Wall clock time and date at job start Wed Apr 1 2020 02:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47141 * 2 1 4 4 C 1.50697 * 109.47380 * 120.00075 * 2 1 3 5 5 O 1.21282 * 120.00064 * 119.99597 * 4 2 1 6 6 N 1.34782 * 119.99847 * 300.00467 * 4 2 1 7 7 C 1.46494 * 119.99645 * 179.97438 * 6 4 2 8 8 C 1.50700 * 109.47125 * 179.97438 * 7 6 4 9 9 C 1.38233 * 120.00034 * 90.00260 * 8 7 6 10 10 C 1.38232 * 120.00431 * 180.02562 * 9 8 7 11 11 C 1.38236 * 119.99824 * 359.97438 * 10 9 8 12 12 C 1.50700 * 120.00251 * 179.97438 * 11 10 9 13 13 N 1.46498 * 109.46769 * 90.00266 * 12 11 10 14 14 C 1.36943 * 119.99752 * 179.72432 * 13 12 11 15 15 H 1.08002 * 119.99793 * 0.27665 * 14 13 12 16 16 C 1.38811 * 120.00012 * 180.27737 * 14 13 12 17 17 N 1.31611 * 120.00081 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99814 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47483 * 90.00178 * 18 16 14 20 20 H 1.48498 * 109.47011 * 210.00042 * 18 16 14 21 21 H 1.48502 * 109.47495 * 329.99664 * 18 16 14 22 22 C 1.38237 * 119.99834 * 0.26431 * 11 10 9 23 23 C 1.38234 * 120.00010 * 359.48806 * 22 11 10 24 24 C 1.53003 * 109.47284 * 240.00515 * 2 1 3 25 25 H 1.09002 * 110.21746 * 185.70370 * 24 2 1 26 26 C 1.54476 * 110.24494 * 63.76849 * 24 2 1 27 27 C 1.54628 * 101.76501 * 215.58390 * 26 24 2 28 28 C 1.51284 * 104.19478 * 24.80049 * 27 26 24 29 29 O 1.21280 * 124.94415 * 163.72741 * 28 27 26 30 30 N 1.34567 * 110.13932 * 343.67306 * 28 27 26 31 31 H 1.08998 * 109.47150 * 300.00040 * 1 2 3 32 32 H 1.09006 * 109.46571 * 59.99735 * 1 2 3 33 33 H 1.08991 * 109.47304 * 179.97438 * 1 2 3 34 34 H 0.97000 * 119.99832 * 359.97438 * 6 4 2 35 35 H 1.09002 * 109.47371 * 60.00287 * 7 6 4 36 36 H 1.08998 * 109.47683 * 299.99949 * 7 6 4 37 37 H 1.08003 * 119.99910 * 359.97438 * 9 8 7 38 38 H 1.08002 * 120.00459 * 179.97438 * 10 9 8 39 39 H 1.09004 * 109.47210 * 330.00623 * 12 11 10 40 40 H 1.08994 * 109.47121 * 210.00593 * 12 11 10 41 41 H 0.97001 * 120.00384 * 0.02562 * 13 12 11 42 42 H 0.97008 * 120.00329 * 179.97438 * 17 16 14 43 43 H 1.08000 * 119.99739 * 179.72353 * 22 11 10 44 44 H 1.08001 * 120.00122 * 180.23790 * 23 22 11 45 45 H 1.08997 * 110.97443 * 333.70539 * 26 24 2 46 46 H 1.09001 * 110.97051 * 97.43551 * 26 24 2 47 47 H 1.09004 * 110.48911 * 143.47524 * 27 26 24 48 48 H 1.09003 * 110.49453 * 266.12502 * 27 26 24 49 49 H 0.96999 * 124.43403 * 179.63588 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7067 -0.2500 2.4546 7 6 2.1946 -0.9409 3.6506 8 6 1.6929 -0.2302 4.8811 9 6 0.4849 -0.5948 5.4456 10 6 0.0243 0.0574 6.5740 11 6 0.7721 1.0740 7.1383 12 6 0.2698 1.7855 8.3682 13 7 0.7568 1.0949 9.5649 14 6 0.4305 1.5670 10.8083 15 1 -0.1897 2.4457 10.9066 16 6 0.8967 0.9160 11.9422 17 7 0.5827 1.3694 13.1371 18 14 1.9699 -0.6034 11.7720 19 1 3.3976 -0.1980 11.7208 20 1 1.7507 -1.4973 12.9374 21 1 1.6145 -1.3231 10.5226 22 6 1.9778 1.4419 6.5710 23 6 2.4407 0.7862 5.4456 24 6 2.0400 -0.7211 -1.2493 25 1 3.1252 -0.8171 -1.2122 26 6 1.6143 0.0461 -2.5207 27 6 1.3450 -1.1102 -3.5114 28 6 1.0202 -2.2913 -2.6236 29 8 0.4817 -3.3124 -2.9954 30 7 1.4167 -2.0451 -1.3615 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.1493 0.5389 2.5435 35 1 3.2847 -0.9412 3.6508 36 1 1.8310 -1.9685 3.6505 37 1 -0.0996 -1.3887 5.0045 38 1 -0.9197 -0.2271 7.0148 39 1 -0.8203 1.7865 8.3676 40 1 0.6340 2.8127 8.3678 41 1 1.3141 0.3059 9.4766 42 1 0.9082 0.9143 13.9296 43 1 2.5598 2.2391 7.0093 44 1 3.3846 1.0711 5.0046 45 1 0.7085 0.6254 -2.3418 46 1 2.4205 0.6868 -2.8780 47 1 0.4977 -0.8720 -4.1545 48 1 2.2331 -1.3152 -4.1092 49 1 1.3044 -2.6617 -0.6211 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698716402.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:29 Heat of formation + Delta-G solvation = -41.671960 kcal Electronic energy + Delta-G solvation = -28850.258843 eV Core-core repulsion = 24776.916510 eV Total energy + Delta-G solvation = -4073.342333 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.30132 -39.99712 -39.26791 -37.18210 -35.76668 -34.61344 -33.51111 -32.07815 -31.73392 -30.92551 -30.57716 -27.72518 -27.37260 -25.21311 -24.11753 -22.69634 -22.17708 -21.76637 -21.03879 -20.71734 -20.28066 -17.90117 -17.73163 -17.44171 -17.17772 -16.42518 -15.99676 -15.62864 -15.28049 -15.16070 -14.97954 -14.67030 -14.42025 -14.33017 -14.06852 -13.87441 -13.70528 -13.42120 -13.19322 -13.06445 -13.04595 -12.79034 -12.52967 -12.43622 -12.29646 -12.11090 -12.05780 -11.78097 -11.54052 -11.44435 -11.02588 -10.86921 -10.70970 -10.28278 -10.22650 -10.17853 -9.65690 -9.50171 -9.46972 -8.98151 -8.89942 -8.66188 -7.31266 -5.82715 -3.19276 1.17750 1.42901 2.17523 2.23723 2.79774 2.98110 3.34293 3.38285 3.42234 3.72736 3.79553 3.87377 4.06355 4.24367 4.39093 4.47524 4.52151 4.54503 4.57192 4.74657 4.77125 4.98801 5.04687 5.07776 5.13800 5.13972 5.15371 5.18190 5.33771 5.41427 5.43738 5.46946 5.53156 5.61155 5.65450 5.66804 5.95941 5.97527 5.98813 6.29750 6.41566 6.42712 6.43984 6.49091 6.69272 6.89837 7.00435 7.07098 7.75634 7.89884 7.91912 8.35788 9.14140 9.86380 10.05859 11.35263 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.029629 B = 0.001644 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.797924 B =17023.317591 C =17251.445525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 H 0.114 0.886 4 C 0.514 3.486 5 O -0.540 6.540 6 N -0.720 5.720 7 C 0.165 3.835 8 C -0.125 4.125 9 C -0.103 4.103 10 C -0.107 4.107 11 C -0.070 4.070 12 C 0.189 3.811 13 N -0.750 5.750 14 C -0.249 4.249 15 H 0.091 0.909 16 C 0.008 3.992 17 N -0.932 5.932 18 Si 0.883 3.117 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.277 1.277 22 C -0.108 4.108 23 C -0.104 4.104 24 C 0.150 3.850 25 H 0.091 0.909 26 C -0.133 4.133 27 C -0.156 4.156 28 C 0.516 3.484 29 O -0.539 6.539 30 N -0.716 5.716 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.403 0.597 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.363 0.637 42 H 0.260 0.740 43 H 0.126 0.874 44 H 0.120 0.880 45 H 0.089 0.911 46 H 0.093 0.907 47 H 0.102 0.898 48 H 0.105 0.895 49 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.470 1.051 -33.866 33.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.144 4.144 3 H 0.132 0.868 4 C 0.300 3.700 5 O -0.417 6.417 6 N -0.372 5.372 7 C 0.042 3.958 8 C -0.125 4.125 9 C -0.122 4.122 10 C -0.126 4.126 11 C -0.070 4.070 12 C 0.062 3.938 13 N -0.396 5.396 14 C -0.378 4.378 15 H 0.109 0.891 16 C -0.188 4.188 17 N -0.579 5.579 18 Si 0.713 3.287 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.203 1.203 22 C -0.126 4.126 23 C -0.122 4.122 24 C 0.044 3.956 25 H 0.109 0.891 26 C -0.170 4.170 27 C -0.196 4.196 28 C 0.302 3.698 29 O -0.416 6.416 30 N -0.372 5.372 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.238 0.762 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.138 0.862 38 H 0.144 0.856 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.196 0.804 42 H 0.070 0.930 43 H 0.144 0.856 44 H 0.138 0.862 45 H 0.107 0.893 46 H 0.112 0.888 47 H 0.120 0.880 48 H 0.123 0.877 49 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 2.605 0.009 -34.024 34.123 hybrid contribution 0.575 -0.903 0.706 1.283 sum 3.180 -0.894 -33.318 33.481 Atomic orbital electron populations 1.21825 0.92064 1.03409 1.03152 1.21707 0.98556 1.01434 0.92700 0.86776 1.20586 0.80070 0.84724 0.84617 1.90738 1.37914 1.26280 1.86774 1.46149 1.53551 1.32169 1.05288 1.20174 0.99240 0.95450 0.80922 1.19696 0.96306 0.98840 0.97696 1.21014 0.95411 0.99570 0.96209 1.21176 1.00408 0.95582 0.95400 1.20458 0.94317 0.95722 0.96542 1.19675 0.96991 0.94326 0.82775 1.42679 1.62468 1.32830 1.01611 1.19055 1.27052 1.10278 0.81441 0.89074 1.24652 1.00323 0.98825 0.95033 1.69695 1.49537 1.41902 0.96779 0.86568 0.81096 0.84031 0.76985 1.20986 1.21602 1.20296 1.21176 0.95804 1.00189 0.95461 1.21011 0.99327 0.95623 0.96253 1.21450 0.98286 0.82393 0.93469 0.89105 1.22797 1.03543 0.97302 0.93394 1.22348 1.04791 0.93928 0.98540 1.20932 0.77042 0.88217 0.83584 1.90768 1.43246 1.29952 1.77610 1.46337 1.60664 1.19078 1.11121 0.91556 0.90877 0.91718 0.76207 0.90638 0.90687 0.86237 0.85604 0.94542 0.94493 0.80446 0.92959 0.85568 0.86201 0.89270 0.88805 0.87961 0.87715 0.74589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 8.66 37.16 0.32 -0.22 16 2 C -0.12 -0.50 2.59 -91.77 -0.24 -0.73 16 3 H 0.11 0.21 8.14 -51.93 -0.42 -0.22 16 4 C 0.51 3.83 6.97 -10.98 -0.08 3.75 16 5 O -0.54 -6.02 14.95 5.56 0.08 -5.94 16 6 N -0.72 -4.92 5.44 -61.48 -0.33 -5.25 16 7 C 0.16 1.46 5.80 -5.20 -0.03 1.43 16 8 C -0.12 -1.28 5.25 -104.62 -0.55 -1.82 16 9 C -0.10 -1.15 9.70 -39.59 -0.38 -1.54 16 10 C -0.11 -1.45 9.70 -39.58 -0.38 -1.83 16 11 C -0.07 -1.05 5.25 -104.62 -0.55 -1.60 16 12 C 0.19 3.51 6.39 -5.19 -0.03 3.48 16 13 N -0.75 -17.57 5.40 -61.09 -0.33 -17.90 16 14 C -0.25 -6.95 10.47 -15.06 -0.16 -7.11 16 15 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 16 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 17 N -0.93 -28.98 13.97 55.49 0.78 -28.20 16 18 Si 0.88 22.08 27.74 -169.99 -4.71 17.36 16 19 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 20 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 21 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 22 C -0.11 -1.43 9.70 -39.58 -0.38 -1.82 16 23 C -0.10 -1.13 9.70 -39.58 -0.38 -1.52 16 24 C 0.15 0.72 2.72 -67.01 -0.18 0.54 16 25 H 0.09 0.50 7.95 -51.93 -0.41 0.09 16 26 C -0.13 -0.32 6.53 -25.10 -0.16 -0.48 16 27 C -0.16 -0.70 6.86 -26.74 -0.18 -0.88 16 28 C 0.52 4.63 8.43 -10.79 -0.09 4.54 16 29 O -0.54 -7.41 18.03 5.56 0.10 -7.31 16 30 N -0.72 -5.42 4.59 -52.73 -0.24 -5.66 16 31 H 0.07 0.20 7.56 -51.93 -0.39 -0.19 16 32 H 0.07 0.18 6.29 -51.93 -0.33 -0.15 16 33 H 0.06 0.36 7.45 -51.93 -0.39 -0.03 16 34 H 0.40 2.06 7.88 -40.82 -0.32 1.74 16 35 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 36 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 37 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 38 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.04 0.68 8.09 -51.93 -0.42 0.26 16 40 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 41 H 0.36 8.47 5.52 -40.82 -0.23 8.24 16 42 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 43 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 44 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 45 H 0.09 0.13 6.04 -51.93 -0.31 -0.19 16 46 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 47 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 49 H 0.41 3.72 8.00 -40.82 -0.33 3.39 16 LS Contribution 401.29 15.07 6.05 6.05 Total: -1.00 -35.99 401.29 -9.54 -45.53 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -7.36 Total: 7.00 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -3.56 Total: -5.69 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: -0.13 Total: -57.01 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.18 Total: -13.24 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.71 Total: 17.36 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.99 -9.54 -45.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698716402.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.862 kcal (2) G-P(sol) polarization free energy of solvation -35.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds