47791 * 174.99872 * 11 8 7 39 39 H 1.08998 * 109.47043 * 295.00590 * 11 8 7 40 40 H 1.00906 * 110.99857 * 56.04688 * 12 11 8 41 41 H 1.09000 * 109.47347 * 300.00407 * 13 12 11 42 42 H 1.09004 * 109.46813 * 59.99782 * 13 12 11 43 43 H 0.97006 * 119.99137 * 359.97438 * 16 14 13 44 44 H 0.97004 * 119.99636 * 179.97438 * 20 19 17 45 45 H 1.07997 * 120.00258 * 359.97438 * 26 25 3 46 46 H 1.08001 * 119.99972 * 180.22778 * 27 26 25 47 47 H 1.07999 * 119.99873 * 179.83498 * 28 27 26 48 48 H 1.08000 * 119.99816 * 179.97438 * 29 28 27 49 49 H 1.08004 * 120.00093 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3553 2.1336 -0.0005 5 6 2.9300 1.3849 1.2304 6 8 4.1326 1.4958 1.1192 7 7 2.3683 1.3333 2.4546 8 6 3.2106 1.4104 3.6507 9 1 4.1578 0.9054 3.4613 10 6 3.4749 2.8776 3.9947 11 6 2.4966 0.7326 4.8218 12 7 2.1363 -0.6413 4.4467 13 6 1.4468 -1.3244 5.5493 14 6 1.0942 -2.7279 5.1286 15 8 1.3881 -3.1203 4.0192 16 7 0.4515 -3.5468 5.9847 17 6 0.1313 -4.8237 5.6021 18 1 0.3937 -5.1734 4.6145 19 6 -0.5309 -5.6681 6.4850 20 7 -0.8382 -6.8919 6.1180 21 14 -0.9853 -5.0630 8.1928 22 1 -2.3366 -4.4482 8.1568 23 1 -0.9872 -6.2074 9.1392 24 1 0.0066 -4.0524 8.6402 25 6 2.9300 1.3848 -1.2305 26 6 3.9128 0.4370 -1.4463 27 6 4.7050 0.5080 -2.5770 28 6 4.5197 1.5313 -3.4877 29 6 3.5402 2.4821 -3.2692 30 6 2.7456 2.4090 -2.1405 31 1 -0.5400 -0.9353 -0.0044 32 1 -0.5399 0.9354 0.0045 33 1 1.8500 -0.9354 -0.0045 34 1 1.4065 1.2444 2.5436 35 1 3.9836 3.3605 3.1604 36 1 2.5277 3.3826 4.1841 37 1 4.1020 2.9350 4.8844 38 1 3.1584 0.7110 5.6876 39 1 1.5934 1.2905 5.0687 40 1 2.9495 -1.1605 4.1514 41 1 2.1009 -1.3601 6.4204 42 1 0.5362 -0.7805 5.8008 43 1 0.2162 -3.2327 6.8718 44 1 -1.3001 -7.4815 6.7345 45 1 4.0601 -0.3603 -0.7330 46 1 5.4705 -0.2346 -2.7475 47 1 5.1403 1.5883 -4.3697 48 1 3.3957 3.2818 -3.9804 49 1 1.9801 3.1515 -1.9700 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669749951.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:35 Heat of formation + Delta-G solvation = -24.305384 kcal Electronic energy + Delta-G solvation = -29579.770347 eV Core-core repulsion = 25507.181085 eV Total energy + Delta-G solvation = -4072.589262 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.44409 -38.94812 -38.46168 -36.74375 -35.18746 -34.34849 -33.71606 -31.69105 -31.26936 -31.01154 -30.90686 -27.78435 -27.18211 -25.05252 -23.22359 -22.79669 -22.33947 -21.31018 -20.62255 -19.69601 -19.39511 -18.38590 -17.30505 -17.12619 -16.60933 -15.91762 -15.47310 -15.38750 -15.19699 -14.91389 -14.74778 -14.45489 -14.23852 -14.02828 -13.82439 -13.47356 -13.33812 -13.22617 -13.17049 -12.72253 -12.69646 -12.48897 -12.33860 -12.25193 -12.09958 -11.74794 -11.71440 -11.48712 -11.20105 -11.18017 -11.02345 -10.91169 -10.62370 -10.17873 -10.00298 -9.59883 -9.31759 -9.04135 -8.92675 -8.78737 -8.62875 -8.23933 -8.19046 -6.33586 -3.85078 1.23690 1.37157 2.17160 2.69371 2.99623 3.04152 3.12638 3.16472 3.71022 3.77394 4.00356 4.07949 4.57101 4.60000 4.68783 4.80542 4.85223 4.91538 4.93189 4.99016 5.05873 5.07382 5.17626 5.23454 5.33734 5.36269 5.43079 5.50057 5.53327 5.56835 5.58551 5.75791 5.83919 5.87678 5.88655 5.92201 5.98368 6.01089 6.35866 6.44807 6.49264 6.50754 6.55759 6.64273 6.92856 6.99994 7.48004 7.55362 7.56659 8.11819 8.26348 8.57030 8.92471 9.39770 9.79906 10.79529 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014451 B = 0.002271 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.052282 B =12327.706731 C =13488.394242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.146 4.146 3 C -0.038 4.038 4 H 0.103 0.897 5 C 0.525 3.475 6 O -0.538 6.538 7 N -0.704 5.704 8 C 0.145 3.855 9 H 0.086 0.914 10 C -0.161 4.161 11 C 0.048 3.952 12 N -0.665 5.665 13 C 0.048 3.952 14 C 0.450 3.550 15 O -0.563 6.563 16 N -0.591 5.591 17 C -0.305 4.305 18 H 0.119 0.881 19 C 0.041 3.959 20 N -0.881 5.881 21 Si 0.880 3.120 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.270 1.270 25 C -0.060 4.060 26 C -0.079 4.079 27 C -0.122 4.122 28 C -0.122 4.122 29 C -0.126 4.126 30 C -0.113 4.113 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.406 0.594 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.043 0.957 39 H 0.077 0.923 40 H 0.352 0.648 41 H 0.044 0.956 42 H 0.087 0.913 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.121 0.879 46 H 0.121 0.879 47 H 0.118 0.882 48 H 0.119 0.881 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.510 22.380 -9.290 24.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C -0.059 4.059 4 H 0.121 0.879 5 C 0.311 3.689 6 O -0.415 6.415 7 N -0.355 5.355 8 C 0.040 3.960 9 H 0.104 0.896 10 C -0.220 4.220 11 C -0.082 4.082 12 N -0.298 5.298 13 C -0.085 4.085 14 C 0.235 3.765 15 O -0.445 6.445 16 N -0.230 5.230 17 C -0.433 4.433 18 H 0.137 0.863 19 C -0.162 4.162 20 N -0.521 5.521 21 Si 0.707 3.293 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.196 1.196 25 C -0.060 4.060 26 C -0.098 4.098 27 C -0.140 4.140 28 C -0.140 4.140 29 C -0.144 4.144 30 C -0.131 4.131 31 H 0.126 0.874 32 H 0.114 0.886 33 H 0.136 0.864 34 H 0.241 0.759 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.095 0.905 40 H 0.172 0.828 41 H 0.062 0.938 42 H 0.105 0.895 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.139 0.861 46 H 0.139 0.861 47 H 0.136 0.864 48 H 0.137 0.863 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.898 22.149 -10.365 25.156 hybrid contribution -0.239 0.024 2.238 2.251 sum 5.660 22.173 -8.127 24.284 Atomic orbital electron populations 1.23913 0.95476 1.02370 0.98934 1.22568 0.95842 0.96482 1.01515 1.19453 0.96556 0.98604 0.91293 0.87896 1.20236 0.88526 0.75790 0.84372 1.90706 1.14799 1.49313 1.86637 1.45770 1.11259 1.73835 1.04619 1.20921 0.94926 0.95770 0.84364 0.89594 1.22139 1.01919 0.95857 1.02059 1.22313 0.99615 0.90782 0.95485 1.60041 1.31887 1.01638 1.36208 1.21710 0.99449 0.94837 0.92495 1.19693 0.83861 0.86469 0.86464 1.90571 1.56746 1.76184 1.20970 1.42212 1.53175 1.13422 1.14223 1.19421 1.34794 0.86087 1.03038 0.86306 1.25047 0.97367 0.95407 0.98392 1.69623 1.40053 1.05990 1.36422 0.86666 0.79282 0.79011 0.84367 1.19601 1.20193 1.19575 1.19214 0.96481 0.95740 0.94598 1.20962 0.94079 0.98244 0.96473 1.21135 0.99644 0.98656 0.94600 1.21121 0.98346 0.95167 0.99353 1.21027 0.96453 0.99252 0.97651 1.20956 0.99840 0.97697 0.94629 0.87433 0.88585 0.86352 0.75924 0.91875 0.92355 0.91672 0.93918 0.90468 0.82827 0.93794 0.89496 0.79731 0.91603 0.86118 0.86144 0.86366 0.86275 0.86340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 14.32 29.01 0.42 -1.31 16 2 C -0.15 -1.64 8.19 -36.03 -0.30 -1.94 16 3 C -0.04 -0.41 2.67 -94.08 -0.25 -0.66 16 4 H 0.10 0.88 7.52 -51.93 -0.39 0.49 16 5 C 0.53 6.61 6.97 -10.99 -0.08 6.54 16 6 O -0.54 -8.48 14.75 5.55 0.08 -8.40 16 7 N -0.70 -7.69 4.70 -53.81 -0.25 -7.94 16 8 C 0.15 1.52 2.81 -67.93 -0.19 1.33 16 9 H 0.09 1.07 7.58 -51.93 -0.39 0.68 16 10 C -0.16 -1.41 9.48 37.16 0.35 -1.06 16 11 C 0.05 0.49 5.24 -3.83 -0.02 0.47 16 12 N -0.67 -9.36 5.85 -115.07 -0.67 -10.03 16 13 C 0.05 0.74 6.17 -4.98 -0.03 0.71 16 14 C 0.45 9.84 7.82 -10.99 -0.09 9.75 16 15 O -0.56 -14.67 15.78 5.55 0.09 -14.59 16 16 N -0.59 -13.73 5.09 -10.96 -0.06 -13.79 16 17 C -0.30 -8.50 10.16 -14.93 -0.15 -8.65 16 18 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 19 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 20 N -0.88 -25.53 13.96 55.50 0.77 -24.76 16 21 Si 0.88 19.09 27.74 -169.99 -4.71 14.37 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 24 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 25 C -0.06 -0.70 4.39 -104.62 -0.46 -1.16 16 26 C -0.08 -0.99 8.03 -39.58 -0.32 -1.31 16 27 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 28 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 29 C -0.13 -1.20 10.05 -39.58 -0.40 -1.60 16 30 C -0.11 -1.16 9.67 -39.58 -0.38 -1.54 16 31 H 0.11 1.16 8.06 -52.49 -0.42 0.73 16 32 H 0.10 0.78 7.83 -52.49 -0.41 0.36 16 33 H 0.12 1.52 8.04 -52.48 -0.42 1.10 16 34 H 0.41 4.09 8.49 -40.82 -0.35 3.74 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.35 5.52 8.43 -39.29 -0.33 5.19 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.37 7.53 5.76 -40.82 -0.24 7.30 16 44 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 45 H 0.12 1.59 7.96 -52.49 -0.42 1.17 16 46 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 47 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 48 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 49 H 0.12 0.95 7.95 -52.48 -0.42 0.53 16 LS Contribution 414.65 15.07 6.25 6.25 Total: -1.00 -33.95 414.65 -8.86 -42.81 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: -7.57 Total: 18.84 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -2.78 Total: -2.77 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.21 Total: -56.52 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: 0.17 Total: -22.98 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -4.71 Total: 14.37 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.95 -8.86 -42.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669749951.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.506 kcal (2) G-P(sol) polarization free energy of solvation -33.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds