Wall clock time and date at job start Wed Apr 1 2020 04:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.46925 * 2 1 4 4 N 1.46499 * 109.47038 * 120.00381 * 2 1 3 5 5 C 1.34771 * 119.99813 * 274.99692 * 4 2 1 6 6 O 1.21556 * 120.00494 * 0.02562 * 5 4 2 7 7 C 1.47849 * 120.00038 * 180.02562 * 5 4 2 8 8 C 1.39580 * 120.14412 * 359.72374 * 7 5 4 9 9 C 1.37953 * 119.85205 * 179.78987 * 8 7 5 10 10 C 1.38362 * 120.14874 * 0.49005 * 9 8 7 11 11 C 1.38363 * 120.28883 * 359.73987 * 10 9 8 12 12 C 1.37956 * 120.14687 * 0.02668 * 11 10 9 13 13 C 1.50706 * 109.47004 * 240.00215 * 2 1 3 14 14 O 1.21281 * 119.99892 * 239.99751 * 13 2 1 15 15 N 1.34778 * 119.99637 * 59.99891 * 13 2 1 16 16 C 1.46507 * 119.99511 * 179.97438 * 15 13 2 17 17 C 1.52998 * 110.77923 * 56.76349 * 16 15 13 18 18 C 1.55149 * 110.71789 * 180.02562 * 16 15 13 19 19 C 1.54914 * 101.58448 * 82.86132 * 18 16 15 20 20 N 1.47426 * 104.83095 * 37.00937 * 19 18 16 21 21 C 1.36930 * 125.65089 * 155.90544 * 20 19 18 22 22 H 1.08006 * 119.99866 * 353.94788 * 21 20 19 23 23 C 1.38811 * 120.00143 * 173.93493 * 21 20 19 24 24 N 1.31614 * 120.00066 * 6.85636 * 23 21 20 25 25 Si 1.86802 * 120.00006 * 186.84825 * 23 21 20 26 26 H 1.48505 * 109.46848 * 94.98911 * 25 23 21 27 27 H 1.48498 * 109.47017 * 214.98992 * 25 23 21 28 28 H 1.48498 * 109.47210 * 334.99225 * 25 23 21 29 29 C 1.47027 * 108.70241 * 335.87222 * 20 19 18 30 30 H 1.09001 * 109.47212 * 59.99721 * 1 2 3 31 31 H 1.09003 * 109.47407 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46941 * 299.99881 * 1 2 3 33 33 H 0.97001 * 119.99812 * 95.00100 * 4 2 1 34 34 H 1.08005 * 120.07108 * 0.02562 * 8 7 5 35 35 H 1.08007 * 119.92776 * 180.23660 * 9 8 7 36 36 H 1.07995 * 119.85676 * 179.76509 * 10 9 8 37 37 H 1.07999 * 119.92798 * 179.97438 * 11 10 9 38 38 H 1.08000 * 120.07855 * 179.97438 * 12 11 10 39 39 H 0.96993 * 120.00523 * 0.02562 * 15 13 2 40 40 H 1.08995 * 109.47147 * 183.23513 * 17 16 15 41 41 H 1.09006 * 109.47167 * 303.23917 * 17 16 15 42 42 H 1.09002 * 109.47062 * 63.23802 * 17 16 15 43 43 H 1.08998 * 111.00756 * 324.78956 * 18 16 15 44 44 H 1.08999 * 111.00321 * 200.93656 * 18 16 15 45 45 H 1.08997 * 110.36886 * 155.84502 * 19 18 16 46 46 H 1.09001 * 110.36451 * 278.16892 * 19 18 16 47 47 H 0.97003 * 120.00218 * 179.97438 * 24 23 21 48 48 H 1.08997 * 109.88361 * 120.47406 * 29 20 19 49 49 H 1.09004 * 109.88426 * 241.49177 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3570 6 8 1.8576 1.1609 2.4119 7 6 2.6404 -0.7153 3.5641 8 6 2.9682 -2.0708 3.5061 9 6 3.4321 -2.7140 4.6349 10 6 3.5631 -2.0209 5.8252 11 6 3.2354 -0.6783 5.8907 12 6 2.7749 -0.0219 4.7681 13 6 2.0323 -0.7104 -1.2305 14 8 2.7296 -1.6965 -1.1193 15 7 1.7067 -0.2498 -2.4546 16 6 2.1955 -0.9401 -3.6508 17 6 1.7697 -2.4096 -3.6416 18 6 1.6948 -0.2311 -4.9368 19 6 2.7335 0.9081 -5.0885 20 7 4.0125 0.3119 -4.6616 21 6 5.2575 0.7395 -5.0384 22 1 5.3596 1.5184 -5.7796 23 6 6.3885 0.1720 -4.4676 24 7 6.2714 -0.8661 -3.6671 25 14 8.0768 0.8817 -4.8359 26 1 8.4533 1.8427 -3.7682 27 1 9.0748 -0.2167 -4.8878 28 1 8.0442 1.5832 -6.1443 29 6 3.7297 -0.8173 -3.7635 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2490 -1.6319 1.1525 34 1 2.8625 -2.6139 2.5785 35 1 3.6898 -3.7619 4.5904 36 1 3.9231 -2.5300 6.7070 37 1 3.3395 -0.1431 6.8230 38 1 2.5190 1.0260 4.8205 39 1 1.1493 0.5390 -2.5436 40 1 2.1919 -2.9157 -4.5097 41 1 2.1317 -2.8871 -2.7310 42 1 0.6821 -2.4730 -3.6774 43 1 0.6916 0.1712 -4.7958 44 1 1.7268 -0.9055 -5.7925 45 1 2.7937 1.2308 -6.1278 46 1 2.4725 1.7477 -4.4442 47 1 7.0617 -1.2629 -3.2685 48 1 4.1454 -1.7350 -4.1796 49 1 4.1618 -0.6269 -2.7810 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724185384.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:05 Heat of formation + Delta-G solvation = -38.662655 kcal Electronic energy + Delta-G solvation = -30700.803132 eV Core-core repulsion = 26627.591292 eV Total energy + Delta-G solvation = -4073.211840 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.78384 -40.95381 -39.42519 -38.82269 -36.16702 -35.67555 -33.96290 -32.99728 -31.93660 -31.80280 -30.57752 -29.92690 -27.69774 -26.10019 -25.48769 -24.52010 -23.45419 -22.28618 -21.84701 -21.38019 -20.47751 -19.63666 -18.84906 -17.88849 -17.68484 -17.18434 -16.79010 -16.45263 -16.30387 -15.98399 -15.85872 -15.60962 -15.48906 -15.12131 -14.74756 -14.63251 -14.35999 -14.23523 -14.06079 -13.91171 -13.53841 -13.42024 -13.36126 -13.32082 -13.06200 -12.81128 -12.75553 -12.67966 -12.58068 -12.17087 -12.04707 -11.98191 -11.89296 -11.75412 -11.51202 -11.17928 -10.81007 -10.65682 -10.32870 -9.99955 -9.97861 -9.92197 -8.88155 -7.85532 -5.21046 -0.18247 0.38985 1.40699 1.43292 1.52024 1.56422 1.70187 1.83373 2.35341 2.47262 2.87236 3.31739 3.47427 3.60320 3.72556 3.77278 3.87963 3.99051 3.99802 4.04721 4.11394 4.20349 4.22719 4.44612 4.50159 4.61503 4.63959 4.66651 4.76120 4.82942 4.84212 4.86851 5.03176 5.03469 5.08209 5.15337 5.19206 5.20283 5.32891 5.36808 5.42301 5.44539 5.48072 5.48729 5.75447 5.88344 5.92718 6.19440 6.34489 6.58001 7.01364 7.08042 7.26677 7.78820 8.42280 9.23188 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010767 B = 0.002992 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.847694 B = 9356.591918 C =10788.129258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.128 3.872 3 H 0.101 0.899 4 N -0.703 5.703 5 C 0.559 3.441 6 O -0.574 6.574 7 C -0.158 4.158 8 C -0.092 4.092 9 C -0.130 4.130 10 C -0.088 4.088 11 C -0.129 4.129 12 C -0.076 4.076 13 C 0.510 3.490 14 O -0.561 6.561 15 N -0.692 5.692 16 C 0.151 3.849 17 C -0.140 4.140 18 C -0.114 4.114 19 C 0.122 3.878 20 N -0.630 5.630 21 C -0.241 4.241 22 H 0.085 0.915 23 C -0.069 4.069 24 N -0.946 5.946 25 Si 0.973 3.027 26 H -0.292 1.292 27 H -0.296 1.296 28 H -0.262 1.262 29 C 0.196 3.804 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.412 0.588 34 H 0.132 0.868 35 H 0.154 0.846 36 H 0.160 0.840 37 H 0.156 0.844 38 H 0.128 0.872 39 H 0.413 0.587 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.083 0.917 43 H 0.117 0.883 44 H 0.087 0.913 45 H 0.048 0.952 46 H 0.029 0.971 47 H 0.242 0.758 48 H 0.002 0.998 49 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.761 -2.860 14.486 21.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.019 3.981 3 H 0.119 0.881 4 N -0.357 5.357 5 C 0.348 3.652 6 O -0.455 6.455 7 C -0.161 4.161 8 C -0.111 4.111 9 C -0.148 4.148 10 C -0.106 4.106 11 C -0.147 4.147 12 C -0.095 4.095 13 C 0.295 3.705 14 O -0.439 6.439 15 N -0.344 5.344 16 C 0.065 3.935 17 C -0.198 4.198 18 C -0.153 4.153 19 C -0.003 4.003 20 N -0.357 5.357 21 C -0.370 4.370 22 H 0.103 0.897 23 C -0.262 4.262 24 N -0.595 5.595 25 Si 0.802 3.198 26 H -0.220 1.220 27 H -0.223 1.223 28 H -0.186 1.186 29 C 0.070 3.930 30 H 0.117 0.883 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.251 0.749 34 H 0.149 0.851 35 H 0.171 0.829 36 H 0.178 0.822 37 H 0.173 0.827 38 H 0.146 0.854 39 H 0.250 0.750 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.102 0.898 43 H 0.135 0.865 44 H 0.105 0.895 45 H 0.067 0.933 46 H 0.047 0.953 47 H 0.051 0.949 48 H 0.020 0.980 49 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -15.279 -2.771 14.555 21.283 hybrid contribution 1.546 0.260 -0.366 1.610 sum -13.733 -2.511 14.189 19.905 Atomic orbital electron populations 1.22070 0.89853 1.03909 1.04544 1.20832 0.97672 0.97002 0.82581 0.88130 1.45685 1.66676 1.15014 1.08278 1.18663 0.76741 0.86093 0.83699 1.90723 1.52302 1.16723 1.85730 1.19915 1.06938 0.95442 0.93848 1.21559 0.96645 0.92838 1.00058 1.21500 0.99269 1.01720 0.92313 1.21829 0.95811 0.94223 0.98767 1.21494 0.99067 0.95454 0.98670 1.21409 0.96097 1.00395 0.91644 1.20756 0.79683 0.84580 0.85439 1.90689 1.38281 1.28124 1.86842 1.45704 1.52760 1.31769 1.04214 1.21509 0.93764 0.93325 0.84932 1.21920 1.01874 0.93609 1.02400 1.23026 0.99380 0.97381 0.95477 1.21859 0.85347 0.95095 0.97966 1.44839 1.01527 1.34412 1.54910 1.19466 0.83087 1.16298 1.18198 0.89731 1.25702 1.01676 0.98839 1.00011 1.70258 1.27964 1.24479 1.36796 0.85130 0.79622 0.77064 0.78007 1.21973 1.22282 1.18638 1.21129 0.90287 0.89054 0.92514 0.88320 0.90914 0.91269 0.74908 0.85065 0.82872 0.82234 0.82658 0.85422 0.75022 0.92441 0.92677 0.89779 0.86452 0.89470 0.93329 0.95349 0.94871 0.98013 0.97513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.38 71.98 0.68 -2.12 16 2 C 0.13 3.51 2.98 44.25 0.13 3.65 16 3 H 0.10 3.05 7.58 -2.39 -0.02 3.04 16 4 N -0.70 -20.03 4.90 -448.97 -2.20 -22.23 16 5 C 0.56 16.94 7.74 86.79 0.67 17.61 16 6 O -0.57 -20.41 16.01 -3.89 -0.06 -20.47 16 7 C -0.16 -4.04 5.87 -20.09 -0.12 -4.16 16 8 C -0.09 -1.95 9.54 22.53 0.21 -1.74 16 9 C -0.13 -2.09 10.03 22.23 0.22 -1.87 16 10 C -0.09 -1.21 10.04 22.33 0.22 -0.98 16 11 C -0.13 -2.06 10.03 22.23 0.22 -1.83 16 12 C -0.08 -1.72 9.60 22.53 0.22 -1.50 16 13 C 0.51 16.89 6.44 87.66 0.56 17.45 16 14 O -0.56 -23.18 12.81 -3.03 -0.04 -23.22 16 15 N -0.69 -20.64 5.04 -417.55 -2.10 -22.74 16 16 C 0.15 5.32 0.81 4.79 0.00 5.33 16 17 C -0.14 -4.48 8.43 71.98 0.61 -3.87 16 18 C -0.11 -3.29 6.07 31.99 0.19 -3.09 16 19 C 0.12 4.61 7.21 86.86 0.63 5.23 16 20 N -0.63 -32.63 3.39 -691.96 -2.35 -34.98 16 21 C -0.24 -13.87 10.26 84.03 0.86 -13.01 16 22 H 0.08 4.60 7.84 -2.91 -0.02 4.58 16 23 C -0.07 -4.12 5.48 84.86 0.47 -3.66 16 24 N -0.95 -60.62 10.36 21.65 0.22 -60.39 16 25 Si 0.97 47.84 29.56 68.60 2.03 49.87 16 26 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 27 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 28 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 29 C 0.20 10.03 4.33 86.73 0.38 10.41 16 30 H 0.10 1.37 7.57 -2.39 -0.02 1.35 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.41 11.22 5.82 -92.71 -0.54 10.68 16 34 H 0.13 2.60 6.41 -2.91 -0.02 2.58 16 35 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 36 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 37 H 0.16 1.57 8.06 -2.91 -0.02 1.54 16 38 H 0.13 2.96 7.65 -2.91 -0.02 2.94 16 39 H 0.41 9.21 7.91 -92.71 -0.73 8.48 16 40 H 0.06 1.89 8.06 -2.39 -0.02 1.87 16 41 H 0.05 2.04 5.97 -2.38 -0.01 2.03 16 42 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.12 2.24 8.07 -2.39 -0.02 2.22 16 44 H 0.09 2.46 8.05 -2.39 -0.02 2.44 16 45 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.24 15.28 8.31 -92.71 -0.77 14.51 16 48 H 0.00 0.10 7.17 -2.39 -0.02 0.08 16 49 H 0.01 0.41 6.13 -2.38 -0.01 0.39 16 Total: -1.00 -83.62 395.07 1.36 -82.25 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: -0.29 Total: 30.07 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: 6.16 Total: 21.84 kcal Atomic # 7 Polarization: -133.91 SS G_CDS: -6.43 Total: -140.34 kcal Atomic # 8 Polarization: -43.59 SS G_CDS: -0.10 Total: -43.69 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 2.03 Total: 49.87 kcal Total: -83.62 1.36 -82.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724185384.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.592 kcal (2) G-P(sol) polarization free energy of solvation -83.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds