Wall clock time and date at job start Wed Apr 1 2020 02:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46975 * 2 1 4 4 N 1.46503 * 109.47248 * 240.00320 * 2 1 3 5 5 C 1.36936 * 119.99771 * 84.99645 * 4 2 1 6 6 H 1.07992 * 120.00415 * 0.02562 * 5 4 2 7 7 C 1.38812 * 119.99463 * 180.02562 * 5 4 2 8 8 N 1.31618 * 120.00234 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00057 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46531 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47376 * 119.99693 * 9 7 5 12 12 H 1.48501 * 109.47123 * 240.00366 * 9 7 5 13 13 C 1.53004 * 109.47200 * 120.00021 * 2 1 3 14 14 H 1.09000 * 109.54989 * 299.87326 * 13 2 1 15 15 C 1.53292 * 109.51089 * 179.74858 * 13 2 1 16 16 N 1.47153 * 108.38412 * 187.77517 * 15 13 2 17 17 C 1.34774 * 120.98152 * 230.56040 * 16 15 13 18 18 O 1.21511 * 120.00236 * 1.47284 * 17 16 15 19 19 C 1.48172 * 119.99943 * 181.48040 * 17 16 15 20 20 C 1.39303 * 119.72549 * 191.71485 * 19 17 16 21 21 C 1.38593 * 119.06421 * 179.70987 * 20 19 17 22 22 C 1.38630 * 118.48067 * 0.55333 * 21 20 19 23 23 C 1.50701 * 120.32235 * 179.75544 * 22 21 20 24 24 C 1.52999 * 117.49983 * 188.59558 * 23 22 21 25 25 C 1.52999 * 117.50206 * 119.97196 * 23 22 21 26 26 C 1.38557 * 119.35373 * 359.72870 * 22 21 20 27 27 N 1.31520 * 120.90723 * 359.97438 * 26 22 21 28 28 C 1.47158 * 118.03381 * 50.53119 * 16 15 13 29 29 C 1.53293 * 108.38658 * 309.46679 * 28 16 15 30 30 O 1.42954 * 109.50897 * 60.00266 * 13 2 1 31 31 H 1.09002 * 109.46762 * 59.99881 * 1 2 3 32 32 H 1.08994 * 109.47055 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46761 * 299.99620 * 1 2 3 34 34 H 0.96993 * 119.99447 * 265.00004 * 4 2 1 35 35 H 0.97003 * 120.00035 * 179.97438 * 8 7 5 36 36 H 1.09005 * 109.68255 * 307.49499 * 15 13 2 37 37 H 1.09002 * 109.68621 * 68.04904 * 15 13 2 38 38 H 1.08005 * 120.46577 * 359.97438 * 20 19 17 39 39 H 1.07990 * 120.76272 * 180.28307 * 21 20 19 40 40 H 1.09000 * 115.54943 * 334.30492 * 23 22 21 41 41 H 1.08995 * 117.49663 * 0.02562 * 24 23 22 42 42 H 1.08999 * 117.49598 * 145.01916 * 24 23 22 43 43 H 1.08993 * 117.50178 * 214.98288 * 25 23 22 44 44 H 1.08998 * 117.49569 * 359.97438 * 25 23 22 45 45 H 1.08004 * 119.54433 * 180.02562 * 26 22 21 46 46 H 1.08994 * 109.67586 * 189.74105 * 28 16 15 47 47 H 1.08997 * 109.67710 * 69.19362 * 28 16 15 48 48 H 1.08997 * 109.51560 * 292.38132 * 29 28 16 49 49 H 1.08994 * 109.55486 * 172.25111 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1491 -0.0073 -2.3757 6 1 1.8926 1.0406 -2.4241 7 6 2.6114 -0.6618 -3.5093 8 7 2.9245 -1.9389 -3.4502 9 14 2.7904 0.2702 -5.1183 10 1 2.3776 1.6829 -4.9204 11 1 4.2073 0.2265 -5.5607 12 1 1.9292 -0.3575 -6.1524 13 6 2.0401 -0.7213 1.2493 14 1 1.6793 -0.2071 2.1401 15 6 3.5730 -0.7273 1.2470 16 7 4.0354 -1.5829 2.3513 17 6 4.9538 -1.1413 3.2333 18 8 5.3929 -0.0123 3.1393 19 6 5.4281 -2.0328 4.3177 20 6 6.1827 -1.5068 5.3639 21 6 6.6142 -2.3518 6.3741 22 6 6.2856 -3.6964 6.2966 23 6 6.7379 -4.6532 7.3694 24 6 6.5165 -6.1469 7.1230 25 6 5.6561 -5.4048 8.1477 26 6 5.5367 -4.1518 5.2235 27 7 5.1350 -3.3267 4.2813 28 6 3.4648 -2.9346 2.4645 29 6 1.9372 -2.8210 2.4075 30 8 1.5641 -2.0692 1.2500 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.2491 -1.6316 -1.1526 35 1 3.2471 -2.3963 -4.2424 36 1 3.9372 -1.1230 0.2988 37 1 3.9444 0.2877 1.3887 38 1 6.4244 -0.4544 5.3896 39 1 7.1968 -1.9724 7.2004 40 1 7.6365 -4.3601 7.9123 41 1 6.0440 -6.4375 6.1847 42 1 7.2696 -6.8368 7.5036 43 1 5.8432 -5.6065 9.2023 44 1 4.6172 -5.2069 7.8840 45 1 5.2786 -5.1987 5.1602 46 1 3.7646 -3.3813 3.4124 47 1 3.8182 -3.5524 1.6390 48 1 1.5760 -2.3146 3.3025 49 1 1.4991 -3.8175 2.3512 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725334217.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:00 Heat of formation + Delta-G solvation = 1.683223 kcal Electronic energy + Delta-G solvation = -30501.149843 eV Core-core repulsion = 26429.687532 eV Total energy + Delta-G solvation = -4071.462311 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.14929 -40.88745 -39.56107 -37.99212 -37.10900 -35.87696 -34.19382 -33.65014 -32.30219 -31.50139 -30.12748 -29.02261 -26.43476 -25.69713 -25.16991 -24.79366 -23.57397 -23.11154 -21.80756 -21.32386 -20.95548 -19.38280 -18.68279 -18.33090 -17.54799 -17.00995 -16.91816 -16.81768 -16.32984 -16.09272 -15.96100 -15.83826 -15.67806 -15.18912 -15.10036 -14.89837 -14.69601 -14.50801 -14.20277 -13.98492 -13.80987 -13.46860 -13.08295 -12.84803 -12.79618 -12.72942 -12.52518 -12.50080 -12.30665 -12.13245 -11.98692 -11.80630 -11.69534 -11.59966 -11.45470 -11.24261 -11.11514 -10.96116 -10.85989 -10.02536 -9.92253 -9.57314 -8.95595 -7.89808 -5.17474 -0.51439 0.13093 1.46964 1.47810 1.51658 1.57594 1.72137 2.57310 2.57448 2.77503 2.92445 3.09742 3.43796 3.47500 3.53531 3.70820 3.82258 3.85402 3.93052 3.97720 3.99402 4.06185 4.12775 4.18892 4.22962 4.30578 4.32304 4.46386 4.56087 4.63183 4.68966 4.77657 4.85394 4.87483 4.90388 4.97794 5.03912 5.07576 5.08327 5.11661 5.21006 5.28849 5.30061 5.32945 5.53781 5.59626 5.66294 6.19804 6.26407 6.32887 6.55000 6.91834 7.38303 8.14200 8.39809 9.33763 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018187 B = 0.002361 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.181186 B =11855.745298 C =11971.441026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.173 3.827 3 H 0.061 0.939 4 N -0.726 5.726 5 C -0.233 4.233 6 H 0.077 0.923 7 C -0.078 4.078 8 N -0.968 5.968 9 Si 0.969 3.031 10 H -0.266 1.266 11 H -0.297 1.297 12 H -0.295 1.295 13 C 0.094 3.906 14 H 0.076 0.924 15 C 0.091 3.909 16 N -0.591 5.591 17 C 0.560 3.440 18 O -0.574 6.574 19 C 0.052 3.948 20 C -0.108 4.108 21 C -0.068 4.068 22 C -0.069 4.069 23 C -0.130 4.130 24 C -0.173 4.173 25 C -0.160 4.160 26 C 0.088 3.912 27 N -0.458 5.458 28 C 0.035 3.965 29 C 0.044 3.956 30 O -0.385 6.385 31 H 0.040 0.960 32 H 0.044 0.956 33 H 0.067 0.933 34 H 0.376 0.624 35 H 0.248 0.752 36 H 0.059 0.941 37 H 0.084 0.916 38 H 0.147 0.853 39 H 0.176 0.824 40 H 0.133 0.867 41 H 0.103 0.897 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.095 0.905 45 H 0.188 0.812 46 H 0.178 0.822 47 H 0.056 0.944 48 H 0.060 0.940 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.889 -8.464 30.308 32.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.064 3.936 3 H 0.079 0.921 4 N -0.367 5.367 5 C -0.365 4.365 6 H 0.095 0.905 7 C -0.270 4.270 8 N -0.620 5.620 9 Si 0.799 3.201 10 H -0.190 1.190 11 H -0.225 1.225 12 H -0.222 1.222 13 C 0.035 3.965 14 H 0.093 0.907 15 C -0.032 4.032 16 N -0.321 5.321 17 C 0.348 3.652 18 O -0.454 6.454 19 C -0.084 4.084 20 C -0.129 4.129 21 C -0.093 4.093 22 C -0.071 4.071 23 C -0.148 4.148 24 C -0.209 4.209 25 C -0.197 4.197 26 C -0.072 4.072 27 N -0.170 5.170 28 C -0.086 4.086 29 C -0.033 4.033 30 O -0.304 6.304 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.209 0.791 35 H 0.057 0.943 36 H 0.077 0.923 37 H 0.103 0.897 38 H 0.165 0.835 39 H 0.193 0.807 40 H 0.151 0.849 41 H 0.121 0.879 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.113 0.887 45 H 0.204 0.796 46 H 0.193 0.807 47 H 0.075 0.925 48 H 0.079 0.921 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.502 -8.060 29.262 30.847 hybrid contribution 0.840 0.582 -0.882 1.350 sum 6.342 -7.478 28.380 30.027 Atomic orbital electron populations 1.22160 0.96816 1.01116 1.00626 1.20515 0.93814 0.94592 0.84680 0.92140 1.42510 1.77970 1.10473 1.05769 1.19677 1.34403 0.94133 0.88283 0.90525 1.25518 1.03326 0.96865 1.01317 1.69853 1.52853 1.10201 1.29053 0.85120 0.76559 0.78268 0.80126 1.18984 1.22473 1.22206 1.22608 0.91077 0.84112 0.98719 0.90673 1.22169 0.95954 0.96042 0.89058 1.48143 1.40188 1.16741 1.27044 1.18481 0.78993 0.86113 0.81567 1.90734 1.58983 1.20770 1.74947 1.20799 1.00637 0.91038 0.95891 1.22178 0.95210 1.02626 0.92870 1.21785 0.97374 0.92051 0.98080 1.20635 0.95932 0.94717 0.95778 1.21076 1.02261 0.92252 0.99259 1.23221 1.03593 0.92620 1.01485 1.23137 0.96057 1.02009 0.98520 1.23336 0.94281 1.00455 0.89088 1.67227 1.19631 1.03032 1.27067 1.23989 0.93966 0.81989 1.08689 1.23245 0.93931 0.97972 0.88168 1.88040 1.75448 1.23587 1.43314 0.94072 0.93669 0.91380 0.79095 0.94310 0.92269 0.89720 0.83482 0.80657 0.84868 0.87883 0.86896 0.86811 0.88653 0.79552 0.80660 0.92513 0.92148 0.85776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.55 9.35 71.98 0.67 -4.88 16 2 C 0.17 7.24 2.74 44.99 0.12 7.36 16 3 H 0.06 2.50 8.08 -2.38 -0.02 2.48 16 4 N -0.73 -38.16 4.29 -322.92 -1.38 -39.55 16 5 C -0.23 -13.32 9.93 84.03 0.83 -12.48 16 6 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 7 C -0.08 -4.65 5.50 84.86 0.47 -4.19 16 8 N -0.97 -61.56 13.06 21.65 0.28 -61.28 16 9 Si 0.97 47.99 29.55 68.60 2.03 50.02 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 12 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 13 C 0.09 3.46 2.53 30.69 0.08 3.54 16 14 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 15 C 0.09 3.61 5.87 86.35 0.51 4.11 16 16 N -0.59 -20.43 3.02 -820.39 -2.48 -22.91 16 17 C 0.56 19.16 7.68 86.88 0.67 19.82 16 18 O -0.57 -22.91 15.85 -3.75 -0.06 -22.96 16 19 C 0.05 1.34 6.60 41.91 0.28 1.62 16 20 C -0.11 -2.18 9.63 22.61 0.22 -1.96 16 21 C -0.07 -0.86 9.88 22.45 0.22 -0.64 16 22 C -0.07 -0.80 5.63 -19.69 -0.11 -0.91 16 23 C -0.13 -0.83 6.06 -11.54 -0.07 -0.90 16 24 C -0.17 -0.84 9.87 30.59 0.30 -0.54 16 25 C -0.16 -0.78 10.17 30.59 0.31 -0.47 16 26 C 0.09 1.29 10.47 84.82 0.89 2.18 16 27 N -0.46 -10.07 6.09 -184.91 -1.13 -11.20 16 28 C 0.04 1.02 6.17 86.35 0.53 1.56 16 29 C 0.04 1.20 6.99 72.08 0.50 1.70 16 30 O -0.39 -14.15 9.22 -148.98 -1.37 -15.52 16 31 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.04 1.79 7.68 -2.39 -0.02 1.77 16 33 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.38 21.73 7.20 -92.71 -0.67 21.06 16 35 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 36 H 0.06 2.81 7.26 -2.38 -0.02 2.80 16 37 H 0.08 3.47 7.07 -2.39 -0.02 3.46 16 38 H 0.15 2.98 7.69 -2.91 -0.02 2.95 16 39 H 0.18 1.03 8.06 -2.92 -0.02 1.01 16 40 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.10 0.48 6.19 -2.39 -0.01 0.46 16 42 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 44 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.19 1.71 6.03 -2.91 -0.02 1.69 16 46 H 0.18 4.29 3.92 -74.23 -0.29 4.00 16 47 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 49 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -76.27 394.19 2.34 -73.93 By element: Atomic # 1 Polarization: 34.52 SS G_CDS: 0.02 Total: 34.54 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: 6.42 Total: 14.93 kcal Atomic # 7 Polarization: -130.22 SS G_CDS: -4.70 Total: -134.93 kcal Atomic # 8 Polarization: -37.06 SS G_CDS: -1.43 Total: -38.49 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.03 Total: 50.02 kcal Total: -76.27 2.34 -73.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725334217.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.615 kcal (2) G-P(sol) polarization free energy of solvation -76.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds