Wall clock time and date at job start Wed Apr 1 2020 03:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 120.00164 * 2 1 4 4 H 1.09001 * 109.47102 * 359.97438 * 3 2 1 5 5 C 1.50693 * 109.47248 * 119.99973 * 3 2 1 6 6 O 1.21284 * 120.00253 * 120.00271 * 5 3 2 7 7 N 1.34783 * 119.99935 * 299.99472 * 5 3 2 8 8 C 1.46497 * 119.99929 * 179.97438 * 7 5 3 9 9 H 1.08999 * 109.47329 * 325.00706 * 8 7 5 10 10 C 1.53003 * 109.46983 * 85.00203 * 8 7 5 11 11 C 1.52995 * 109.47448 * 205.00330 * 8 7 5 12 12 N 1.46900 * 109.47102 * 55.00083 * 11 8 7 13 13 C 1.46893 * 111.00478 * 180.02562 * 12 11 8 14 14 C 1.50697 * 109.47668 * 180.02562 * 13 12 11 15 15 O 1.21291 * 119.99731 * 359.97438 * 14 13 12 16 16 N 1.34779 * 120.00591 * 180.02562 * 14 13 12 17 17 C 1.37097 * 120.00428 * 180.02562 * 16 14 13 18 18 H 1.08000 * 119.99700 * 359.97438 * 17 16 14 19 19 C 1.38953 * 119.99938 * 179.97438 * 17 16 14 20 20 N 1.31409 * 119.99517 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00108 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47018 * 89.99628 * 21 19 17 23 23 H 1.48497 * 109.47216 * 209.99917 * 21 19 17 24 24 H 1.48508 * 109.47158 * 329.99929 * 21 19 17 25 25 C 1.50700 * 109.46878 * 239.99914 * 3 2 1 26 26 C 1.38233 * 119.99793 * 299.72757 * 25 3 2 27 27 C 1.38244 * 119.99785 * 179.81229 * 26 25 3 28 28 C 1.38234 * 119.99733 * 0.39343 * 27 26 25 29 29 C 1.38241 * 120.00135 * 359.85603 * 28 27 26 30 30 C 1.38226 * 120.00094 * 359.95876 * 29 28 27 31 31 H 1.07999 * 120.00108 * 179.72930 * 1 2 3 32 32 H 1.08000 * 119.99390 * 359.72719 * 1 2 3 33 33 H 1.08005 * 119.99846 * 180.27284 * 2 1 3 34 34 H 0.96999 * 120.00074 * 0.02562 * 7 5 3 35 35 H 1.08996 * 109.47306 * 300.00229 * 10 8 7 36 36 H 1.08999 * 109.46678 * 60.00103 * 10 8 7 37 37 H 1.09004 * 109.47084 * 180.02562 * 10 8 7 38 38 H 1.08995 * 109.47791 * 174.99872 * 11 8 7 39 39 H 1.08998 * 109.47043 * 295.00590 * 11 8 7 40 40 H 1.00906 * 110.99857 * 56.04688 * 12 11 8 41 41 H 1.09000 * 109.47347 * 300.00407 * 13 12 11 42 42 H 1.09004 * 109.46813 * 59.99782 * 13 12 11 43 43 H 0.97006 * 119.99137 * 359.97438 * 16 14 13 44 44 H 0.97004 * 119.99636 * 179.97438 * 20 19 17 45 45 H 1.07997 * 120.00258 * 359.97438 * 26 25 3 46 46 H 1.08001 * 119.99972 * 180.22778 * 27 26 25 47 47 H 1.07999 * 119.99873 * 179.83498 * 28 27 26 48 48 H 1.08000 * 119.99816 * 179.97438 * 29 28 27 49 49 H 1.08004 * 120.00093 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3553 2.1336 -0.0005 5 6 2.9300 1.3849 1.2304 6 8 4.1326 1.4958 1.1192 7 7 2.3683 1.3333 2.4546 8 6 3.2106 1.4104 3.6507 9 1 4.1578 0.9054 3.4613 10 6 3.4749 2.8776 3.9947 11 6 2.4966 0.7326 4.8218 12 7 2.1363 -0.6413 4.4467 13 6 1.4468 -1.3244 5.5493 14 6 1.0942 -2.7279 5.1286 15 8 1.3881 -3.1203 4.0192 16 7 0.4515 -3.5468 5.9847 17 6 0.1313 -4.8237 5.6021 18 1 0.3937 -5.1734 4.6145 19 6 -0.5309 -5.6681 6.4850 20 7 -0.8382 -6.8919 6.1180 21 14 -0.9853 -5.0630 8.1928 22 1 -2.3366 -4.4482 8.1568 23 1 -0.9872 -6.2074 9.1392 24 1 0.0066 -4.0524 8.6402 25 6 2.9300 1.3848 -1.2305 26 6 3.9128 0.4370 -1.4463 27 6 4.7050 0.5080 -2.5770 28 6 4.5197 1.5313 -3.4877 29 6 3.5402 2.4821 -3.2692 30 6 2.7456 2.4090 -2.1405 31 1 -0.5400 -0.9353 -0.0044 32 1 -0.5399 0.9354 0.0045 33 1 1.8500 -0.9354 -0.0045 34 1 1.4065 1.2444 2.5436 35 1 3.9836 3.3605 3.1604 36 1 2.5277 3.3826 4.1841 37 1 4.1020 2.9350 4.8844 38 1 3.1584 0.7110 5.6876 39 1 1.5934 1.2905 5.0687 40 1 2.9495 -1.1605 4.1514 41 1 2.1009 -1.3601 6.4204 42 1 0.5362 -0.7805 5.8008 43 1 0.2162 -3.2327 6.8718 44 1 -1.3001 -7.4815 6.7345 45 1 4.0601 -0.3603 -0.7330 46 1 5.4705 -0.2346 -2.7475 47 1 5.1403 1.5883 -4.3697 48 1 3.3957 3.2818 -3.9804 49 1 1.9801 3.1515 -1.9700 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669749951.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:34 Heat of formation + Delta-G solvation = -49.329792 kcal Electronic energy + Delta-G solvation = -29580.855487 eV Core-core repulsion = 25507.181085 eV Total energy + Delta-G solvation = -4073.674402 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.35993 -40.30081 -39.70309 -37.78609 -36.09946 -36.05230 -35.08654 -33.73181 -32.09366 -31.91371 -31.72630 -29.08255 -28.01719 -26.61010 -24.53631 -23.61516 -23.20042 -22.15212 -21.56454 -21.23854 -20.57384 -20.23948 -18.29365 -18.06540 -17.67636 -17.37034 -16.77309 -16.47240 -16.28271 -16.10865 -15.82628 -15.50906 -15.45434 -15.14134 -14.93926 -14.77256 -14.47744 -14.30018 -14.23342 -14.10468 -13.94434 -13.51414 -13.30287 -13.21343 -13.13220 -12.98609 -12.79786 -12.67717 -12.40829 -12.31331 -11.98460 -11.97930 -11.84855 -11.75076 -11.50423 -11.14836 -10.43380 -10.24177 -10.23366 -9.94778 -9.75581 -9.60768 -9.33220 -8.40940 -6.01828 0.42348 0.54914 1.28636 1.30227 1.36251 1.44976 1.73638 1.97765 2.23449 2.30325 2.72643 2.95647 3.15583 3.40244 3.74187 3.78401 3.83212 4.02712 4.07182 4.15176 4.19011 4.19604 4.25138 4.29984 4.39617 4.48573 4.53647 4.58535 4.65731 4.66621 4.77580 4.78099 4.81412 5.02353 5.05691 5.12464 5.17725 5.28922 5.52887 5.56879 5.60222 5.63613 5.64417 5.70166 5.79576 5.90228 6.04102 6.14369 6.29635 6.60327 6.66012 6.89223 7.33877 7.40959 7.98413 8.76860 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014451 B = 0.002271 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.052282 B =12327.706731 C =13488.394242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.160 4.160 3 C -0.028 4.028 4 H 0.133 0.867 5 C 0.520 3.480 6 O -0.577 6.577 7 N -0.696 5.696 8 C 0.144 3.856 9 H 0.058 0.942 10 C -0.151 4.151 11 C 0.056 3.944 12 N -0.681 5.681 13 C 0.063 3.937 14 C 0.448 3.552 15 O -0.614 6.614 16 N -0.592 5.592 17 C -0.327 4.327 18 H 0.053 0.947 19 C -0.018 4.018 20 N -0.936 5.936 21 Si 0.967 3.033 22 H -0.256 1.256 23 H -0.277 1.277 24 H -0.230 1.230 25 C -0.076 4.076 26 C -0.107 4.107 27 C -0.138 4.138 28 C -0.126 4.126 29 C -0.127 4.127 30 C -0.118 4.118 31 H 0.096 0.904 32 H 0.128 0.872 33 H 0.087 0.913 34 H 0.412 0.588 35 H 0.043 0.957 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.102 0.898 40 H 0.338 0.662 41 H 0.075 0.925 42 H 0.121 0.879 43 H 0.390 0.610 44 H 0.279 0.721 45 H 0.095 0.905 46 H 0.128 0.872 47 H 0.143 0.857 48 H 0.149 0.851 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.218 26.554 -7.069 27.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.178 4.178 3 C -0.049 4.049 4 H 0.151 0.849 5 C 0.307 3.693 6 O -0.457 6.457 7 N -0.347 5.347 8 C 0.039 3.961 9 H 0.076 0.924 10 C -0.209 4.209 11 C -0.073 4.073 12 N -0.313 5.313 13 C -0.069 4.069 14 C 0.236 3.764 15 O -0.498 6.498 16 N -0.234 5.234 17 C -0.456 4.456 18 H 0.071 0.929 19 C -0.216 4.216 20 N -0.577 5.577 21 Si 0.787 3.213 22 H -0.180 1.180 23 H -0.203 1.203 24 H -0.153 1.153 25 C -0.076 4.076 26 C -0.125 4.125 27 C -0.156 4.156 28 C -0.144 4.144 29 C -0.144 4.144 30 C -0.136 4.136 31 H 0.115 0.885 32 H 0.146 0.854 33 H 0.105 0.895 34 H 0.248 0.752 35 H 0.062 0.938 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.120 0.880 40 H 0.156 0.844 41 H 0.093 0.907 42 H 0.139 0.861 43 H 0.225 0.775 44 H 0.088 0.912 45 H 0.114 0.886 46 H 0.146 0.854 47 H 0.161 0.839 48 H 0.167 0.833 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.595 26.361 -8.124 27.964 hybrid contribution 0.219 -1.325 1.385 1.929 sum 4.814 25.036 -6.739 26.370 Atomic orbital electron populations 1.24065 0.94909 1.03347 0.97033 1.22399 0.96252 0.95871 1.03320 1.19415 0.96436 0.98930 0.90100 0.84919 1.20614 0.88241 0.75111 0.85353 1.90683 1.16507 1.51247 1.87219 1.45769 1.11592 1.72866 1.04437 1.20969 0.93800 0.96961 0.84378 0.92376 1.22044 1.02966 0.94050 1.01888 1.22377 1.01029 0.88337 0.95592 1.60050 1.31645 1.03142 1.36436 1.21641 1.01645 0.90190 0.93422 1.21063 0.81394 0.88678 0.85302 1.90559 1.58031 1.77838 1.23404 1.42033 1.53948 1.11927 1.15453 1.18980 1.36626 0.88856 1.01184 0.92916 1.26154 0.96319 0.95051 1.04096 1.69815 1.41079 1.07957 1.38835 0.85339 0.80307 0.79317 0.76371 1.18000 1.20261 1.15337 1.19420 0.96570 0.96151 0.95499 1.20956 0.95835 0.98665 0.97031 1.21345 0.99871 0.99705 0.94699 1.21457 0.98720 0.94545 0.99671 1.21449 0.95581 0.99582 0.97820 1.21309 1.00475 0.97523 0.94321 0.88523 0.85414 0.89462 0.75189 0.93798 0.90472 0.90115 0.91959 0.88025 0.84419 0.90673 0.86122 0.77454 0.91200 0.88631 0.85446 0.83912 0.83294 0.83685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 14.32 67.78 0.97 -2.14 16 2 C -0.16 -3.77 8.19 25.64 0.21 -3.56 16 3 C -0.03 -0.60 2.67 -13.03 -0.03 -0.63 16 4 H 0.13 1.97 7.52 -2.39 -0.02 1.95 16 5 C 0.52 13.43 6.97 87.65 0.61 14.04 16 6 O -0.58 -19.22 14.75 -3.04 -0.04 -19.27 16 7 N -0.70 -14.75 4.70 -442.54 -2.08 -16.83 16 8 C 0.14 2.84 2.81 44.99 0.13 2.97 16 9 H 0.06 1.49 7.58 -2.39 -0.02 1.47 16 10 C -0.15 -2.30 9.48 71.98 0.68 -1.62 16 11 C 0.06 0.96 5.24 86.30 0.45 1.41 16 12 N -0.68 -18.02 5.85 -517.97 -3.03 -21.05 16 13 C 0.06 1.74 6.17 85.56 0.53 2.27 16 14 C 0.45 19.49 7.82 87.66 0.69 20.18 16 15 O -0.61 -33.50 15.78 -3.06 -0.05 -33.55 16 16 N -0.59 -27.18 5.09 -306.98 -1.56 -28.74 16 17 C -0.33 -19.02 10.16 84.04 0.85 -18.16 16 18 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 19 C -0.02 -0.98 5.50 84.93 0.47 -0.52 16 20 N -0.94 -56.39 13.96 21.66 0.30 -56.09 16 21 Si 0.97 38.12 27.74 68.60 1.90 40.03 16 22 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 23 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 24 H -0.23 -7.52 6.52 99.48 0.65 -6.88 16 25 C -0.08 -1.81 4.39 -19.86 -0.09 -1.90 16 26 C -0.11 -2.91 8.03 22.27 0.18 -2.73 16 27 C -0.14 -3.23 10.05 22.27 0.22 -3.00 16 28 C -0.13 -2.38 10.05 22.27 0.22 -2.16 16 29 C -0.13 -2.18 10.05 22.27 0.22 -1.96 16 30 C -0.12 -2.25 9.67 22.27 0.22 -2.04 16 31 H 0.10 2.13 8.06 -2.91 -0.02 2.10 16 32 H 0.13 1.71 7.83 -2.91 -0.02 1.69 16 33 H 0.09 2.56 8.04 -2.91 -0.02 2.54 16 34 H 0.41 7.63 8.49 -92.71 -0.79 6.84 16 35 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.34 10.66 8.43 -89.69 -0.76 9.90 16 41 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.12 2.61 8.14 -2.38 -0.02 2.59 16 43 H 0.39 14.63 5.76 -92.70 -0.53 14.09 16 44 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 45 H 0.10 2.95 7.96 -2.91 -0.02 2.93 16 46 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 47 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 48 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 49 H 0.15 1.89 7.95 -2.91 -0.02 1.86 16 Total: -1.00 -83.03 414.65 0.81 -82.22 By element: Atomic # 1 Polarization: 54.00 SS G_CDS: -1.17 Total: 52.84 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: 6.53 Total: 0.44 kcal Atomic # 7 Polarization: -116.34 SS G_CDS: -6.37 Total: -122.71 kcal Atomic # 8 Polarization: -52.72 SS G_CDS: -0.09 Total: -52.82 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 1.90 Total: 40.03 kcal Total: -83.03 0.81 -82.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669749951.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.894 kcal (2) G-P(sol) polarization free energy of solvation -83.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds